Cmc06g0159571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0159571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 7763459 .. 7763929 (+)
RNA-Seq Expression	Cmc06g0159571
Synteny	Cmc06g0159571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCTCTTGAGTCCAATAGAACTTGGCATCTAGTTGACTTACCCCCTGGATGTAAAGCTATAGGTTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTGATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAAGGAAAATATAGACTTCTTTGATACTTTTTCTCCGGTCACTAGAATCACCTCTATTAGAGTGTTGATATCTATAGCTGCCCTAAACAATCTATTAATCCATCAGATGAATGTTAAAACAACTTACCTAAATGGTGATTTAGAAGAAGAGATTTACATAGAACAACCTGAAGGTTTCATAGTTCACGGTCAAGAATCCAAAGTTTGCAAACTAGATAAATCCCTCTATGGCCTAAAACAAGCTCCCAAGCAATGGCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACTAA

mRNA sequence

ATGGACTCTCTTGAGTCCAATAGAACTTGGCATCTAGTTGACTTACCCCCTGGATGTAAAGCTATAGGTTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTGATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAAGGAAAATATAGACTTCTTTGATACTTTTTCTCCGGTCACTAGAATCACCTCTATTAGAGTGTTGATATCTATAGCTGCCCTAAACAATCTATTAATCCATCAGATGAATGTTAAAACAACTTACCTAAATGGTGATTTAGAAGAAGAGATTTACATAGAACAACCTGAAGGTTTCATAGTTCACGGTCAAGAATCCAAAGTTTGCAAACTAGATAAATCCCTCTATGGCCTAAAACAAGCTCCCAAGCAATGGCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACTAA

Coding sequence (CDS)

ATGGACTCTCTTGAGTCCAATAGAACTTGGCATCTAGTTGACTTACCCCCTGGATGTAAAGCTATAGGTTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTGATGGATCAGTAGATAAGTATAAGGCTAGATTAGTAGCAAAAGGATTTAGGCAGAAGGAAAATATAGACTTCTTTGATACTTTTTCTCCGGTCACTAGAATCACCTCTATTAGAGTGTTGATATCTATAGCTGCCCTAAACAATCTATTAATCCATCAGATGAATGTTAAAACAACTTACCTAAATGGTGATTTAGAAGAAGAGATTTACATAGAACAACCTGAAGGTTTCATAGTTCACGGTCAAGAATCCAAAGTTTGCAAACTAGATAAATCCCTCTATGGCCTAAAACAAGCTCCCAAGCAATGGCACGAAAAGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACTAA

Protein sequence

MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD

Homology

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BLAST of Cmc06g0159571 vs. NCBI nr
Match: TYK11906.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 146/156 (93.59%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQ+ENIDFFD
Sbjct: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQRENIDFFD 60

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISIAALNNLLIHQM+VKT +LN DLEEEIY++Q EGFIVHGQESKV
Sbjct: 61  TFSPVTRITSIRVLISIAALNNLLIHQMDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKV 120

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQA KQWHEKFDNL MSKGFKVNESD
Sbjct: 121 CKLDKSLYGLKQASKQWHEKFDNLFMSKGFKVNESD 156

[Close]

BLAST of Cmc06g0159571 vs. NCBI nr
Match: TYK22685.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 141/156 (90.38%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESNRTWHLVDLPP CKAIGCKWVLRKK KPDGS+DKYKARLVAKGFRQ+EN+DFFD
Sbjct: 30  MDSLESNRTWHLVDLPPPCKAIGCKWVLRKKFKPDGSIDKYKARLVAKGFRQRENMDFFD 89

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFS VTRITSIRVLISIA LNNLLIHQM+VKTT+LNGDLEEEIY+EQPEGFIV  QESKV
Sbjct: 90  TFSSVTRITSIRVLISIAVLNNLLIHQMDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKV 149

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQAPK+WH+KFDNLLMSKGFKVNES+
Sbjct: 150 CKLDKSLYGLKQAPKEWHKKFDNLLMSKGFKVNESN 185

[Close]

BLAST of Cmc06g0159571 vs. NCBI nr
Match: GAU21337.1 (hypothetical protein TSUD_189240 [Trifolium subterraneum])

HSP 1 Score: 295.0 bits (754), Expect = 3.7e-76
Identity = 134/156 (85.90%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFD
Sbjct: 562 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 621

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISIAAL NL++HQM+VKT +LNGDLEEEIY+EQPEGF++HGQE+KV
Sbjct: 622 TFSPVTRITSIRVLISIAALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 681

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Sbjct: 682 CKLDKSLYGLKQAPKQWHEKFDNLMVSNGFRLNESD 717

[Close]

BLAST of Cmc06g0159571 vs. NCBI nr
Match: PNX67522.1 (retrotransposon protein putative Ty1-copia sub-class, partial [Trifolium pratense])

HSP 1 Score: 293.9 bits (751), Expect = 8.2e-76
Identity = 134/156 (85.90%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+VDKYKARLVAKGFRQ+ENIDFFD
Sbjct: 1   MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVDKYKARLVAKGFRQRENIDFFD 60

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISI A+ NL++HQM+VKT +LNGDLEEEIY+EQPEGF+VHGQE+KV
Sbjct: 61  TFSPVTRITSIRVLISIVAIYNLVVHQMDVKTAFLNGDLEEEIYMEQPEGFVVHGQETKV 120

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKL+KSLYGLKQAPKQWHEKFDNL++S GFK+NESD
Sbjct: 121 CKLEKSLYGLKQAPKQWHEKFDNLMVSNGFKLNESD 156

[Close]

BLAST of Cmc06g0159571 vs. NCBI nr
Match: GAU47690.1 (hypothetical protein TSUD_245810 [Trifolium subterraneum])

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 133/156 (85.26%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFD
Sbjct: 635 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 694

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISI AL NL++HQM+VKT +LNGDLEEEIY+EQPEGF++HGQE+KV
Sbjct: 695 TFSPVTRITSIRVLISIPALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 754

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Sbjct: 755 CKLDKSLYGLKQAPKQWHEKFDNLMVSNGFRLNESD 790

[Close]

BLAST of Cmc06g0159571 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.6e-44
Identity = 85/156 (54.49%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           M+SL+ N T+ LV+LP G + + CKWV + K   D  + +YKARLV KGF QK+ IDF +
Sbjct: 834 MESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDE 893

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
            FSPV ++TSIR ++S+AA  +L + Q++VKT +L+GDLEEEIY+EQPEGF V G++  V
Sbjct: 894 IFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMV 953

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKL+KSLYGLKQAP+QW+ KFD+ + S+ +    SD
Sbjct: 954 CKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSD 989

[Close]

BLAST of Cmc06g0159571 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-34
Identity = 68/151 (45.03%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 7    NRTWHLVDLPPG-CKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPV 66
            N TW LV  PP     +GC+W+  KK   DGS+++YKARLVAKG+ Q+  +D+ +TFSPV
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 67   TRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKVCKLDK 126
             + TSIR+++ +A   +  I Q++V   +L G L +++Y+ QP GFI   + + VCKL K
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRK 1101

Query: 127  SLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
            +LYGLKQAP+ W+ +  N L++ GF  + SD
Sbjct: 1102 ALYGLKQAPRAWYVELRNYLLTIGFVNSVSD 1132

[Close]

BLAST of Cmc06g0159571 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-33
Identity = 65/151 (43.05%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 7    NRTWHLV-DLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPV 66
            N TW LV   PP    +GC+W+  KK   DGS+++YKARLVAKG+ Q+  +D+ +TFSPV
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

Query: 67   TRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKVCKLDK 126
             + TSIR+++ +A   +  I Q++V   +L G L +E+Y+ QP GF+   +   VC+L K
Sbjct: 1025 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRK 1084

Query: 127  SLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
            ++YGLKQAP+ W+ +    L++ GF  + SD
Sbjct: 1085 AIYGLKQAPRAWYVELRTYLLTVGFVNSISD 1115

[Close]

BLAST of Cmc06g0159571 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-29
Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 7    NRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTFSPVT 66
            N TW +   P     +  +WV   K    G+  +YKARLVA+GF QK  ID+ +TF+PV 
Sbjct: 920  NNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVA 979

Query: 67   RITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKVCKLDKS 126
            RI+S R ++S+    NL +HQM+VKT +LNG L+EEIY+  P+G  +      VCKL+K+
Sbjct: 980  RISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKA 1039

Query: 127  LYGLKQAPKQWHEKFDNLLMSKGFKVNES 156
            +YGLKQA + W E F+  L    F VN S
Sbjct: 1040 IYGLKQAARCWFEVFEQALKECEF-VNSS 1065

[Close]

BLAST of Cmc06g0159571 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           +D+L  N+TW LV  P     +GCKWV + KL  DG++D+ KARLVAKGF Q+E I F +
Sbjct: 48  LDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVE 107

Query: 61  TFSPVTRITSIRVLISIA 79
           T+SPV R  +IR ++++A
Sbjct: 108 TYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc06g0159571 vs. ExPASy TrEMBL
Match: A0A5D3CNA1 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00710 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 146/156 (93.59%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQ+ENIDFFD
Sbjct: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQRENIDFFD 60

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISIAALNNLLIHQM+VKT +LN DLEEEIY++Q EGFIVHGQESKV
Sbjct: 61  TFSPVTRITSIRVLISIAALNNLLIHQMDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKV 120

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQA KQWHEKFDNL MSKGFKVNESD
Sbjct: 121 CKLDKSLYGLKQASKQWHEKFDNLFMSKGFKVNESD 156

[Close]

BLAST of Cmc06g0159571 vs. ExPASy TrEMBL
Match: A0A5D3DGJ1 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G001310 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.0e-77
Identity = 141/156 (90.38%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESNRTWHLVDLPP CKAIGCKWVLRKK KPDGS+DKYKARLVAKGFRQ+EN+DFFD
Sbjct: 30  MDSLESNRTWHLVDLPPPCKAIGCKWVLRKKFKPDGSIDKYKARLVAKGFRQRENMDFFD 89

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFS VTRITSIRVLISIA LNNLLIHQM+VKTT+LNGDLEEEIY+EQPEGFIV  QESKV
Sbjct: 90  TFSSVTRITSIRVLISIAVLNNLLIHQMDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKV 149

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQAPK+WH+KFDNLLMSKGFKVNES+
Sbjct: 150 CKLDKSLYGLKQAPKEWHKKFDNLLMSKGFKVNESN 185

[Close]

BLAST of Cmc06g0159571 vs. ExPASy TrEMBL
Match: A0A2Z6MWZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_189240 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.8e-76
Identity = 134/156 (85.90%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFD
Sbjct: 562 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 621

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISIAAL NL++HQM+VKT +LNGDLEEEIY+EQPEGF++HGQE+KV
Sbjct: 622 TFSPVTRITSIRVLISIAALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 681

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Sbjct: 682 CKLDKSLYGLKQAPKQWHEKFDNLMVSNGFRLNESD 717

[Close]

BLAST of Cmc06g0159571 vs. ExPASy TrEMBL
Match: A0A2K3KMQ2 (Retrotransposon protein putative Ty1-copia sub-class (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g055674 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 134/156 (85.90%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+VDKYKARLVAKGFRQ+ENIDFFD
Sbjct: 1   MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVDKYKARLVAKGFRQRENIDFFD 60

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISI A+ NL++HQM+VKT +LNGDLEEEIY+EQPEGF+VHGQE+KV
Sbjct: 61  TFSPVTRITSIRVLISIVAIYNLVVHQMDVKTAFLNGDLEEEIYMEQPEGFVVHGQETKV 120

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKL+KSLYGLKQAPKQWHEKFDNL++S GFK+NESD
Sbjct: 121 CKLEKSLYGLKQAPKQWHEKFDNLMVSNGFKLNESD 156

[Close]

BLAST of Cmc06g0159571 vs. ExPASy TrEMBL
Match: A0A2Z6PC97 (CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_245810 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.8e-76
Identity = 133/156 (85.26%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           MDSLESN+TWHLVDLPPGCK IGCKW+L+KKLKPDG+V+KYKARLVAKGFRQ+ENIDFFD
Sbjct: 635 MDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVEKYKARLVAKGFRQRENIDFFD 694

Query: 61  TFSPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQESKV 120
           TFSPVTRITSIRVLISI AL NL++HQM+VKT +LNGDLEEEIY+EQPEGF++HGQE+KV
Sbjct: 695 TFSPVTRITSIRVLISIPALYNLIVHQMDVKTAFLNGDLEEEIYMEQPEGFVIHGQETKV 754

Query: 121 CKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
           CKLDKSLYGLKQAPKQWHEKFDNL++S GF++NESD
Sbjct: 755 CKLDKSLYGLKQAPKQWHEKFDNLMVSNGFRLNESD 790

[Close]

BLAST of Cmc06g0159571 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-41
Identity = 74/158 (46.84%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 3   SLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFDTF 62
           ++E+  TW +  LPP  K IGCKWV + K   DG++++YKARLVAKG+ Q+E IDF +TF
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167

Query: 63  SPVTRITSIRVLISIAALNNLLIHQMNVKTTYLNGDLEEEIYIEQPEGFIVHGQES---- 122
           SPV ++TS++++++I+A+ N  +HQ+++   +LNGDL+EEIY++ P G+     +S    
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPN 227

Query: 123 KVCKLDKSLYGLKQAPKQWHEKFDNLLMSKGFKVNESD 157
            VC L KS+YGLKQA +QW  KF   L+  GF  + SD
Sbjct: 228 AVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD 265

[Close]

BLAST of Cmc06g0159571 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-18
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1   MDSLESNRTWHLVDLPPGCKAIGCKWVLRKKLKPDGSVDKYKARLVAKGFRQKENIDFFD 60
           +D+L  N+TW LV  P     +GCKWV + KL  DG++D+ KARLVAKGF Q+E I F +
Sbjct: 48  LDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVE 107

Query: 61  TFSPVTRITSIRVLISIA 79
           T+SPV R  +IR ++++A
Sbjct: 108 TYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc06g0159571 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11906.1	5.1e-78	93.59	putative Polyprotein [Cucumis melo var. makuwa]	[more]
TYK22685.1	1.7e-76	90.38	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
GAU21337.1	3.7e-76	85.90	hypothetical protein TSUD_189240 [Trifolium subterraneum]	[more]
PNX67522.1	8.2e-76	85.90	retrotransposon protein putative Ty1-copia sub-class, partial [Trifolium pratens...	[more]
GAU47690.1	1.4e-75	85.26	hypothetical protein TSUD_245810 [Trifolium subterraneum]	[more]

BLAST of Cmc06g0159571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.6e-44	54.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	2.1e-34	45.03	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.3e-33	43.05	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.1e-29	44.97	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	4.0e-17	50.00	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc06g0159571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNA1	2.5e-78	93.59	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177...	[more]
A0A5D3DGJ1	8.0e-77	90.38	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A2Z6MWZ1	1.8e-76	85.90	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Trifolium subt...	[more]
A0A2K3KMQ2	4.0e-76	85.90	Retrotransposon protein putative Ty1-copia sub-class (Fragment) OS=Trifolium pra...	[more]
A0A2Z6PC97	6.8e-76	85.26	CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_24...	[more]

BLAST of Cmc06g0159571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.1e-41	46.84	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.9e-18	50.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 7..153 e-value: 5.4E-55 score: 186.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..156
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0159571.1	Cmc06g0159571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004714	transmembrane receptor protein tyrosine kinase activity
molecular_function	GO:0008270	zinc ion binding