Cmc06g0160091 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0160091
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 8362758 .. 8363396 (-)
RNA-Seq Expression	Cmc06g0160091
Synteny	Cmc06g0160091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGACTTTGCTGTAATCTTAGGTATGGATTGGCTAACCGTTAATCATGCTAGTATAGATTGTTTCCGTATGGAGGTGGTGTTTAATCCTCCTACAGGGACTAGTTTTAAGTTTAAGGGAGTAGGAACCGTGGTCCTGCCCAAGGTGATCTCAGCTATGAAAGCCAACAAGCTACTTAACCAGGGTACTTGGAGTATCTTGGCCAGTGTAGTGGATACTAAAGAGGCTGATGTTTCTTTGTCATCGGAGCCTATGGTGAGGGATTATCCAAATGTTTTTCCTGAAGAACTTCCAAGATTACCCCTTCACAGGGAGATTGATTTAGCTATCGAGTTGGAACCTGGTACTGTTCCCATATCTAAAGCTCCTTACAAAATGGCCCCAGCAGAGTTGAAAGAGCTGAAAGTGCAGTTGCAAGAGTTACTTGACAAAGGTTTCATTCAACCGAGTGTGTCACCTTGGGGTGCACCAGTTTTGTTCGTTAAAAAGAAAGATGGGCTGATGCGCCTGTGTATTGACTGCAAGGAGTTGAATAAGGTAACTGTTAAGAACAAGTATCCTTTGTCCAGGATTAATGATCTATTTGACCAGTTGCAGGGAGCTACAGTGTTCTCTAAGATTGACCTTCGATCATGA

mRNA sequence

ATGCACGACTTTGCTGTAATCTTAGGTATGGATTGGCTAACCGTTAATCATGCTAGTATAGATTGTTTCCGTATGGAGGTGGTGTTTAATCCTCCTACAGGGACTAGTTTTAAGTTTAAGGGAGTAGGAACCGTGGTCCTGCCCAAGGTGATCTCAGCTATGAAAGCCAACAAGCTACTTAACCAGGGTACTTGGAGTATCTTGGCCAGTGTAGTGGATACTAAAGAGGCTGATGTTTCTTTGTCATCGGAGCCTATGGTGAGGGATTATCCAAATGTTTTTCCTGAAGAACTTCCAAGATTACCCCTTCACAGGGAGATTGATTTAGCTATCGAGTTGGAACCTGGTACTGTTCCCATATCTAAAGCTCCTTACAAAATGGCCCCAGCAGAGTTGAAAGAGCTGAAAGTGCAGTTGCAAGAGTTACTTGACAAAGGTTTCATTCAACCGAGTGTGTCACCTTGGGGTGCACCAGTTTTGTTCGTTAAAAAGAAAGATGGGCTGATGCGCCTGTGTATTGACTGCAAGGAGTTGAATAAGGTAACTGTTAAGAACAAGTATCCTTTGTCCAGGATTAATGATCTATTTGACCAGTTGCAGGGAGCTACAGTGTTCTCTAAGATTGACCTTCGATCATGA

Coding sequence (CDS)

ATGCACGACTTTGCTGTAATCTTAGGTATGGATTGGCTAACCGTTAATCATGCTAGTATAGATTGTTTCCGTATGGAGGTGGTGTTTAATCCTCCTACAGGGACTAGTTTTAAGTTTAAGGGAGTAGGAACCGTGGTCCTGCCCAAGGTGATCTCAGCTATGAAAGCCAACAAGCTACTTAACCAGGGTACTTGGAGTATCTTGGCCAGTGTAGTGGATACTAAAGAGGCTGATGTTTCTTTGTCATCGGAGCCTATGGTGAGGGATTATCCAAATGTTTTTCCTGAAGAACTTCCAAGATTACCCCTTCACAGGGAGATTGATTTAGCTATCGAGTTGGAACCTGGTACTGTTCCCATATCTAAAGCTCCTTACAAAATGGCCCCAGCAGAGTTGAAAGAGCTGAAAGTGCAGTTGCAAGAGTTACTTGACAAAGGTTTCATTCAACCGAGTGTGTCACCTTGGGGTGCACCAGTTTTGTTCGTTAAAAAGAAAGATGGGCTGATGCGCCTGTGTATTGACTGCAAGGAGTTGAATAAGGTAACTGTTAAGAACAAGTATCCTTTGTCCAGGATTAATGATCTATTTGACCAGTTGCAGGGAGCTACAGTGTTCTCTAAGATTGACCTTCGATCATGA

Protein sequence

MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLLNQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPISKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNKVTVKNKYPLSRINDLFDQLQGATVFSKIDLRS

Homology

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BLAST of Cmc06g0160091 vs. NCBI nr
Match: KAA0046014.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 360.5 bits (924), Expect = 9.7e-96
Identity = 176/212 (83.02%), Postives = 194/212 (91.51%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 481 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSLASFKFKGGGSKSLPQVISAIRASKLL 540

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 541 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 600

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCIDC+ELNK
Sbjct: 601 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDCRELNK 660

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 661 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 692

[Close]

BLAST of Cmc06g0160091 vs. NCBI nr
Match: KAA0038231.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 175/212 (82.55%), Postives = 194/212 (91.51%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 428 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLL 487

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW+ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 488 SQGTWAILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 547

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 548 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 607

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 608 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 639

[Close]

BLAST of Cmc06g0160091 vs. NCBI nr
Match: KAA0037369.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 173/212 (81.60%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL+ NHA+IDCF  EVVFNPP+G SFKF+GVG V +PKVISAMKA+KLL
Sbjct: 340 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGVGIVCIPKVISAMKASKLL 399

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVD +E +VSLSSEP+VR+YP+VFP+ELP LP  RE+D AIELEPGT PI
Sbjct: 400 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 459

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 460 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 519

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 520 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 551

[Close]

BLAST of Cmc06g0160091 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94
Identity = 175/212 (82.55%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 708 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLL 767

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 768 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 827

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 828 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 887

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 888 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 919

[Close]

BLAST of Cmc06g0160091 vs. NCBI nr
Match: KAA0043391.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94
Identity = 175/212 (82.55%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 780 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLL 839

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 840 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 899

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 900 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 959

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 960 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 991

[Close]

BLAST of Cmc06g0160091 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-17
Identity = 53/170 (31.18%), Postives = 88/170 (51.76%), Query Frame = 0


Query: 55  KANKLLNQGTWSILASVVDTKEADVSLSSEP---------MVRDYPNVFPEELPRLPL-- 114
           +A+ L   G +S + S + + E + +  S           + + Y  +   +LP  P   
Sbjct: 520 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADI 579

Query: 115 -HREIDLAIELEPGTVPISKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFV 174
            +  +   IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+ V
Sbjct: 580 NNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLV 639

Query: 175 KKKDGLMRLCIDCKELNKVTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
            KKDG  RLC+D + LNK T+ + +PL RI++L  ++  A +F+ +DL S
Sbjct: 640 PKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHS 689

[Close]

BLAST of Cmc06g0160091 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-17
Identity = 53/170 (31.18%), Postives = 88/170 (51.76%), Query Frame = 0


Query: 55  KANKLLNQGTWSILASVVDTKEADVSLSSEP---------MVRDYPNVFPEELPRLPL-- 114
           +A+ L   G +S + S + + E + +  S           + + Y  +   +LP  P   
Sbjct: 546 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADI 605

Query: 115 -HREIDLAIELEPGTVPISKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFV 174
            +  +   IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+ V
Sbjct: 606 NNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLV 665

Query: 175 KKKDGLMRLCIDCKELNKVTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
            KKDG  RLC+D + LNK T+ + +PL RI++L  ++  A +F+ +DL S
Sbjct: 666 PKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHS 715

[Close]

BLAST of Cmc06g0160091 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 96  EELPRLPLHREIDLAIELEPGTVPISKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPW 155
           E+LP+     E ++ +  E   +PI    Y + P +++ +  ++ + L  G I+ S +  
Sbjct: 391 EKLPKPIKGLEFEVELTQENYRLPIRN--YPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 156 GAPVLFVKKKDGLMRLCIDCKELNKVTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
             PV+FV KK+G +R+ +D K LNK    N YPL  I  L  ++QG+T+F+K+DL+S
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505

[Close]

BLAST of Cmc06g0160091 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 96  EELPRLPLHREIDLAIELEPGTVPISKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPW 155
           E+LP+     E ++ +  E   +PI    Y + P +++ +  ++ + L  G I+ S +  
Sbjct: 391 EKLPKPIKGLEFEVELTQENYRLPIRN--YPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 156 GAPVLFVKKKDGLMRLCIDCKELNKVTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
             PV+FV KK+G +R+ +D K LNK    N YPL  I  L  ++QG+T+F+K+DL+S
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505

[Close]

BLAST of Cmc06g0160091 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-13
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 96  EELPRLPLHREIDLAIELEPGTVPISKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPW 155
           E+LP+     E ++ +  E   +PI    Y + P +++ +  ++ + L  G I+ S +  
Sbjct: 391 EKLPKPIKGLEFEVELTQENYRLPIRN--YPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 156 GAPVLFVKKKDGLMRLCIDCKELNKVTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
             PV+FV KK+G +R+ +D K LNK    N YPL  I  L  ++QG+T+F+K+DL+S
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKS 505

[Close]

BLAST of Cmc06g0160091 vs. ExPASy TrEMBL
Match: A0A5A7TSI1 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005780 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.7e-96
Identity = 176/212 (83.02%), Postives = 194/212 (91.51%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 481 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSLASFKFKGGGSKSLPQVISAIRASKLL 540

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 541 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 600

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCIDC+ELNK
Sbjct: 601 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDCRELNK 660

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 661 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 692

[Close]

BLAST of Cmc06g0160091 vs. ExPASy TrEMBL
Match: A0A5A7T7M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00720 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.2e-95
Identity = 173/212 (81.60%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL+ NHA+IDCF  EVVFNPP+G SFKF+GVG V +PKVISAMKA+KLL
Sbjct: 340 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGVGIVCIPKVISAMKASKLL 399

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVD +E +VSLSSEP+VR+YP+VFP+ELP LP  RE+D AIELEPGT PI
Sbjct: 400 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 459

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 460 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 519

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 520 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 551

[Close]

BLAST of Cmc06g0160091 vs. ExPASy TrEMBL
Match: A0A5A7T9B7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00730 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.2e-95
Identity = 175/212 (82.55%), Postives = 194/212 (91.51%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 428 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLL 487

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW+ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 488 SQGTWAILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 547

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 548 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 607

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 608 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 639

[Close]

BLAST of Cmc06g0160091 vs. ExPASy TrEMBL
Match: A0A5A7TP96 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00630 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.8e-95
Identity = 175/212 (82.55%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 780 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLL 839

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 840 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 899

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 900 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 959

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 960 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 991

[Close]

BLAST of Cmc06g0160091 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.8e-95
Identity = 175/212 (82.55%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MHDFAVILGMDWLTVNHASIDCFRMEVVFNPPTGTSFKFKGVGTVVLPKVISAMKANKLL 60
           M DF VILGMDWL  NHASIDC R EV FNPP+  SFKFKG G+  LP+VISA++A+KLL
Sbjct: 708 MLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLL 767

Query: 61  NQGTWSILASVVDTKEADVSLSSEPMVRDYPNVFPEELPRLPLHREIDLAIELEPGTVPI 120
           +QGTW ILASVVDT+EADVSLSSEP+VRDYP+VFPEELP LP HRE++ AIELEPGTVPI
Sbjct: 768 SQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPI 827

Query: 121 SKAPYKMAPAELKELKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDGLMRLCIDCKELNK 180
           S+APY+MAPAELKELKVQLQELLDKGFI+PSVSPWGAPVLFVKKKDG MRLCID +ELNK
Sbjct: 828 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 887

Query: 181 VTVKNKYPLSRINDLFDQLQGATVFSKIDLRS 213
           VTVKN+YPL RI+DLFDQLQGATVFSKIDLRS
Sbjct: 888 VTVKNRYPLPRIDDLFDQLQGATVFSKIDLRS 919

[Close]

BLAST of Cmc06g0160091 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.4e-04
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 135 LKVQLQELLDKGFIQPSVSPWGAPVLFVKKKDG 168
           LK  L E+L+   IQPS+SP+ +PVL V+KKDG
Sbjct: 45  LKNWLGEMLEARIIQPSISPYSSPVLLVQKKDG 77

The following BLAST results are available for this feature:

BLAST of Cmc06g0160091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046014.1	9.7e-96	83.02	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038231.1	1.1e-94	82.55	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0037369.1	1.1e-94	81.60	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	1.4e-94	82.55	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043391.1	1.4e-94	82.55	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0160091 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	5.5e-17	31.18	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.5e-17	31.18	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.8e-13	34.19	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.8e-13	34.19	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.8e-13	34.19	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0160091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSI1	4.7e-96	83.02	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7T7M0	5.2e-95	81.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7T9B7	5.2e-95	82.55	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TP96	6.8e-95	82.55	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold58...	[more]
A0A5D3BPI1	6.8e-95	82.55	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc06g0160091 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	5.4e-04	57.58	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 108..186 e-value: 3.2E-39 score: 136.4
None	No IPR available	PFAM	PF08284	RVP_2	coord: 1..32 e-value: 9.9E-8 score: 31.9
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 3..185
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..185
None	No IPR available	CDD	cd01647	RT_LTR	coord: 146..212 e-value: 9.81385E-28 score: 101.518
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 187..212 e-value: 3.2E-39 score: 136.4
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 86..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0160091.1	Cmc06g0160091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding