Cmc06g0160231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0160231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Cytochrome c biogenesis B
Location	CMiso1.1chr06: 8527377 .. 8527622 (+)
RNA-Seq Expression	Cmc06g0160231
Synteny	Cmc06g0160231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAACTCTTTCTTTCACTATATCATAAACGGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCGTCGTCACACCCTTAATGCTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTTCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGTGCTTAA

mRNA sequence

ATGAGACAACTCTTTCTTTCACTATATCATAAACGGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCGTCGTCACACCCTTAATGCTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTTCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGTGCTTAA

Coding sequence (CDS)

ATGAGACAACTCTTTCTTTCACTATATCATAAACGGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCGTCGTCACACCCTTAATGCTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTTCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGTGCTTAA

Protein sequence

MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFPPAPFPRNEKEDGTLELYYLSA

Homology

[Close]

BLAST of Cmc06g0160231 vs. NCBI nr
Match: AEN56106.1 (cytochrome c biogenesis B [Cucumis melo subsp. melo] >AZP40281.1 cytochrome c biogenesis B [Cucumis melo var. momordica])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. NCBI nr
Match: YP_009913630.1 (cytochrome c biogenesis B [Luffa acutangula] >QLJ93004.1 cytochrome c biogenesis B [Luffa acutangula])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. NCBI nr
Match: YP_004849329.1 (cytochrome c biogenesis B [Cucumis sativus] >ADZ10756.1 cytochrome c biogenesis B [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 4.6e-38
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFL LYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLELYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. NCBI nr
Match: YP_009522824.1 (cytochrome c biogenesis B [Styphnolobium japonicum] >AXQ37254.1 cytochrome c biogenesis B [Styphnolobium japonicum])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFL LYHKRIFPSTPITSFSPFLSYIVVTPL+LGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLELYHKRIFPSTPITSFSPFLSYIVVTPLILGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. NCBI nr
Match: QDH82080.1 (cytochrome c biogenesis B [Broussonetia luzonica] >QDH82105.1 cytochrome c biogenesis B [Broussonetia monoica] >QDH82130.1 cytochrome c biogenesis B [Trophis scandens] >QDH82154.1 cytochrome c biogenesis B [Broussonetia kurzii] >QDH82178.1 cytochrome c biogenesis B [Broussonetia kaempferi] >QDH82203.1 cytochrome c biogenesis B [Broussonetia papyrifera])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFL LYHK+IFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLELYHKQIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. ExPASy Swiss-Prot
Match: P93280 (Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMB PE=2 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 9.4e-26
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LF  LY+K IF STPITSFS FL YIVVTPLMLGFEKDF CH HLG I I  LF F 
Sbjct: 1  MRRLFFELYYKLIFSSTPITSFSLFLLYIVVTPLMLGFEKDFLCHFHLGLIWISLLFSFL 60

Query: 61 PAPFPRNEKEDGTLELYYLS 81
           A F RNEKEDGTLELYYLS
Sbjct: 61 SALFFRNEKEDGTLELYYLS 80

[Close]

BLAST of Cmc06g0160231 vs. ExPASy Swiss-Prot
Match: P38454 (Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMB PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-18
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 3   QLFLSLYHKRIF--PSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 62
           ++FL L+++ I    ST IT+FS FL YIVVTPLM+GF KDF CH HLG I I  LF F 
Sbjct: 69  KIFLKLFYQHILLNLSTLITTFSLFLLYIVVTPLMIGFSKDFLCHFHLGLIWICLLFSFL 128

Query: 63  PAPFPRNEKEDGTLELYYLS 81
           P  F +N+ EDGTLELYYLS
Sbjct: 129 PERFFQNDFEDGTLELYYLS 148

[Close]

BLAST of Cmc06g0160231 vs. ExPASy TrEMBL
Match: A0A7D6C7C3 (Cytochrome c biogenesis B OS=Luffa acutangula OX=56866 GN=ccmB PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.7e-39
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. ExPASy TrEMBL
Match: G3EU22 (Cytochrome c biogenesis B OS=Cucumis melo subsp. melo OX=412675 GN=ccmB PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.7e-39
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. ExPASy TrEMBL
Match: A0A3Q9CS08 (Cytochrome c biogenesis B OS=Cucumis melo var. momordica OX=2034244 GN=ccmB PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.7e-39
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. ExPASy TrEMBL
Match: G3EIY1 (Cytochrome c biogenesis B OS=Cucumis sativus OX=3659 GN=ccmB PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.2e-38
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFL LYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLELYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. ExPASy TrEMBL
Match: A0A142BZ22 (Cytochrome c biogenesis B OS=Ziziphus jujuba OX=326968 GN=ccmB PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.5e-38
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFL LYHK+IFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLELYHKQIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLSA 82
          PAPFPRNEKEDGTLELYYLSA
Sbjct: 61 PAPFPRNEKEDGTLELYYLSA 81

[Close]

BLAST of Cmc06g0160231 vs. TAIR 10
Match: ATMG00110.1 (cytochrome C biogenesis 206 )

HSP 1 Score: 157.1 bits (396), Expect = 5.8e-39
Identity = 74/80 (92.50%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MRQLFLSLYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGSIRIPPLFPFP 60
          MR+LFL LYHK IF STPITSFS FLSYIVVTPLMLGFEKDFSCHSHLG IRIPPLFPFP
Sbjct: 1  MRRLFLELYHKLIFSSTPITSFSSFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFP 60

Query: 61 PAPFPRNEKEDGTLELYYLS 81
          PAPFPRNEKEDGTLELYYLS
Sbjct: 61 PAPFPRNEKEDGTLELYYLS 80

The following BLAST results are available for this feature:

BLAST of Cmc06g0160231 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56106.1	1.6e-38	97.53	cytochrome c biogenesis B [Cucumis melo subsp. melo] >AZP40281.1 cytochrome c bi...	[more]
YP_009913630.1	1.6e-38	97.53	cytochrome c biogenesis B [Luffa acutangula] >QLJ93004.1 cytochrome c biogenesis...	[more]
YP_004849329.1	4.6e-38	96.30	cytochrome c biogenesis B [Cucumis sativus] >ADZ10756.1 cytochrome c biogenesis ...	[more]
YP_009522824.1	1.3e-37	95.06	cytochrome c biogenesis B [Styphnolobium japonicum] >AXQ37254.1 cytochrome c bio...	[more]
QDH82080.1	1.3e-37	95.06	cytochrome c biogenesis B [Broussonetia luzonica] >QDH82105.1 cytochrome c bioge...	[more]

BLAST of Cmc06g0160231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93280	9.4e-26	76.25	Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis ...	[more]
P38454	7.2e-18	61.25	Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Marchantia p...	[more]

BLAST of Cmc06g0160231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D6C7C3	7.7e-39	97.53	Cytochrome c biogenesis B OS=Luffa acutangula OX=56866 GN=ccmB PE=3 SV=1	[more]
G3EU22	7.7e-39	97.53	Cytochrome c biogenesis B OS=Cucumis melo subsp. melo OX=412675 GN=ccmB PE=3 SV=...	[more]
A0A3Q9CS08	7.7e-39	97.53	Cytochrome c biogenesis B OS=Cucumis melo var. momordica OX=2034244 GN=ccmB PE=3...	[more]
G3EIY1	2.2e-38	96.30	Cytochrome c biogenesis B OS=Cucumis sativus OX=3659 GN=ccmB PE=3 SV=1	[more]
A0A142BZ22	6.5e-38	95.06	Cytochrome c biogenesis B OS=Ziziphus jujuba OX=326968 GN=ccmB PE=3 SV=1	[more]

BLAST of Cmc06g0160231 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00110.1	5.8e-39	92.50	cytochrome C biogenesis 206	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR30070:SF2	CYTOCHROME C BIOGENESIS B	coord: 1..81
IPR003544	Cytochrome c-type biogenesis protein CcmB	PANTHER	PTHR30070	HEME EXPORTER PROTEIN B	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0160231.1	Cmc06g0160231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0015232	heme transmembrane transporter activity