Cmc05g0131061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0131061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr05: 10065418 .. 10065906 (+)
RNA-Seq Expression	Cmc05g0131061
Synteny	Cmc05g0131061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTATTTTTTATGCACATATTGTTGGAAGCTTATTGTATGCACAGACTTGCACTAGACTAGACATCAATTTTGTTGTGAGTATGCTAGGCAGGTATCAAAGTAATTCCGGAATGGATCATTGGAAAGCTGTAAAGAAAGTTTTAAGGTATTTACAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATAATCTTGAGGTGATTGGATATTCAGATTCAGATTTTGCTAGATGTGTGGATACAAGAAAGTCCACTTTTGGCTATTTGTTCCTATTAGCTGAAGGAGCAATTTCATGGAAAATTGCAAAGCAGTCTATTATAGCTGCATCCACTATGGAAGTTGAATTTGTAGCATGCTTTGAGGCTATAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCAACAGTACTGCCAAGCTACCGAGAATTTATGGTGATAATTCTGCAGCAGTTTTCTTCTAA

mRNA sequence

ATGGAAACTATTTTTTATGCACATATTGTTGGAAGCTTATTGTATGCACAGACTTGCACTAGACTAGACATCAATTTTGTTGTGAGTATGCTAGGCAGGTATCAAAGTAATTCCGGAATGGATCATTGGAAAGCTGTAAAGAAAGTTTTAAGGTATTTACAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATAATCTTGAGGTGATTGGATATTCAGATTCAGATTTTGCTAGATGTGTGGATACAAGAAAGTCCACTTTTGGCTATTTGTTCCTATTAGCTGAAGGAGCAATTTCATGGAAAATTGCAAAGCAGTCTATTATAGCTGCATCCACTATGGAAGTTGAATTTGTAGCATGCTTTGAGGCTATAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCAACAGTACTGCCAAGCTACCGAGAATTTATGGTGATAATTCTGCAGCAGTTTTCTTCTAA

Coding sequence (CDS)

ATGGAAACTATTTTTTATGCACATATTGTTGGAAGCTTATTGTATGCACAGACTTGCACTAGACTAGACATCAATTTTGTTGTGAGTATGCTAGGCAGGTATCAAAGTAATTCCGGAATGGATCATTGGAAAGCTGTAAAGAAAGTTTTAAGGTATTTACAAGGAACAAAGGATTATATGCTTACTTACAAGAGATCTGATAATCTTGAGGTGATTGGATATTCAGATTCAGATTTTGCTAGATGTGTGGATACAAGAAAGTCCACTTTTGGCTATTTGTTCCTATTAGCTGAAGGAGCAATTTCATGGAAAATTGCAAAGCAGTCTATTATAGCTGCATCCACTATGGAAGTTGAATTTGTAGCATGCTTTGAGGCTATAATTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCAACAGTACTGCCAAGCTACCGAGAATTTATGGTGATAATTCTGCAGCAGTTTTCTTCTAA

Protein sequence

METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYMLTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEFVACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF

Homology

[Close]

BLAST of Cmc05g0131061 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 280.8 bits (717), Expect = 7.5e-72
Identity = 141/162 (87.04%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLLYAQTCTR DI+F V MLGRYQSN GMDHWKA KKVLRYL+GTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYM 60

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD+LEVIGYSDSDFA CVDTRKSTFGYLFLLAEGAISWK AKQSIIAAS ME EF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAEF 120

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACFEA +HGLWLRNFISGLGIV+S AK  RIY DNSAAVFF
Sbjct: 121 VACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFF 162

[Close]

BLAST of Cmc05g0131061 vs. NCBI nr
Match: KAA0061426.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.7e-71
Identity = 138/162 (85.19%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLLYAQTCTR DI+F V MLGRYQSN GMDHWK  KKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD+LEVIGYSDSDFA CVDTRKSTFGYLFLLAEGAISW+ AKQSII AS+ME EF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAEF 120

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACFEA +HGLWLRNFISGLGIV+S AKL RIY DNS A+FF
Sbjct: 121 VACFEATVHGLWLRNFISGLGIVDSIAKLLRIYCDNSTAIFF 162

[Close]

BLAST of Cmc05g0131061 vs. NCBI nr
Match: KAA0032876.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.5e-69
Identity = 137/162 (84.57%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLL AQTCTR DI+F V MLGRYQSN GMDHWK  KKVLRYLQGTKDYM
Sbjct: 72  METIPYASIVGSLLCAQTCTRPDISFAVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 131

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD+LEVIGYSDSDF  CVDTRKSTFGYLFLLAEGAISWK  KQSIIAASTMEVEF
Sbjct: 132 LTYKRSDHLEVIGYSDSDFTGCVDTRKSTFGYLFLLAEGAISWKSVKQSIIAASTMEVEF 191

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACFEA +HGLWL NFISGLGIV+S AK  RIY DNS  VFF
Sbjct: 192 VACFEATVHGLWLWNFISGLGIVDSIAKPLRIYCDNSVTVFF 233

[Close]

BLAST of Cmc05g0131061 vs. NCBI nr
Match: XP_031127470.1 (secreted RxLR effector protein 161-like [Ipomoea triloba])

HSP 1 Score: 268.5 bits (685), Expect = 3.8e-68
Identity = 132/162 (81.48%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           ME I YA +VGSL+YAQTCTR DI+F V MLGRYQSN GMDHWKA KKVLRYLQGTK+YM
Sbjct: 32  MENIPYASVVGSLMYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKEYM 91

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD LEVIGY+DSDFA C+DTRKSTFGYLFLLAEGAISWK AKQ++IAASTME EF
Sbjct: 92  LTYKRSDRLEVIGYTDSDFAGCLDTRKSTFGYLFLLAEGAISWKSAKQTVIAASTMEAEF 151

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACF A  HGLWLRNFISGLGIV+S AK  +IY DN+AAVFF
Sbjct: 152 VACFMATNHGLWLRNFISGLGIVDSIAKPLKIYCDNAAAVFF 193

[Close]

BLAST of Cmc05g0131061 vs. NCBI nr
Match: XP_031120318.1 (secreted RxLR effector protein 161-like [Ipomoea triloba])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 131/162 (80.86%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           ME I YA +VGSL+YAQTCTR DI+F V ML RYQSN GMDHWKA KKVLRYLQGTK+YM
Sbjct: 1   MENIPYASVVGSLMYAQTCTRPDISFAVGMLSRYQSNPGMDHWKAAKKVLRYLQGTKEYM 60

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD LEVIGY+DSDFA C+DTRKSTFGYLFLLAEGAISWK AKQ++IAASTME EF
Sbjct: 61  LTYKRSDRLEVIGYTDSDFAGCLDTRKSTFGYLFLLAEGAISWKSAKQTVIAASTMEAEF 120

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACF A  HGLWLRNFISGLGIV+S AK  +IY DN+AAVFF
Sbjct: 121 VACFMATNHGLWLRNFISGLGIVDSIAKPLKIYCDNAAAVFF 162

[Close]

BLAST of Cmc05g0131061 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-27
Identity = 66/160 (41.25%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 1    METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
            M  + Y+  VGSL+YA  CTR DI   V ++ R+  N G +HW+AVK +LRYL+GT    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
            L +  SD + + GY+D+D A  +D RKS+ GYLF  + GAISW+   Q  +A ST E E+
Sbjct: 1166 LCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEY 1225

Query: 121  VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAV 161
            +A  E     +WL+ F+  LG+     K   +Y D+ +A+
Sbjct: 1226 IAATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAI 1261

[Close]

BLAST of Cmc05g0131061 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 4.6e-24
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 9    IVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYMLTYKRSDN 68
            ++G L+Y   CTR D+   V++L RY S +  + W+ +K+VLRYL+GT D  L +K++  
Sbjct: 1184 LIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLA 1243

Query: 69   LE--VIGYSDSDFARCVDTRKSTFGYLFLLAE-GAISWKIAKQSIIAASTMEVEFVACFE 128
             E  +IGY DSD+A     RKST GYLF + +   I W   +Q+ +AAS+ E E++A FE
Sbjct: 1244 FENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFE 1303

Query: 129  AIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAV 161
            A+   LWL+  ++ + I        +IY DN   +
Sbjct: 1304 AVREALWLKFLLTSINI--KLENPIKIYEDNQGCI 1336

[Close]

BLAST of Cmc05g0131061 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.6e-24
Identity = 54/133 (40.60%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           M+ + Y   VG+++Y    TR D+   V +L ++ S+    HW+A+K+VLRYLQ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           L + R+   +++GYSD+D+A  V++R+ST GYLF L  G +SW+  KQ  +A S+ E E+
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VACFEAIIHGLWL 134
           +A  EA    +WL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc05g0131061 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-19
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 0


Query: 6    YAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYMLTYKR 65
            Y  IVGSL Y    TR D+++ V+ L +Y      DHW A+K+VLRYL GT D+ +  K+
Sbjct: 1228 YRGIVGSLQYL-AFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEFVACFE 125
             + L +  YSD+D+A   D   ST GY+  L    ISW   KQ  +  S+ E E+ +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  AIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVF 162
                  W+ + ++ LGI    +  P IY DN  A +
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGATY 1380

[Close]

BLAST of Cmc05g0131061 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = 0


Query: 6    YAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYMLTYKR 65
            Y  IVGSL Y    TR DI++ V+ L ++      +H +A+K++LRYL GT ++ +  K+
Sbjct: 1245 YRGIVGSLQYL-AFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEFVACFE 125
             + L +  YSD+D+A   D   ST GY+  L    ISW   KQ  +  S+ E E+ +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  AIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVF 162
                  W+ + ++ LGI     + P IY DN  A +
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATY 1397

[Close]

BLAST of Cmc05g0131061 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.6e-72
Identity = 141/162 (87.04%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLLYAQTCTR DI+F V MLGRYQSN GMDHWKA KKVLRYL+GTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYM 60

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD+LEVIGYSDSDFA CVDTRKSTFGYLFLLAEGAISWK AKQSIIAAS ME EF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAEF 120

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACFEA +HGLWLRNFISGLGIV+S AK  RIY DNSAAVFF
Sbjct: 121 VACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFF 162

[Close]

BLAST of Cmc05g0131061 vs. ExPASy TrEMBL
Match: A0A5A7V4M2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00040 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 8.1e-72
Identity = 138/162 (85.19%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLLYAQTCTR DI+F V MLGRYQSN GMDHWK  KKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD+LEVIGYSDSDFA CVDTRKSTFGYLFLLAEGAISW+ AKQSII AS+ME EF
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAEF 120

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACFEA +HGLWLRNFISGLGIV+S AKL RIY DNS A+FF
Sbjct: 121 VACFEATVHGLWLRNFISGLGIVDSIAKLLRIYCDNSTAIFF 162

[Close]

BLAST of Cmc05g0131061 vs. ExPASy TrEMBL
Match: A0A5A7SS51 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00410 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 137/162 (84.57%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLL AQTCTR DI+F V MLGRYQSN GMDHWK  KKVLRYLQGTKDYM
Sbjct: 72  METIPYASIVGSLLCAQTCTRPDISFAVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 131

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD+LEVIGYSDSDF  CVDTRKSTFGYLFLLAEGAISWK  KQSIIAASTMEVEF
Sbjct: 132 LTYKRSDHLEVIGYSDSDFTGCVDTRKSTFGYLFLLAEGAISWKSVKQSIIAASTMEVEF 191

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACFEA +HGLWL NFISGLGIV+S AK  RIY DNS  VFF
Sbjct: 192 VACFEATVHGLWLWNFISGLGIVDSIAKPLRIYCDNSVTVFF 233

[Close]

BLAST of Cmc05g0131061 vs. ExPASy TrEMBL
Match: A0A5A7UNB8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00650 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.2e-68
Identity = 132/162 (81.48%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLLYA TCTRLDI F + MLGRYQSN GMDHWKA KKVLRYLQGTKDYM
Sbjct: 72  METIPYAFIVGSLLYALTCTRLDIGFAMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYM 131

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
            TYKR D+LEVIGYSD DF RCVDTRKSTFGYLFLLA+G  SWK  K SIIAASTM+ EF
Sbjct: 132 FTYKRFDHLEVIGYSDLDFTRCVDTRKSTFGYLFLLAKGVNSWKSVKHSIIAASTMDAEF 191

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAVFF 163
           VACFEA +HGLWLRNFI GLGIVNS AK  RIY DNSA VFF
Sbjct: 192 VACFEATVHGLWLRNFILGLGIVNSVAKPLRIYCDNSAVVFF 233

[Close]

BLAST of Cmc05g0131061 vs. ExPASy TrEMBL
Match: A0A5A7TTF5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001050 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.5e-67
Identity = 131/153 (85.62%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   METIFYAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYM 60
           METI YA IVGSLLYAQTCTR DI+F V MLGRYQSN GMDHWKA KKVLRYLQGTKDYM
Sbjct: 524 METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYM 583

Query: 61  LTYKRSDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEF 120
           LTYKRSD+LEVIGYSDSDF  CVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTME EF
Sbjct: 584 LTYKRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEAEF 643

Query: 121 VACFEAIIHGLWLRNFISGLGIVNSTAKLPRIY 154
           VACFEA +HGLWLRNFISGLGIV+S   +   Y
Sbjct: 644 VACFEATVHGLWLRNFISGLGIVDSAKHMELKY 676

[Close]

BLAST of Cmc05g0131061 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-22
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 6   YAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYMLTYKR 65
           Y  ++G L+Y Q  TRLDI+F V+ L ++     + H +AV K+L Y++GT    L Y  
Sbjct: 378 YRRLIGRLMYLQ-ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  SDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEFVACFE 125
              +++  +SD+ F  C DTR+ST GY   L    ISWK  KQ +++ S+ E E+ A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 AIIHGLWLRNFISGLGIVNSTAKLPRIYGDNSAAV 161
           A    +WL  F   L +  S   L  ++ DN+AA+
Sbjct: 498 ATDEMMWLAQFFRELQLPLSKPTL--LFCDNTAAI 529

[Close]

BLAST of Cmc05g0131061 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-13
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 6   YAHIVGSLLYAQTCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYMLTYKR 65
           +  IVG+L Y  T TR DI++ V+++ +      +  +  +K+VLRY++GT  + L   +
Sbjct: 100 FRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  SDNLEVIGYSDSDFARCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEVEFVA 123
           +  L V  + DSD+A C  TR+ST G+   L    ISW   +Q  ++ S+ E E+ A
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRA 215

[Close]

BLAST of Cmc05g0131061 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-10
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 18 TCTRLDINFVVSMLGRYQSNSGMDHWKAVKKVLRYLQGTKDYMLTYKRSDNLEVIGYSDS 77
          T TR D+ F V+ L ++ S S     +AV KVL Y++GT    L Y  + +L++  ++DS
Sbjct: 4  TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADS 63

Query: 78 DFARCVDTRKSTFGYLFLL 97
          D+A C DTR+S  G+  L+
Sbjct: 64 DWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc05g0131061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051161.1	7.5e-72	87.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061426.1	1.7e-71	85.19	F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]	[more]
KAA0032876.1	3.5e-69	84.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_031127470.1	3.8e-68	81.48	secreted RxLR effector protein 161-like [Ipomoea triloba]	[more]
XP_031120318.1	1.9e-67	80.86	secreted RxLR effector protein 161-like [Ipomoea triloba]	[more]

BLAST of Cmc05g0131061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.6e-27	41.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.6e-24	38.71	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	4.6e-24	40.60	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	3.4e-19	36.54	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.6e-16	33.97	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc05g0131061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCB2	3.6e-72	87.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M2	8.1e-72	85.19	F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7SS51	1.7e-69	84.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UNB8	9.2e-68	81.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TTF5	3.5e-67	85.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc05g0131061 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.9e-22	36.13	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.4e-13	34.19	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	5.1e-10	39.24	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 10..96
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 10..96
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 72..160 e-value: 5.23734E-34 score: 114.873

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0131061.1	Cmc05g0131061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003935	GTP cyclohydrolase II activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding