Cmc05g0127631 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0127631
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr05: 5067464 .. 5068872 (+)
RNA-Seq ExpressionCmc05g0127631
SyntenyCmc05g0127631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCAACAAAATCCCTCTTCTCAGCTTTTCTATCTTGGTATCAAAGCAAGAAAAATGGCTAACGCTTCTCTCATTGCCTTACCGTCGATCACCCCAAACTTTAGCACTCCTTCATTAGATCAATTGTTGAATCAACTTTCCTCCACCAAGCTTGACCGAACAAACTATCTTTTATGGAAGACATTGCCACGCCCAATCTTGAAAAACTATAAGCTAGAGAGGTATATATCTGACGGGTGAAACTCCCTGTCCCCCAAAATTTCTCTCATTTGCCACAGGTGAAACCTCAGAAAAGTTCGACGATGAAGCTCCAATTGCAGTTGATTCAAGTTCAATAGCTCTCCCTTCTAGTTCGGCAGCCCCAAAAGTCGTGAACCCAAGGTATAAGCAATGGGCCACCTCCAATCTACTTCTACTTGGATGGATTTATAACTCCATGGTGCCAGATGTAGTACTTCAGCTCTTGGGATTTAATACAACAAAGGACCTTTGGGAGGCCATTCAAGATTTATTTGGAGTTCAATCAAGGGCTAAAGAAGATTTTCTTTGCCACATCTTCCAAACTACTTGAAGGGGTAATTATAAGATGGAAGATTATTTGAGAATTATGAAAACTAACACGAATAATCTTGGCCAAACCGGGAGTCCTAACCATCTTCACCTCTAATTTCATTAGGGTTATTGGAGCTTAATGAAGTTTACAATTGCGTCACTATTGTTATCCAAGGCAAACCCAACATCTCATGGCTAGATATGCACTCTAAACTACTGATTTTTGAAAAGCGTCTCGAACATCAAAAATTCACAAAGAAATCCAAAAAATATTATCTTAAATGTCGTTGTCAATATGGTGCAAAACAGAGGGAATGATACTTGACAGAACTTTAGTTCTTATTAGTTTGGTGGGAACCGATCTAATCAAAATGGACAGTGCAGTAGGAATACCTTCAATGGTCGGGGACGTGGTTGAGGAAGAGGTAACAAACGTACATGTCAGGTATGTAGAAAATATGGACACTTAGCTTTAGTTTGCTATAACAGATACAGTAAAGAGTTTGCTGAAAATGTAAATCAGAATAGGGAACATACCCTAAATCAGAATGGAAACCAAAATCCTGCTATTGCCTTTGTCGCTACTCAGAACTCAACCTCATTTGCCACACTTGAAACTGTAGTTGGTATAAATTGGTATGTTGATAGTGGTGCCACAAACCATGTTACATTTGATCATTCAAACTTGTGGAATGTTGCTAATTATTCTGGTAATAAAATCGTAGTTGTTAGTAATGGAAATAAATTACATATATCATGTGTGGGCTGTGCAAGTTTAATTGATGAAAAGAATTGTTTAAGACTCAAAAATATTTTGTGTGTGCCTGAAATTAAGAAAATTTTGGTTAGTGTGTAA

mRNA sequence

TTCTCAACAAAATCCCTCTTCTCAGCTTTTCTATCTTGGTATCAAAGCAAGAAAAATGGCTAACGCTTCTCTCATTGCCTTACCGTCGATCACCCCAAACTTTAGCACTCCTTCATTAGATCAATTGTTGAATCAACTTTCCTCCACCAAGCTTGACCGAACAAACTATCTTTTATGGAAGACATTGCCACGCCCAATCTTGAAAAACTATAAGCTAGAGAGGTATATATCTGACGGGTGAAACTCCCTGTCCCCCAAAATTTCTCTCATTTGCCACAGGTGAAACCTCAGAAAAGTTCGACGATGAAGCTCCAATTGCAGTTGATTCAAGTTCAATAGCTCTCCCTTCTAGTTCGGCAGCCCCAAAAGTCGTGAACCCAAGGTATAAGCAATGGGCCACCTCCAATCTACTTCTACTTGGATGGATTTATAACTCCATGGTGCCAGATGTAGTACTTCAGCTCTTGGGATTTAATACAACAAAGGACCTTTGGGAGGCCATTCAAGATTTATTTGGAGTTCAATCAAGGGCTAAAGAAGATTTTCTTTGCCACATCTTCCAAACTACTTGAAGGGGTAATTATAAGATGGAAGATTATTTGAGAATTATGAAAACTAACACGAATAATCTTGGCCAAACCGGGAGTCCTAACCATCTTCACCTCTAATTTCATTAGGGTTATTGGAGCTTAATGAAGTTTACAATTGCGTCACTATTGTTATCCAAGGCAAACCCAACATCTCATGGCTAGATATGCACTCTAAACTACTGATTTTTGAAAAGCGTCTCGAACATCAAAAATTCACAAAGAAATCCAAAAAATATTATCTTAAATGTCGTTGTCAATATGGTGCAAAACAGAGGGAATGATACTTGACAGAACTTTAGTTCTTATTAGTTTGGTGGGAACCGATCTAATCAAAATGGACAGTGCAGTAGGAATACCTTCAATGGTCGGGGACGTGGTTGAGGAAGAGGTAACAAACGTACATGTCAGGGAACATACCCTAAATCAGAATGGAAACCAAAATCCTGCTATTGCCTTTGTCGCTACTCAGAACTCAACCTCATTTGCCACACTTGAAACTGTAGTTGGTATAAATTGGTATGTTGATAGTGGTGCCACAAACCATGTTACATTTGATCATTCAAACTTGTGGAATGTTGCTAATTATTCTGGTAATAAAATCGTAGTTGTTAGTAATGGAAATAAATTACATATATCATGTGTGGGCTGTGCAAGTTTAATTGATGAAAAGAATTGTTTAAGACTCAAAAATATTTTGTGTGTGCCTGAAATTAAGAAAATTTTGGTTAGTGTGTAA

Coding sequence (CDS)

ATGTCGTTGTCAATATGGTGCAAAACAGAGGGAATGATACTTGACAGAACTTTAGTTCTTATTAGTTTGGTGGGAACCGATCTAATCAAAATGGACAGTGCAGTAGGAATACCTTCAATGGTCGGGGACGTGGTTGAGGAAGAGGTAACAAACGTACATGTCAGGGAACATACCCTAAATCAGAATGGAAACCAAAATCCTGCTATTGCCTTTGTCGCTACTCAGAACTCAACCTCATTTGCCACACTTGAAACTGTAGTTGGTATAAATTGGTATGTTGATAGTGGTGCCACAAACCATGTTACATTTGATCATTCAAACTTGTGGAATGTTGCTAATTATTCTGGTAATAAAATCGTAGTTGTTAGTAATGGAAATAAATTACATATATCATGTGTGGGCTGTGCAAGTTTAATTGATGAAAAGAATTGTTTAAGACTCAAAAATATTTTGTGTGTGCCTGAAATTAAGAAAATTTTGGTTAGTGTGTAA

Protein sequence

MSLSIWCKTEGMILDRTLVLISLVGTDLIKMDSAVGIPSMVGDVVEEEVTNVHVREHTLNQNGNQNPAIAFVATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYSGNKIVVVSNGNKLHISCVGCASLIDEKNCLRLKNILCVPEIKKILVSV
Homology
BLAST of Cmc05g0127631 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-31
Identity = 89/143 (62.24%), Postives = 98/143 (68.53%), Query Frame = 0

Query: 18  LVLISLVGTDLIKMDSAVGIPSMVGDVVEEEVTNVHVREHTLNQNGNQNPAIAFVATQNS 77
           L+  +LV   LIKM+S   +  M  DVVEEE      R    NQNG Q P  AF+ TQ S
Sbjct: 198 LIFENLVEIVLIKMESETIL--MAADVVEEE-----NRGFNPNQNGKQIPDDAFITTQKS 257

Query: 78  TSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYSGNKIVVVSNGNKLHISCVGCAS 137
           +S AT ETVV  N YVDSGATNHVT DHSNLWN+ +YSGN+ VVV N NKL ISCVG AS
Sbjct: 258 SSLATPETVVDTNRYVDSGATNHVTSDHSNLWNIDDYSGNENVVVGNENKLQISCVGYAS 317

Query: 138 LIDEKNCLRLKNILCVPEIKKIL 161
           L D KNCLRL  ILCVPEIKK L
Sbjct: 318 LTDGKNCLRLDKILCVPEIKKNL 333

BLAST of Cmc05g0127631 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-20
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 56  EHTLNQNGNQNPAIAFVATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYS 115
           EH+ N + + NPA+ FV+TQN+T FAT +TVV  NWY+DSGATNHVT + SN+ N   YS
Sbjct: 293 EHSSNGSVSPNPAV-FVSTQNATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPTEYS 352

Query: 116 GNKIVVVSNGNKLHISCVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
           G + V V NGN+L+IS VG   L D    L LKNILCVP+I K L+SV
Sbjct: 353 GIEKVTVGNGNRLNISYVGNTCLTDGDKSLVLKNILCVPDIAKNLISV 399

BLAST of Cmc05g0127631 vs. NCBI nr
Match: XP_016901889.1 (PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 62/111 (55.86%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 55  REHTLNQNGN--QNPAIAFVATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVA 114
           R +  N  GN  QNP  AFV TQN+  FA  E VV  NWYVDSGATN+VT D+ NL N+ 
Sbjct: 32  RGYNTNTLGNSYQNPT-AFVTTQNNNPFAMQEIVVDSNWYVDSGATNYVTLDYLNLSNIT 91

Query: 115 NYSGNKIVVVSNGNKLHISCVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
            YS  +   V NGNKL I CVG   L D  N L+L+N+LCVP I K LVSV
Sbjct: 92  EYSSIEHFSVGNGNKLQIHCVGNFYLSDGNNSLKLENVLCVPNITKNLVSV 141

BLAST of Cmc05g0127631 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-17
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 0

Query: 72  VATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYSGNKIVVVSNGNKLHIS 131
           V  Q+   FAT +TV+ +NWY+DSGATNH+T ++SNL N + YSG + ++V NG+ LHIS
Sbjct: 271 VTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSNLSNPSEYSGIEKIMVGNGDSLHIS 330

Query: 132 CVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
            +G A L D  N L LKN+LCVP+I K LVSV
Sbjct: 331 YIGNAYLTDGINGLNLKNVLCVPDITKNLVSV 362

BLAST of Cmc05g0127631 vs. NCBI nr
Match: KAA0049613.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15971.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-14
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 77  STSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYSGNKIVVVSNGNKLHISCVGCA 136
           S  FATLETV+  NWY+DSGATNHVT + S L N  +YSG   V   NGN L+I+CVG +
Sbjct: 63  SNPFATLETVIDPNWYIDSGATNHVTAESSGLTNSVDYSGTDKVRAGNGNTLNITCVGHS 122

Query: 137 SLIDEKNCLRLKNILCVPEIKKIL 161
            L D K  L LKNILCV +I K L
Sbjct: 123 YLTDGKRFLALKNILCVSDITKNL 146

BLAST of Cmc05g0127631 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-09
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 56  EHTLNQNGNQNPAIAFVATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYS 115
           +H L+   +Q P   F   Q   + A        NW +DSGAT+H+T D +NL     Y+
Sbjct: 296 QHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYT 355

Query: 116 GNKIVVVSNGNKLHISCVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
           G   V+V++G+ + IS  G  SL  +   L L NIL VP I K L+SV
Sbjct: 356 GGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISV 403

BLAST of Cmc05g0127631 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 0

Query: 52  VHVREHTLNQNGNQNPAIAFVATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNV 111
           +H  + T NQ  + +P   F   Q   + A        NW +DSGAT+H+T D +NL   
Sbjct: 274 LHQFQSTTNQQQSTSP---FTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFH 333

Query: 112 ANYSGNKIVVVSNGNKLHISCVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
             Y+G   V++++G+ + I+  G ASL      L L  +L VP I K L+SV
Sbjct: 334 QPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISV 382

BLAST of Cmc05g0127631 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 89/143 (62.24%), Postives = 98/143 (68.53%), Query Frame = 0

Query: 18  LVLISLVGTDLIKMDSAVGIPSMVGDVVEEEVTNVHVREHTLNQNGNQNPAIAFVATQNS 77
           L+  +LV   LIKM+S   +  M  DVVEEE      R    NQNG Q P  AF+ TQ S
Sbjct: 198 LIFENLVEIVLIKMESETIL--MAADVVEEE-----NRGFNPNQNGKQIPDDAFITTQKS 257

Query: 78  TSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYSGNKIVVVSNGNKLHISCVGCAS 137
           +S AT ETVV  N YVDSGATNHVT DHSNLWN+ +YSGN+ VVV N NKL ISCVG AS
Sbjct: 258 SSLATPETVVDTNRYVDSGATNHVTSDHSNLWNIDDYSGNENVVVGNENKLQISCVGYAS 317

Query: 138 LIDEKNCLRLKNILCVPEIKKIL 161
           L D KNCLRL  ILCVPEIKK L
Sbjct: 318 LTDGKNCLRLDKILCVPEIKKNL 333

BLAST of Cmc05g0127631 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-21
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 56  EHTLNQNGNQNPAIAFVATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYS 115
           EH+ N + + NPA+ FV+TQN+T FAT +TVV  NWY+DSGATNHVT + SN+ N   YS
Sbjct: 293 EHSSNGSVSPNPAV-FVSTQNATPFATPDTVVDPNWYIDSGATNHVTRECSNMTNPTEYS 352

Query: 116 GNKIVVVSNGNKLHISCVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
           G + V V NGN+L+IS VG   L D    L LKNILCVP+I K L+SV
Sbjct: 353 GIEKVTVGNGNRLNISYVGNTCLTDGDKSLVLKNILCVPDIAKNLISV 399

BLAST of Cmc05g0127631 vs. ExPASy TrEMBL
Match: A0A1S4E0Z3 (uncharacterized protein LOC107991455 OS=Cucumis melo OX=3656 GN=LOC107991455 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.1e-19
Identity = 62/111 (55.86%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 55  REHTLNQNGN--QNPAIAFVATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVA 114
           R +  N  GN  QNP  AFV TQN+  FA  E VV  NWYVDSGATN+VT D+ NL N+ 
Sbjct: 32  RGYNTNTLGNSYQNPT-AFVTTQNNNPFAMQEIVVDSNWYVDSGATNYVTLDYLNLSNIT 91

Query: 115 NYSGNKIVVVSNGNKLHISCVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
            YS  +   V NGNKL I CVG   L D  N L+L+N+LCVP I K LVSV
Sbjct: 92  EYSSIEHFSVGNGNKLQIHCVGNFYLSDGNNSLKLENVLCVPNITKNLVSV 141

BLAST of Cmc05g0127631 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.8e-18
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 0

Query: 72  VATQNSTSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYSGNKIVVVSNGNKLHIS 131
           V  Q+   FAT +TV+ +NWY+DSGATNH+T ++SNL N + YSG + ++V NG+ LHIS
Sbjct: 271 VTGQSVNQFATADTVINLNWYIDSGATNHLTVEYSNLSNPSEYSGIEKIMVGNGDSLHIS 330

Query: 132 CVGCASLIDEKNCLRLKNILCVPEIKKILVSV 164
            +G A L D  N L LKN+LCVP+I K LVSV
Sbjct: 331 YIGNAYLTDGINGLNLKNVLCVPDITKNLVSV 362

BLAST of Cmc05g0127631 vs. ExPASy TrEMBL
Match: A0A5A7U192 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00950 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.0e-15
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 77  STSFATLETVVGINWYVDSGATNHVTFDHSNLWNVANYSGNKIVVVSNGNKLHISCVGCA 136
           S  FATLETV+  NWY+DSGATNHVT + S L N  +YSG   V   NGN L+I+CVG +
Sbjct: 63  SNPFATLETVIDPNWYIDSGATNHVTAESSGLTNSVDYSGTDKVRAGNGNTLNITCVGHS 122

Query: 137 SLIDEKNCLRLKNILCVPEIKKIL 161
            L D K  L LKNILCV +I K L
Sbjct: 123 YLTDGKRFLALKNILCVSDITKNL 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0057475.13.8e-3162.24uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK... [more]
XP_016902197.11.8e-2057.41PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
XP_016901889.11.3e-1855.86PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo][more]
TYK05754.11.8e-1755.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0049613.11.4e-1458.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Q94HW23.2e-0937.96Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.8e-0734.82Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5D3E3L71.8e-3162.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E1U68.5e-2157.41uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E0Z36.1e-1955.86uncharacterized protein LOC107991455 OS=Cucumis melo OX=3656 GN=LOC107991455 PE=... [more]
A0A5D3C3738.8e-1855.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7U1927.0e-1558.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0127631.1Cmc05g0127631.1mRNA