Cmc05g0138521 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0138521
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr05: 22833681 .. 22834379 (+)
RNA-Seq Expression	Cmc05g0138521
Synteny	Cmc05g0138521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCCTTTGCATTGATTATAGAGAGCTGAATAAGGTGGCAGTCAAGAACCGTTACCCATTACCCAGAATTGACGACTTGTTTGATCAGCTACAAGGAGCCACTTCTTTCACTAAGATTAATTTACGTTTAGGCTATTACCAGCTGAGGATTAGAGACAGTGATATTCCTAAGACTGCTTTTCATTCTAGATATGGGCATTACAAGTTCATTGTAATGTCTTTTGGCTTGACCAATGCCCCTGCTGTATTTATGGATCTGATGAACAGGGTATTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATCTTAATTTACTCCAAGACAGAGGCTGAGCATGAGAAGCATTTGTATCAAGTTTTGGAGACTCTTCGAGCCAATCAGCTATATGCTAAGTTTTCTAAGTGTGAGTTTTGGCTAAAGAAGGTGTCTTTTCTTGGCCATGTAGTATCTAGTGAGGGAGTCTCTATAGACCAATCAAAGATTGAAGCTGTTACGAGTTGGCCTCGACCTTCTACAGTCAGTGAAGTTCGTAGTTTTCTAGGTTTAGCAAGTTATTACAGAAGGTTCGGAGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAGTTGATCAGGAAGGGACTCCTTTTGTTTGGAGCCCAACATGTGGAAGTAGTTTCCAAAAGCTTAAGCAGAAGCTTGTGA

mRNA sequence

ATGTGCCTTTGCATTGATTATAGAGAGCTGAATAAGGTGGCAGTCAAGAACCGTTACCCATTACCCAGAATTGACGACTTGTTTGATCAGCTACAAGGAGCCACTTCTTTCACTAAGATTAATTTACGTTTAGGCTATTACCAGCTGAGGATTAGAGACAGTGATATTCCTAAGACTGCTTTTCATTCTAGATATGGGCATTACAAGTTCATTGTAATGTCTTTTGGCTTGACCAATGCCCCTGCTGTATTTATGGATCTGATGAACAGGGTATTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATCTTAATTTACTCCAAGACAGAGGCTGAGCATGAGAAGCATTTGTATCAAGTTTTGGAGACTCTTCGAGCCAATCAGCTATATGCTAAGTTTTCTAAGTGTGAGTTTTGGCTAAAGAAGGTGTCTTTTCTTGGCCATGTAGTATCTAGTGAGGGAGTCTCTATAGACCAATCAAAGATTGAAGCTGTTACGAGTTGGCCTCGACCTTCTACAGTCAGTGAAGTTCGTAGTTTTCTAGGTTTAGCAAGTTATTACAGAAGGTTCGGAGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAGTTGATCAGGAAGGGACTCCTTTTGTTTGGAGCCCAACATGTGGAAGTAGTTTCCAAAAGCTTAAGCAGAAGCTTGTGA

Coding sequence (CDS)

ATGTGCCTTTGCATTGATTATAGAGAGCTGAATAAGGTGGCAGTCAAGAACCGTTACCCATTACCCAGAATTGACGACTTGTTTGATCAGCTACAAGGAGCCACTTCTTTCACTAAGATTAATTTACGTTTAGGCTATTACCAGCTGAGGATTAGAGACAGTGATATTCCTAAGACTGCTTTTCATTCTAGATATGGGCATTACAAGTTCATTGTAATGTCTTTTGGCTTGACCAATGCCCCTGCTGTATTTATGGATCTGATGAACAGGGTATTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATCTTAATTTACTCCAAGACAGAGGCTGAGCATGAGAAGCATTTGTATCAAGTTTTGGAGACTCTTCGAGCCAATCAGCTATATGCTAAGTTTTCTAAGTGTGAGTTTTGGCTAAAGAAGGTGTCTTTTCTTGGCCATGTAGTATCTAGTGAGGGAGTCTCTATAGACCAATCAAAGATTGAAGCTGTTACGAGTTGGCCTCGACCTTCTACAGTCAGTGAAGTTCGTAGTTTTCTAGGTTTAGCAAGTTATTACAGAAGGTTCGGAGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAGTTGATCAGGAAGGGACTCCTTTTGTTTGGAGCCCAACATGTGGAAGTAGTTTCCAAAAGCTTAAGCAGAAGCTTGTGA

Protein sequence

MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTAFHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHLYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSEVRSFLGLASYYRRFGEDFSRIASPLTQLIRKGLLLFGAQHVEVVSKSLSRSL

Homology

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BLAST of Cmc05g0138521 vs. NCBI nr
Match: KAA0055583.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 417.5 bits (1072), Expect = 7.3e-113
Identity = 208/214 (97.20%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA
Sbjct: 253 MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 312

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           FH RY HYKFIVMSFGLTNAPAVFMDLM RVFKDFLDTFVIVFIDDILIYSKT AEHEKH
Sbjct: 313 FHFRYRHYKFIVMSFGLTNAPAVFMDLMYRVFKDFLDTFVIVFIDDILIYSKTRAEHEKH 372

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVS+DQSKIEAVTSWPRPSTVSE
Sbjct: 373 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDQSKIEAVTSWPRPSTVSE 432

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKGLL 215
           VRSFLGLASYYRRF EDFSRIASPLTQLIRKGLL
Sbjct: 433 VRSFLGLASYYRRFREDFSRIASPLTQLIRKGLL 466

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BLAST of Cmc05g0138521 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.9 bits (995), Expect = 6.2e-104
Identity = 187/212 (88.21%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           MCLCIDYRELNKV VKNRYPLPRIDDLFDQLQGAT F+KI+LR GY+QLRIRD DIPKT 
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           F SRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHE+H
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 790 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 821

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BLAST of Cmc05g0138521 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-103
Identity = 186/212 (87.74%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           M LCIDYRELNKV +KNRYPLPRIDDLFDQLQGAT F+KI+LR GY+QLRIRD DIPKTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           FHSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDF+D+FVIVFIDDILIYSKTEAEHE+H
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 648 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 707

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 708 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 739

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BLAST of Cmc05g0138521 vs. NCBI nr
Match: KAA0032541.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 188/212 (88.68%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           M LCIDYRELNKV VKNRYPLPRIDDLFDQLQGAT F+KI+LR GY+QLRIRD DIPKTA
Sbjct: 613 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 672

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           F SRYGHYKF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHE+H
Sbjct: 673 FRSRYGHYKFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 732

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 733 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 792

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 793 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 824

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BLAST of Cmc05g0138521 vs. NCBI nr
Match: KAA0035890.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 4.0e-103
Identity = 187/212 (88.21%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           M LCIDYRELNKV VKNRYPLPRIDDLFDQLQGAT F+KINLR GY+QLRIRD DIPKTA
Sbjct: 179 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIRDGDIPKTA 238

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           FHSRYGHY+F+VMSFGLTNAPAV MDLMNRVFKDFLD+FVIVFIDDILIYSK EAEHE+H
Sbjct: 239 FHSRYGHYEFVVMSFGLTNAPAVIMDLMNRVFKDFLDSFVIVFIDDILIYSKIEAEHEEH 298

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 299 LHQVLETLRANKLYAKFSKCEFWLRKVAFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 358

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 359 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 390

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BLAST of Cmc05g0138521 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.5e-44
Identity = 80/207 (38.65%), Postives = 133/207 (64.25%), Query Frame = 0


Query: 5   IDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTAFHSR 64
           IDYR+LN++ + +RYP+P +D++  +L     FT I+L  G++Q+ + +  I KTAF ++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHLYQV 124
            GHY+++ M FGL NAPA F   MN + +  L+   +V++DDI+I+S +  EH   +  V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 LETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSEVRSF 184
              L    L  +  KCEF  K+ +FLGH+V+ +G+  +  K++A+ S+P P+   E+R+F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 185 LGLASYYRRFGEDFSRIASPLTQLIRK 212
           LGL  YYR+F  +++ IA P+T  ++K
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKK 471

[Close]

BLAST of Cmc05g0138521 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.5e-44
Identity = 80/211 (37.91%), Postives = 137/211 (64.93%), Query Frame = 0


Query: 3   LCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTAFH 62
           + IDYR+LN++ V +R+P+P +D++  +L     FT I+L  G++Q+ +    + KTAF 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  SRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHLY 122
           +++GHY+++ M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH + L 
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 123 QVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSEVR 182
            V E L    L  +  KCEF  ++ +FLGHV++ +G+  +  KIEA+  +P P+   E++
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 183 SFLGLASYYRRFGEDFSRIASPLTQLIRKGL 214
           +FLGL  YYR+F  +F+ IA P+T+ ++K +
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNM 474

[Close]

BLAST of Cmc05g0138521 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 77/208 (37.02%), Postives = 133/208 (63.94%), Query Frame = 0


Query: 3   LCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTAFH 62
           + +D++ LN V + + YP+P I+     L  A  FT ++L  G++Q+ +++SDIPKTAF 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 63  SRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHLY 122
           +  G Y+F+ + FGL NAPA+F  +++ + ++ +     V+IDDI+++S+    H K+L 
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 123 QVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSEVR 182
            VL +L    L     K  F   +V FLG++V+++G+  D  K+ A++  P P++V E++
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 183 SFLGLASYYRRFGEDFSRIASPLTQLIR 211
            FLG+ SYYR+F +D++++A PLT L R
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc05g0138521 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-41
Identity = 87/207 (42.03%), Postives = 127/207 (61.35%), Query Frame = 0


Query: 3   LCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTAFH 62
           LC+DYR LNK  + + +PLPRID+L  ++  A  FT ++L  GY+Q+ +   D  KTAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 63  SRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHLY 122
           +  G Y++ VM FGL NAP+ F   M   F+D    FV V++DDILI+S++  EH KHL 
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 123 QVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSEVR 182
            VLE L+   L  K  KC+F  ++  FLG+ +  + ++  Q K  A+  +P P TV + +
Sbjct: 768 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 827

Query: 183 SFLGLASYYRRFGEDFSRIASPLTQLI 210
            FLG+ +YYRRF  + S+IA P+   I
Sbjct: 828 RFLGMINYYRRFIPNCSKIAQPIQLFI 852

[Close]

BLAST of Cmc05g0138521 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-41
Identity = 87/207 (42.03%), Postives = 127/207 (61.35%), Query Frame = 0


Query: 3   LCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTAFH 62
           LC+DYR LNK  + + +PLPRID+L  ++  A  FT ++L  GY+Q+ +   D  KTAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63  SRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKHLY 122
           +  G Y++ VM FGL NAP+ F   M   F+D    FV V++DDILI+S++  EH KHL 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 123 QVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSEVR 182
            VLE L+   L  K  KC+F  ++  FLG+ +  + ++  Q K  A+  +P P TV + +
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 853

Query: 183 SFLGLASYYRRFGEDFSRIASPLTQLI 210
            FLG+ +YYRRF  + S+IA P+   I
Sbjct: 854 RFLGMINYYRRFIPNCSKIAQPIQLFI 878

[Close]

BLAST of Cmc05g0138521 vs. ExPASy TrEMBL
Match: A0A5A7UI28 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00640 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.5e-113
Identity = 208/214 (97.20%), Postives = 209/214 (97.66%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA
Sbjct: 253 MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 312

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           FH RY HYKFIVMSFGLTNAPAVFMDLM RVFKDFLDTFVIVFIDDILIYSKT AEHEKH
Sbjct: 313 FHFRYRHYKFIVMSFGLTNAPAVFMDLMYRVFKDFLDTFVIVFIDDILIYSKTRAEHEKH 372

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVS+DQSKIEAVTSWPRPSTVSE
Sbjct: 373 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDQSKIEAVTSWPRPSTVSE 432

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKGLL 215
           VRSFLGLASYYRRF EDFSRIASPLTQLIRKGLL
Sbjct: 433 VRSFLGLASYYRRFREDFSRIASPLTQLIRKGLL 466

[Close]

BLAST of Cmc05g0138521 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.0e-104
Identity = 187/212 (88.21%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           MCLCIDYRELNKV VKNRYPLPRIDDLFDQLQGAT F+KI+LR GY+QLRIRD DIPKT 
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           F SRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHE+H
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 790 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 821

[Close]

BLAST of Cmc05g0138521 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.7e-104
Identity = 186/212 (87.74%), Postives = 203/212 (95.75%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           M LCIDYRELNKV +KNRYPLPRIDDLFDQLQGAT F+KI+LR GY+QLRIRD DIPKTA
Sbjct: 528 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 587

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           FHSRYGHY+F+VMSFGLTNAPAVFMDLMNRVFKDF+D+FVIVFIDDILIYSKTEAEHE+H
Sbjct: 588 FHSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEH 647

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 648 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 707

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 708 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 739

[Close]

BLAST of Cmc05g0138521 vs. ExPASy TrEMBL
Match: A0A5A7SSL3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00540 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.7e-104
Identity = 188/212 (88.68%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           M LCIDYRELNKV VKNRYPLPRIDDLFDQLQGAT F+KI+LR GY+QLRIRD DIPKTA
Sbjct: 613 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 672

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           F SRYGHYKF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHE+H
Sbjct: 673 FRSRYGHYKFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 732

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 733 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 792

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 793 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 824

[Close]

BLAST of Cmc05g0138521 vs. ExPASy TrEMBL
Match: A0A5A7SXW6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00560 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.9e-103
Identity = 187/212 (88.21%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1   MCLCIDYRELNKVAVKNRYPLPRIDDLFDQLQGATSFTKINLRLGYYQLRIRDSDIPKTA 60
           M LCIDYRELNKV VKNRYPLPRIDDLFDQLQGAT F+KINLR GY+QLRIRD DIPKTA
Sbjct: 179 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKINLRSGYHQLRIRDGDIPKTA 238

Query: 61  FHSRYGHYKFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEKH 120
           FHSRYGHY+F+VMSFGLTNAPAV MDLMNRVFKDFLD+FVIVFIDDILIYSK EAEHE+H
Sbjct: 239 FHSRYGHYEFVVMSFGLTNAPAVIMDLMNRVFKDFLDSFVIVFIDDILIYSKIEAEHEEH 298

Query: 121 LYQVLETLRANQLYAKFSKCEFWLKKVSFLGHVVSSEGVSIDQSKIEAVTSWPRPSTVSE 180
           L+QVLETLRAN+LYAKFSKCEFWL+KV+FLGHVVSSEGVS+D +KIEAVT+WPRPSTVSE
Sbjct: 299 LHQVLETLRANKLYAKFSKCEFWLRKVAFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 358

Query: 181 VRSFLGLASYYRRFGEDFSRIASPLTQLIRKG 213
           +RSFLGLA YYRRF EDFSRIASPLTQL RKG
Sbjct: 359 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKG 390

[Close]

BLAST of Cmc05g0138521 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-19
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 120 HLYQVLETLRANQLYAKFSKCEFWLKKVSFLG--HVVSSEGVSIDQSKIEAVTSWPRPST 179
           HL  VL+    +Q YA   KC F   ++++LG  H++S EGVS D +K+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLASYYRRFGEDFSRIASPLTQLIRKGLL 215
            +E+R FLGL  YYRRF +++ +I  PLT+L++K  L
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSL 99

The following BLAST results are available for this feature:

BLAST of Cmc05g0138521 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055583.1	7.3e-113	97.20	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	6.2e-104	88.21	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058812.1	1.4e-103	87.74	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032541.1	1.8e-103	88.68	pol protein [Cucumis melo var. makuwa]	[more]
KAA0035890.1	4.0e-103	88.21	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0138521 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	7.5e-44	38.65	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	7.5e-44	37.91	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.2e-41	37.02	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	1.6e-41	42.03	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.6e-41	42.03	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc05g0138521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UI28	3.5e-113	97.20	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UHL7	3.0e-104	88.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7USG7	6.7e-104	87.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5A7SSL3	8.7e-104	88.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A5A7SXW6	1.9e-103	88.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56...	[more]

BLAST of Cmc05g0138521 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.0e-19	44.33	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 2.6E-62 score: 211.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 163..227 e-value: 3.6E-18 score: 67.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..153 e-value: 4.6E-21 score: 75.3
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..79 e-value: 2.6E-62 score: 211.9
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 4..211
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 4..211
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..154 e-value: 2.77835E-76 score: 226.323
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0138521.1	Cmc05g0138521.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding