Cmc06g0164801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0164801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DEAD-box ATP-dependent RNA helicase 32
Location	CMiso1.1chr06: 15750432 .. 15751313 (+)
RNA-Seq Expression	Cmc06g0164801
Synteny	Cmc06g0164801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTCAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAACTTGATGCTACTGATAATGACTGTCATTGTATTGATGTTGATGATGATGACTGAGATTATTATGTTGATGATTGATGATGATGACTGATGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATATTCATGCCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGAGTGGTCCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCGGGTTCACTACAGACCAGCATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTTTCATTCCTATGGGAGCGCATGTTGCACGTGTTCAGGAACGTGTCAGAGATTGGGTACCATTTACAGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATGCTCACTCTTTTTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGCGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAAATTTATTCT

mRNA sequence

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGCGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAAATTTATTCT

Coding sequence (CDS)

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGCGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MIRIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF

Homology

[Close]

BLAST of Cmc06g0164801 vs. NCBI nr
Match: KAA0033961.1 (DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 54/100 (54.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]

BLAST of Cmc06g0164801 vs. NCBI nr
Match: KAA0051087.1 (transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 49/109 (44.95%), Postives = 51/109 (46.79%), Query Frame = 0


Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]

BLAST of Cmc06g0164801 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGKGRGKLASD+EGSVTCHM TQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]

BLAST of Cmc06g0164801 vs. NCBI nr
Match: TYK19769.1 (hypothetical protein E5676_scaffold1676G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 59
          GEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF
Sbjct: 51 GEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 84

[Close]

BLAST of Cmc06g0164801 vs. NCBI nr
Match: KAA0063966.1 (hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 6.5e-10
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 18 LVWLKSPGEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 59
          +V +   GEGKGRGKLASDREGSVTCHM TQFCFRVYVSVF
Sbjct: 17 IVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]

BLAST of Cmc06g0164801 vs. ExPASy TrEMBL
Match: A0A5A7SWX3 (DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00360 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-15
Identity = 54/100 (54.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]

BLAST of Cmc06g0164801 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 49/109 (44.95%), Postives = 51/109 (46.79%), Query Frame = 0


Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]

BLAST of Cmc06g0164801 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGKGRGKLASD+EGSVTCHM TQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]

BLAST of Cmc06g0164801 vs. ExPASy TrEMBL
Match: A0A5D3D8J0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1676G00040 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 59
          GEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF
Sbjct: 51 GEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 84

[Close]

BLAST of Cmc06g0164801 vs. ExPASy TrEMBL
Match: A0A5A7UUC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00060 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMRTQFCFRVYVSVF 59
          GEGKGRGKLASDREGSVTCHM TQFCFRVYVSVF
Sbjct: 60 GEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 93

The following BLAST results are available for this feature:

BLAST of Cmc06g0164801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033961.1	1.1e-14	54.00	DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DE...	[more]
KAA0051087.1	3.4e-11	44.95	transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var...	[more]
KAA0045385.1	1.0e-10	65.45	hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa]	[more]
TYK19769.1	1.7e-10	100.00	hypothetical protein E5676_scaffold1676G00040 [Cucumis melo var. makuwa]	[more]
KAA0063966.1	6.5e-10	82.93	hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0164801 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0164801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWX3	5.5e-15	54.00	DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3CKP0	1.7e-11	44.95	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE...	[more]
A0A5A7TVG7	4.8e-11	65.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J0	8.3e-11	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UUC1	3.1e-10	97.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc06g0164801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0164801.1	Cmc06g0164801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0008270	zinc ion binding