Cmc05g0135691 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0135691
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr05: 18134188 .. 18134766 (+)
RNA-Seq Expression	Cmc05g0135691
Synteny	Cmc05g0135691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGCTTAACCAATGTTCCTGCTTTATTTATGGCTCTAATGAACAGGGTGTTTAAGGATTTCTTGAACACTTTTGTTATAGTTTTTATTGATGACATTTTAGTCTACTCTAAGACAGAGGTTGAGCATGAGGAGCATTTATATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATATGCTAAGTTTTGTAAGTGTGAGTTATGGCTAAAGAAGGTGTCTTTTCTTGGCCATATCATATCAAGTGAGGGAGTCTCTGTAGACCGAACGAAGATTGAAGTTGTGACCAGTTGGCTTCGACCTTCTATAGTTAGTGAGGTTCATAGTTTTCTGGATTTGGTAGGTTATTACAGAAGGTTCGTGGAAGATTTCTCCCGTATAGCCAGTCCTTTGACTCAGTTGACCAGGAAAAGGACTTCTTTTGTTAGGAGCCTAGTATGTGAGAGTAGTTTCTGGGAGCTTAAGCAAAAGCTTGTGACTACGCAAGTCCTTATAGTGCCAGATGGATCTGGAAGTTTTGTAATCTACAGTGATGCCTCTAAGAAAGGACTGGGTTGTGTTTTGATGCAATAA

mRNA sequence

ATGTCTTTTGGCTTAACCAATGTTCCTGCTTTATTTATGGCTCTAATGAACAGGGTGTTTAAGGATTTCTTGAACACTTTTGTTATAGTTTTTATTGATGACATTTTAGTCTACTCTAAGACAGAGGTTGAGCATGAGGAGCATTTATATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATATGCTAAGTTTTGTAAGTGTGAGTTATGGCTAAAGAAGGTGTCTTTTCTTGGCCATATCATATCAAGTGAGGGAGTCTCTGTAGACCGAACGAAGATTGAAGTTGTGACCAGTTGGCTTCGACCTTCTATAGTTAGTGAGGTTCATAGTTTTCTGGATTTGGTAGGTTATTACAGAAGGTTCGTGGAAGATTTCTCCCGTATAGCCAGTCCTTTGACTCAGTTGACCAGGAAAAGGACTTCTTTTGTTAGGAGCCTAGTATGTGAGAGTAGTTTCTGGGAGCTTAAGCAAAAGCTTGTGACTACGCAAGTCCTTATAGTGCCAGATGGATCTGGAAGTTTTGTAATCTACAGTGATGCCTCTAAGAAAGGACTGGGTTGTGTTTTGATGCAATAA

Coding sequence (CDS)

ATGTCTTTTGGCTTAACCAATGTTCCTGCTTTATTTATGGCTCTAATGAACAGGGTGTTTAAGGATTTCTTGAACACTTTTGTTATAGTTTTTATTGATGACATTTTAGTCTACTCTAAGACAGAGGTTGAGCATGAGGAGCATTTATATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATATGCTAAGTTTTGTAAGTGTGAGTTATGGCTAAAGAAGGTGTCTTTTCTTGGCCATATCATATCAAGTGAGGGAGTCTCTGTAGACCGAACGAAGATTGAAGTTGTGACCAGTTGGCTTCGACCTTCTATAGTTAGTGAGGTTCATAGTTTTCTGGATTTGGTAGGTTATTACAGAAGGTTCGTGGAAGATTTCTCCCGTATAGCCAGTCCTTTGACTCAGTTGACCAGGAAAAGGACTTCTTTTGTTAGGAGCCTAGTATGTGAGAGTAGTTTCTGGGAGCTTAAGCAAAAGCTTGTGACTACGCAAGTCCTTATAGTGCCAGATGGATCTGGAAGTTTTGTAATCTACAGTGATGCCTCTAAGAAAGGACTGGGTTGTGTTTTGATGCAATAA

Protein sequence

MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANKLYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYRRFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSDASKKGLGCVLMQ

Homology

[Close]

BLAST of Cmc05g0135691 vs. NCBI nr
Match: KAA0049948.1 (pol protein [Cucumis melo var. makuwa] >TYK07680.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 5.7e-95
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTNVPA+FM LMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK
Sbjct: 1   MSFGLTNVPAVFMDLMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKFCKCELWLKKVSFLGHIISSEGVSVD TKIEVVTSWLRPSIVSEVHSFLDLVGYYR
Sbjct: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDPTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKL+TTQVLIVPDGSGSFVIYSD
Sbjct: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLMTTQVLIVPDGSGSFVIYSD 180

Query: 181 ASKKGL 187
           ASKKGL
Sbjct: 181 ASKKGL 186

[Close]

BLAST of Cmc05g0135691 vs. NCBI nr
Match: TYK05193.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 9.4e-82
Identity = 158/192 (82.29%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLETL+ANK
Sbjct: 756 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 815

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD TKIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 816 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYR 875

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRK T FV S  CESSF ELKQKLVT  VL VPDGSG+FVIYSD
Sbjct: 876 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 935

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 936 ASKKGLGCVLMQ 947

[Close]

BLAST of Cmc05g0135691 vs. NCBI nr
Match: TYK22443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 9.4e-82
Identity = 158/192 (82.29%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLET++ANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANK 310

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD  KIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRK T FV S  CESSF ELKQKLVTT VL VPDGSGSFVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTTPVLTVPDGSGSFVIYSD 430

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 431 ASKKGLGCVLMQ 442

[Close]

BLAST of Cmc05g0135691 vs. NCBI nr
Match: KAA0067502.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 9.4e-82
Identity = 158/192 (82.29%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLET++ANK
Sbjct: 676 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANK 735

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD  KIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 736 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 795

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRK T FV S  CESSF ELKQKLVTT VL VPDGSGSFVIYSD
Sbjct: 796 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTTPVLTVPDGSGSFVIYSD 855

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 856 ASKKGLGCVLMQ 867

[Close]

BLAST of Cmc05g0135691 vs. NCBI nr
Match: KAA0066469.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.1e-81
Identity = 157/192 (81.77%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           +SFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLETLQANK
Sbjct: 115 VSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANK 174

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD  KIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 175 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 234

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKRT FV S  CE SF ELKQKLVT  VL VPDGSG+FVIYSD
Sbjct: 235 RFVEDFSRIASPLTQLTRKRTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 294

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 295 ASKKGLGCVLMQ 306

[Close]

BLAST of Cmc05g0135691 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-29
Identity = 68/193 (35.23%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           M FGL N PA F   MN + +  LN   +V++DDI+++S +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           L  +  KCE   K+ +FLGHI++ +G+  +  K++ + S+  P+   E+ +FL L GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLTQLTRKRTSF-VRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYS 180
           +F+ +++ IA P+T   +KRT    + L    +F +LK  ++   +L +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGLGCVLMQ 193
           DAS   LG VL Q
Sbjct: 513 DASNLALGAVLSQ 525

[Close]

BLAST of Cmc05g0135691 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 69/193 (35.75%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           M FGL N PA F   MN + +  LN   +V++DDI+V+S +  EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           L  +  KCE   ++ +FLGH+++ +G+  +  KIE +  +  P+   E+ +FL L GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTRKRTSF-VRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYS 180
           +F+ +F+ IA P+T+  +K       +   +S+F +LK  +    +L VPD +  F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGLGCVLMQ 193
           DAS   LG VL Q
Sbjct: 514 DASDVALGAVLSQ 526

[Close]

BLAST of Cmc05g0135691 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 62/203 (30.54%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           + FGL N PA+F  +++ + ++ +     V+IDDI+V+S+    H ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           L     K      +V FLG+I++++G+  D  K+  ++    P+ V E+  FL +  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSL-----------VCESSFWELKQKLVTTQVLIVP 180
           +F++D++++A PLT LTR   + ++S                SF +LK  L ++++L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DGSGSFVIYSDASKKGLGCVLMQ 193
             +  F + +DAS   +G VL Q
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQ 452

[Close]

BLAST of Cmc05g0135691 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-22
Identity = 64/199 (32.16%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           M FGL N P+ F   M   F+D    FV V++DDIL++S++  EH +HL  VLE L+   
Sbjct: 718 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 777

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           L  K  KC+   ++  FLG+ I  + ++  + K   +  +  P  V +   FL ++ YYR
Sbjct: 778 LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 837

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFW---------ELKQKLVTTQVLIVPDG 180
           RF+ + S+IA P           ++  +C+ S W         +LK  L  + VL+  + 
Sbjct: 838 RFIPNCSKIAQP-----------IQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNN 897

Query: 181 SGSFVIYSDASKKGLGCVL 191
             ++ + +DASK G+G VL
Sbjct: 898 KANYRLTTDASKDGIGAVL 903

[Close]

BLAST of Cmc05g0135691 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-22
Identity = 64/199 (32.16%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           M FGL N P+ F   M   F+D    FV V++DDIL++S++  EH +HL  VLE L+   
Sbjct: 744 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 803

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           L  K  KC+   ++  FLG+ I  + ++  + K   +  +  P  V +   FL ++ YYR
Sbjct: 804 LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 863

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFW---------ELKQKLVTTQVLIVPDG 180
           RF+ + S+IA P           ++  +C+ S W         +LK  L  + VL+  + 
Sbjct: 864 RFIPNCSKIAQP-----------IQLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNN 923

Query: 181 SGSFVIYSDASKKGLGCVL 191
             ++ + +DASK G+G VL
Sbjct: 924 KANYRLTTDASKDGIGAVL 929

[Close]

BLAST of Cmc05g0135691 vs. ExPASy TrEMBL
Match: A0A5A7U3W1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00910 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTNVPA+FM LMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK
Sbjct: 1   MSFGLTNVPAVFMDLMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKFCKCELWLKKVSFLGHIISSEGVSVD TKIEVVTSWLRPSIVSEVHSFLDLVGYYR
Sbjct: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDPTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKL+TTQVLIVPDGSGSFVIYSD
Sbjct: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLMTTQVLIVPDGSGSFVIYSD 180

Query: 181 ASKKGL 187
           ASKKGL
Sbjct: 181 ASKKGL 186

[Close]

BLAST of Cmc05g0135691 vs. ExPASy TrEMBL
Match: A0A5A7VGL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00110 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.6e-82
Identity = 158/192 (82.29%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLET++ANK
Sbjct: 676 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANK 735

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD  KIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 736 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 795

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRK T FV S  CESSF ELKQKLVTT VL VPDGSGSFVIYSD
Sbjct: 796 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTTPVLTVPDGSGSFVIYSD 855

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 856 ASKKGLGCVLMQ 867

[Close]

BLAST of Cmc05g0135691 vs. ExPASy TrEMBL
Match: A0A5D3DFW6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00490 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.6e-82
Identity = 158/192 (82.29%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLET++ANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANK 310

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD  KIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRK T FV S  CESSF ELKQKLVTT VL VPDGSGSFVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTTPVLTVPDGSGSFVIYSD 430

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 431 ASKKGLGCVLMQ 442

[Close]

BLAST of Cmc05g0135691 vs. ExPASy TrEMBL
Match: A0A5D3BZN1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00670 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.6e-82
Identity = 158/192 (82.29%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           MSFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLETL+ANK
Sbjct: 756 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 815

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD TKIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 816 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYR 875

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRK T FV S  CESSF ELKQKLVT  VL VPDGSG+FVIYSD
Sbjct: 876 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 935

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 936 ASKKGLGCVLMQ 947

[Close]

BLAST of Cmc05g0135691 vs. ExPASy TrEMBL
Match: A0A5A7VMK1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 157/192 (81.77%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MSFGLTNVPALFMALMNRVFKDFLNTFVIVFIDDILVYSKTEVEHEEHLYQVLETLQANK 60
           +SFGLTN PA+FM LMNRVFKDFL++FVIVFIDDIL+YSKTE EHEEHL+QVLETLQANK
Sbjct: 115 VSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANK 174

Query: 61  LYAKFCKCELWLKKVSFLGHIISSEGVSVDRTKIEVVTSWLRPSIVSEVHSFLDLVGYYR 120
           LYAKF KCE WL+KV+FLGH++SSEGVSVD  KIE VT+W RPS VSE+ SFL L GYYR
Sbjct: 175 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 234

Query: 121 RFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQVLIVPDGSGSFVIYSD 180
           RFVEDFSRIASPLTQLTRKRT FV S  CE SF ELKQKLVT  VL VPDGSG+FVIYSD
Sbjct: 235 RFVEDFSRIASPLTQLTRKRTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 294

Query: 181 ASKKGLGCVLMQ 193
           ASKKGLGCVLMQ
Sbjct: 295 ASKKGLGCVLMQ 306

[Close]

BLAST of Cmc05g0135691 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-18
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 48  HLYQVLETLQANKLYAKFCKCELWLKKVSFLG--HIISSEGVSVDRTKIEVVTSWLRPSI 107
           HL  VL+  + ++ YA   KC     ++++LG  HIIS EGVS D  K+E +  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVHSFLDLVGYYRRFVEDFSRIASPLTQLTRKRTSFVRSLVCESSFWELKQKLVTTQV 167
            +E+  FL L GYYRRFV+++ +I  PLT+L  K+ S   + +   +F  LK  + T  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELL-KKNSLKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LIVPDGSGSFV 177
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc05g0135691 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049948.1	5.7e-95	97.85	pol protein [Cucumis melo var. makuwa] >TYK07680.1 pol protein [Cucumis melo var...	[more]
TYK05193.1	9.4e-82	82.29	pol protein [Cucumis melo var. makuwa]	[more]
TYK22443.1	9.4e-82	82.29	pol protein [Cucumis melo var. makuwa]	[more]
KAA0067502.1	9.4e-82	82.29	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066469.1	2.1e-81	81.77	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0135691 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.3e-29	35.23	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.1e-27	35.75	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.6e-23	30.54	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	5.1e-22	32.16	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.7e-22	32.16	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc05g0135691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3W1	2.8e-95	97.85	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00910 PE...	[more]
A0A5A7VGL6	4.6e-82	82.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]
A0A5D3DFW6	4.6e-82	82.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold53...	[more]
A0A5D3BZN1	4.6e-82	82.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5A7VMK1	1.0e-81	81.77	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=...	[more]

BLAST of Cmc05g0135691 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.7e-18	38.93	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 149..192 e-value: 5.5E-9 score: 35.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 4.3E-31 score: 109.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 91..183 e-value: 2.4E-22 score: 80.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..82 e-value: 1.6E-14 score: 53.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.896116
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..164
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..164
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 9.99114E-35 score: 118.852
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0135691.1	Cmc05g0135691.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding