Cmc05g0132261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0132261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr05: 12136557 .. 12137045 (+)
RNA-Seq Expression	Cmc05g0132261
Synteny	Cmc05g0132261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAAGCACCAAGACAGAAACCAGCAGGTCTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAATGTGTCCATGGATTTCATTACAGGACTGCCTAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACACGCTTACCAAATCAGCACACTTCATTCCGGGTAAATCCACCTATACTGCTACTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTTCATGGAGTGCTAGTGTCGATCGTTTCTGATAGAGATGCTCGGTTCACTTCCAAATTCTGGAAGGGTTTGCAGGCTGCTATGGGCACGAGGTTAGACTTTAGTACGACTTTTCACCCACAGACCGATGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGTTTGTGCATTTGATGGAAATTTCTTATAA

mRNA sequence

ATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAAGCACCAAGACAGAAACCAGCAGGTCTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAATGTGTCCATGGATTTCATTACAGGACTGCCTAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACACGCTTACCAAATCAGCACACTTCATTCCGGGTAAATCCACCTATACTGCTACTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTTCATGGAGTGCTAGTGTCGATCGTTTCTGATAGAGATGCTCGGTTCACTTCCAAATTCTGGAAGGGTTTGCAGGCTGCTATGGGCACGAGGTTAGACTTTAGTACGACTTTTCACCCACAGACCGATGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGTTTGTGCATTTGATGGAAATTTCTTATAA

Coding sequence (CDS)

ATGAAGAGGGAGGTGGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAAGCACCAAGACAGAAACCAGCAGGTCTATTACAACCCTTGAGCGTACCGGAATGGAAGTGGGAAAATGTGTCCATGGATTTCATTACAGGACTGCCTAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACACGCTTACCAAATCAGCACACTTCATTCCGGGTAAATCCACCTATACTGCTACTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGACTTCATGGAGTGCTAGTGTCGATCGTTTCTGATAGAGATGCTCGGTTCACTTCCAAATTCTGGAAGGGTTTGCAGGCTGCTATGGGCACGAGGTTAGACTTTAGTACGACTTTTCACCCACAGACCGATGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGTTTGTGCATTTGATGGAAATTTCTTATAA

Protein sequence

MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFDGNFL

Homology

[Close]

BLAST of Cmc05g0132261 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 534 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 593

Query: 61  WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
           WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 594 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 653

Query: 121 AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
            AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 654 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 691

[Close]

BLAST of Cmc05g0132261 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1366 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 1425

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
            WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 1426 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 1485

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
             AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 1486 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 1523

[Close]

BLAST of Cmc05g0132261 vs. NCBI nr
Match: KAA0053631.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 21  MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 80

Query: 61  WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
           WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 81  WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 140

Query: 121 AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
            AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 141 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 178

[Close]

BLAST of Cmc05g0132261 vs. NCBI nr
Match: KAA0064005.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 229 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 288

Query: 61  WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
           WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 289 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 348

Query: 121 AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
            AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 349 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 386

[Close]

BLAST of Cmc05g0132261 vs. NCBI nr
Match: KAA0066456.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1109 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 1168

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
            WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 1169 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 1228

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
             AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 1229 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 1266

[Close]

BLAST of Cmc05g0132261 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-28
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I
Sbjct: 1131 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1190

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
             VVVD  +K AHFI  + T  AT+   L    I   HG   +I SDRD R T+  ++ L 
Sbjct: 1191 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELT 1250

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCA 157
              +G +   S+  HPQTDGQ+ER  Q L  +LR  A
Sbjct: 1251 KRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYA 1286

[Close]

BLAST of Cmc05g0132261 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            ++  + +++  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I
Sbjct: 1157 LQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMI 1216

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
             VVVD  +K AHFI  + T  AT+   L    I   HG   +I SDRD R T+  ++ L 
Sbjct: 1217 LVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELT 1276

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR 154
              +G +   S+  HPQTDGQ+ER  Q L  +LR
Sbjct: 1277 KRLGIKSTMSSANHPQTDGQSERTIQTLNRLLR 1309

[Close]

BLAST of Cmc05g0132261 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 62/161 (38.51%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
            +VVVD  +K A  +P   + TA + A+++   ++   G    I++D D  FTS+ WK   
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN 161
                  + FS  + PQTDGQTER NQ +E +LR VC+   N
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105

[Close]

BLAST of Cmc05g0132261 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 62/161 (38.51%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
            +VVVD  +K A  +P   + TA + A+++   ++   G    I++D D  FTS+ WK   
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN 161
                  + FS  + PQTDGQTER NQ +E +LR VC+   N
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105

[Close]

BLAST of Cmc05g0132261 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 62/161 (38.51%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  +
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNAL 1005

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
            +VVVD  +K A  +P   + TA + A+++   ++   G    I++D D  FTS+ WK   
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFA 1065

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLR-VCAFDGN 161
                  + FS  + PQTDGQTER NQ +E +LR VC+   N
Sbjct: 1066 HKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105

[Close]

BLAST of Cmc05g0132261 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.3e-81
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 229 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 288

Query: 61  WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
           WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 289 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 348

Query: 121 AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
            AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 349 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 386

[Close]

BLAST of Cmc05g0132261 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.3e-81
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 419 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 478

Query: 61  WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
           WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 479 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 538

Query: 121 AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
            AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 539 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 576

[Close]

BLAST of Cmc05g0132261 vs. ExPASy TrEMBL
Match: A0A5A7UDJ5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.3e-81
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
           MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 369 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 428

Query: 61  WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
           WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 429 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 488

Query: 121 AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
            AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 489 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 526

[Close]

BLAST of Cmc05g0132261 vs. ExPASy TrEMBL
Match: A0A5A7VJE2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005560 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.3e-81
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1109 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 1168

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
            WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 1169 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 1228

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
             AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 1229 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 1266

[Close]

BLAST of Cmc05g0132261 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.3e-81
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1    MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVI 60
            MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLRGFTVI
Sbjct: 1366 MKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVI 1425

Query: 61   WVVVDTLTKSAHFIPGKSTYTATKWAQLYMSEIVRLHGVLVSIVSDRDARFTSKFWKGLQ 120
            WVVVD LTKSAHF+PGKSTYTA+KWAQLYMSEIVRLHGV VSIVSDRDARFTSKFWKGLQ
Sbjct: 1426 WVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ 1485

Query: 121  AAMGTRLDFSTTFHPQTDGQTERLNQVLEDMLRVCAFD 159
             AMGTRLDFST FHPQTDGQTERLNQVLEDMLR CA +
Sbjct: 1486 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALE 1523

The following BLAST results are available for this feature:

BLAST of Cmc05g0132261 vs. NCBI nr


Match Name	E-value	Identity	Description
AAO45752.1	1.5e-80	93.67	pol protein [Cucumis melo subsp. melo]	[more]
TYK01613.1	1.5e-80	93.67	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053631.1	1.5e-80	93.67	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064005.1	1.5e-80	93.67	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066456.1	1.5e-80	93.67	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0132261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	5.3e-28	40.38	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.2e-27	40.52	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.9e-26	38.51	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.9e-26	38.51	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.9e-26	38.51	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc05g0132261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDP3	7.3e-81	93.67	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7SZD6	7.3e-81	93.67	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]
A0A5A7UDJ5	7.3e-81	93.67	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE...	[more]
A0A5A7VJE2	7.3e-81	93.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5D3BPI1	7.3e-81	93.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc05g0132261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 29..160 e-value: 7.7E-31 score: 108.9
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 5..154
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 31..162 score: 15.019609
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 32..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0132261.1	Cmc05g0132261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding