Cmc05g0127521 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0127521
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr05: 4936513 .. 4936809 (-)
RNA-Seq Expression	Cmc05g0127521
Synteny	Cmc05g0127521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTAAAATTAAAAGGAATTCAAATGAATCCATTGCTAGATATAAAGCTCGGTTAGTAGCTAAAGGGTTTCATCAAATACCAAATATTGATTACAATGAAACCTTCAGCCCTGTCGTGAAACCAGTCACAATTCGTATGTTATTAACAATTGCTCTTATGAAAGGTTGGATTATTAAACAACTTGATGTTAATAATGCATTTTTACATGGTGTATTAGAAGAAGATGTGTACATGGAACAACTGTACGGTTTTGAAACAAAGACTTCCCATCCTCTTGTTTGTCATCTATGA

mRNA sequence

ATGGTTTTTAAAATTAAAAGGAATTCAAATGAATCCATTGCTAGATATAAAGCTCGGTTAGTAGCTAAAGGGTTTCATCAAATACCAAATATTGATTACAATGAAACCTTCAGCCCTGTCGTGAAACCAGTCACAATTCGTATGTTATTAACAATTGCTCTTATGAAAGGTTGGATTATTAAACAACTTGATGTTAATAATGCATTTTTACATGGTGTATTAGAAGAAGATGTGTACATGGAACAACTGTACGGTTTTGAAACAAAGACTTCCCATCCTCTTGTTTGTCATCTATGA

Coding sequence (CDS)

ATGGTTTTTAAAATTAAAAGGAATTCAAATGAATCCATTGCTAGATATAAAGCTCGGTTAGTAGCTAAAGGGTTTCATCAAATACCAAATATTGATTACAATGAAACCTTCAGCCCTGTCGTGAAACCAGTCACAATTCGTATGTTATTAACAATTGCTCTTATGAAAGGTTGGATTATTAAACAACTTGATGTTAATAATGCATTTTTACATGGTGTATTAGAAGAAGATGTGTACATGGAACAACTGTACGGTTTTGAAACAAAGACTTCCCATCCTCTTGTTTGTCATCTATGA

Protein sequence

MVFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIKQLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL

Homology

[Close]

BLAST of Cmc05g0127521 vs. NCBI nr
Match: KAA0052371.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09417.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 4.7e-37
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VFKIKRNS   IARYKARLVAKGFHQ PNIDYNETFSPVVK +TI MLLTIA+MKGW I+
Sbjct: 31  VFKIKRNSYGPIARYKARLVAKGFHQTPNIDYNETFSPVVKSITICMLLTIAIMKGWSIR 90

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
           QLDVNNAFLHG L+E+VYMEQ++GFE K+S+P+VCHL
Sbjct: 91  QLDVNNAFLHGNLDENVYMEQIFGFEVKSSYPMVCHL 127

[Close]

BLAST of Cmc05g0127521 vs. NCBI nr
Match: TYK18915.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.2e-35
Identity = 77/97 (79.38%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VFKIKRNS  SI+RYKARLVAKGFHQ  NIDYNETFSPVVKP+TIRMLLTI +MKGW I 
Sbjct: 289 VFKIKRNSYGSISRYKARLVAKGFHQTHNIDYNETFSPVVKPITIRMLLTITIMKGWSIH 348

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
           QLDVNNAFLHG L+E+VYMEQ +GFE K+S+P+VC L
Sbjct: 349 QLDVNNAFLHGNLDENVYMEQPFGFEVKSSYPVVCRL 385

[Close]

BLAST of Cmc05g0127521 vs. NCBI nr
Match: PNX78635.1 (hypothetical protein L195_g034613, partial [Trifolium pratense])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VF+IKRN + SIARYKARLVAKGFHQ P ID+ +TFSPV+KP TI+M+L IAL KGWII 
Sbjct: 143 VFRIKRNPDGSIARYKARLVAKGFHQRPGIDFKDTFSPVIKPQTIKMVLCIALSKGWIIS 202

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
           Q+DVNNAFLHG + EDVYM Q  GF  +     VC L
Sbjct: 203 QMDVNNAFLHGTISEDVYMSQPAGFVHQNFPTHVCKL 239

[Close]

BLAST of Cmc05g0127521 vs. NCBI nr
Match: RVW32380.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 3.4e-27
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VFK+K NSN +I +YK RLVAKGFHQ+   D+NETFSPVVKP TIR++LTIAL K W+++
Sbjct: 31  VFKVKENSNGTINKYKVRLVAKGFHQVAGFDFNETFSPVVKPTTIRVVLTIALAKNWVVR 90

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGF-ETKTSHPLVCHL 99
           QLD+NNAFL+G L+E+V+MEQ  GF +TK  H LVC L
Sbjct: 91  QLDINNAFLNGDLQEEVFMEQPSGFVDTKQPH-LVCKL 127

[Close]

BLAST of Cmc05g0127521 vs. NCBI nr
Match: RVW78220.1 (Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 3.4e-27
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 2    VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
            VF+IKRN + SI+RYKARLVAKGFHQ P +DY++TFSPVVKP TIR++L+IAL  GW I 
Sbjct: 930  VFRIKRNPDGSISRYKARLVAKGFHQRPGVDYHDTFSPVVKPTTIRVVLSIALSNGWSIS 989

Query: 62   QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
            QLDVNNAFLHG L EDVYM Q  G+  + +   VC L
Sbjct: 990  QLDVNNAFLHGTLTEDVYMAQPPGYVDQANPTHVCRL 1026

[Close]

BLAST of Cmc05g0127521 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-23
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 2    VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
            +F  K NS+ S+ RYKARLVAKG++Q P +DY ETFSPV+K  +IR++L +A+ + W I+
Sbjct: 1003 IFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIR 1062

Query: 62   QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
            QLDVNNAFL G L +DVYM Q  GF  K     VC L
Sbjct: 1063 QLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKL 1099

[Close]

BLAST of Cmc05g0127521 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.0e-23
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 2    VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
            +F  K NS+ S+ RYKARLVAKG++Q P +DY ETFSPV+K  +IR++L +A+ + W I+
Sbjct: 986  IFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIR 1045

Query: 62   QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
            QLDVNNAFL G L ++VYM Q  GF  K     VC L
Sbjct: 1046 QLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRL 1082

[Close]

BLAST of Cmc05g0127521 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-20
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VFK+K++ +  + RYKARLV KGF Q   ID++E FSPVVK  +IR +L++A      ++
Sbjct: 860 VFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVE 919

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
           QLDV  AFLHG LEE++YMEQ  GFE      +VC L
Sbjct: 920 QLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKL 956

[Close]

BLAST of Cmc05g0127521 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-13
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 2    VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
            VF +K N   +  RYKARLVA+GF Q   IDY ETF+PV +  + R +L++ +     + 
Sbjct: 940  VFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVH 999

Query: 62   QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
            Q+DV  AFL+G L+E++YM    G    + +  VC L
Sbjct: 1000 QMDVKTAFLNGTLKEEIYMRLPQGISCNSDN--VCKL 1034

[Close]

BLAST of Cmc05g0127521 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.2e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIA 54
           VFK K +S+ ++ R KARLVAKGFHQ   I + ET+SPVV+  TIR +L +A
Sbjct: 74  VFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc05g0127521 vs. ExPASy TrEMBL
Match: A0A5A7UFS3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold504G00520 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.3e-37
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VFKIKRNS   IARYKARLVAKGFHQ PNIDYNETFSPVVK +TI MLLTIA+MKGW I+
Sbjct: 31  VFKIKRNSYGPIARYKARLVAKGFHQTPNIDYNETFSPVVKSITICMLLTIAIMKGWSIR 90

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
           QLDVNNAFLHG L+E+VYMEQ++GFE K+S+P+VCHL
Sbjct: 91  QLDVNNAFLHGNLDENVYMEQIFGFEVKSSYPMVCHL 127

[Close]

BLAST of Cmc05g0127521 vs. ExPASy TrEMBL
Match: A0A5D3D5W0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001310 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.6e-36
Identity = 77/97 (79.38%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VFKIKRNS  SI+RYKARLVAKGFHQ  NIDYNETFSPVVKP+TIRMLLTI +MKGW I 
Sbjct: 289 VFKIKRNSYGSISRYKARLVAKGFHQTHNIDYNETFSPVVKPITIRMLLTITIMKGWSIH 348

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
           QLDVNNAFLHG L+E+VYMEQ +GFE K+S+P+VC L
Sbjct: 349 QLDVNNAFLHGNLDENVYMEQPFGFEVKSSYPVVCRL 385

[Close]

BLAST of Cmc05g0127521 vs. ExPASy TrEMBL
Match: A0A2K3LJB9 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g034613 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.4e-28
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VF+IKRN + SIARYKARLVAKGFHQ P ID+ +TFSPV+KP TI+M+L IAL KGWII 
Sbjct: 143 VFRIKRNPDGSIARYKARLVAKGFHQRPGIDFKDTFSPVIKPQTIKMVLCIALSKGWIIS 202

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
           Q+DVNNAFLHG + EDVYM Q  GF  +     VC L
Sbjct: 203 QMDVNNAFLHGTISEDVYMSQPAGFVHQNFPTHVCKL 239

[Close]

BLAST of Cmc05g0127521 vs. ExPASy TrEMBL
Match: A0A438H0V6 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=29760 GN=RE2_103 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 2    VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
            VF+IKRN + SI+RYKARLVAKGFHQ P +DY++TFSPVVKP TIR++L+IAL  GW I 
Sbjct: 930  VFRIKRNPDGSISRYKARLVAKGFHQRPGVDYHDTFSPVVKPTTIRVVLSIALSNGWSIS 989

Query: 62   QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPLVCHL 99
            QLDVNNAFLHG L EDVYM Q  G+  + +   VC L
Sbjct: 990  QLDVNNAFLHGTLTEDVYMAQPPGYVDQANPTHVCRL 1026

[Close]

BLAST of Cmc05g0127521 vs. ExPASy TrEMBL
Match: A0A438DAA3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_262 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           VFK+K NSN +I +YK RLVAKGFHQ+   D+NETFSPVVKP TIR++LTIAL K W+++
Sbjct: 31  VFKVKENSNGTINKYKVRLVAKGFHQVAGFDFNETFSPVVKPTTIRVVLTIALAKNWVVR 90

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGF-ETKTSHPLVCHL 99
           QLD+NNAFL+G L+E+V+MEQ  GF +TK  H LVC L
Sbjct: 91  QLDINNAFLNGDLQEEVFMEQPSGFVDTKQPH-LVCKL 127

[Close]

BLAST of Cmc05g0127521 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-19
Identity = 46/101 (45.54%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIALMKGWIIK 61
           V+KIK NS+ +I RYKARLVAKG+ Q   ID+ ETFSPV K  +++++L I+ +  + + 
Sbjct: 132 VYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191

Query: 62  QLDVNNAFLHGVLEEDVYMEQLYGFETKTSHPL----VCHL 99
           QLD++NAFL+G L+E++YM+   G+  +    L    VC+L
Sbjct: 192 QLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

[Close]

BLAST of Cmc05g0127521 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-09
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 2   VFKIKRNSNESIARYKARLVAKGFHQIPNIDYNETFSPVVKPVTIRMLLTIA 54
           VFK K +S+ ++ R KARLVAKGFHQ   I + ET+SPVV+  TIR +L +A
Sbjct: 74  VFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc05g0127521 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052371.1	4.7e-37	80.41	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09417.1 putative m...	[more]
TYK18915.1	1.2e-35	79.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
PNX78635.1	1.5e-27	67.01	hypothetical protein L195_g034613, partial [Trifolium pratense]	[more]
RVW32380.1	3.4e-27	65.31	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW78220.1	3.4e-27	65.98	Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]	[more]

BLAST of Cmc05g0127521 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	5.3e-23	55.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.0e-23	54.64	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.4e-20	51.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.7e-13	41.24	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	8.2e-08	55.77	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0127521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFS3	2.3e-37	80.41	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3D5W0	5.6e-36	79.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2K3LJB9	7.4e-28	67.01	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Tri...	[more]
A0A438H0V6	1.6e-27	65.98	Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=2976...	[more]
A0A438DAA3	1.6e-27	65.31	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of Cmc05g0127521 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.1e-19	45.54	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	5.8e-09	55.77	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..97 e-value: 5.7E-28 score: 98.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..90
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 4..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0127521.1	Cmc05g0127521.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding