Cmc05g0127251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0127251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr05: 4550541 .. 4551056 (+)
RNA-Seq Expression	Cmc05g0127251
Synteny	Cmc05g0127251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGCCGTTCGTACTGACAAACGCCCCTTCAACCTTTCAAGCCTTGATGAACCAGGTATTTAAGCCCTTTTTGAGAAGATTTGTACTTGTTTTCTTTGACGATATTTTGGTCTATAGTAAGGGAATAGAGGAGCATGTACAACACCTTGAAGTGGTGTTGGAAATTTTGAGGGAAAGTGAATTGTATGCCAACTTCGATAAGTGCAATTTCACTAAACCAAGAATCAGTTACTTGGGGCATTATATCTCTGTGAAAGGCATTGAGGTGGATCCCGAAAAAATACGAGCAGTGAAAGAATGGCCAACACTTTCAAACGTGAGGGAAATGAGGGGATTTTTGGGGCTCACGGGTTATTACCGCCGCTTTGTGCAGAACTACGGGAGTATAGCAACCCCCCTCACGCAGTTATTGAAAGCAAGGGCATACAAATGGACAGAAGAAACAGAGGCAGCCTTTGAGAAACTCAAAAAGGCCATGATGACCCTTCCCGTGCTAGTGATGACCCTTTGA

mRNA sequence

ATGGTGATGCCGTTCGTACTGACAAACGCCCCTTCAACCTTTCAAGCCTTGATGAACCAGGTATTTAAGCCCTTTTTGAGAAGATTTGTACTTGTTTTCTTTGACGATATTTTGGTCTATAGTAAGGGAATAGAGGAGCATGTACAACACCTTGAAGTGGTGTTGGAAATTTTGAGGGAAAGTGAATTGTATGCCAACTTCGATAAGTGCAATTTCACTAAACCAAGAATCAGTTACTTGGGGCATTATATCTCTGTGAAAGGCATTGAGGTGGATCCCGAAAAAATACGAGCAGTGAAAGAATGGCCAACACTTTCAAACGTGAGGGAAATGAGGGGATTTTTGGGGCTCACGGGTTATTACCGCCGCTTTGTGCAGAACTACGGGAGTATAGCAACCCCCCTCACGCAGTTATTGAAAGCAAGGGCATACAAATGGACAGAAGAAACAGAGGCAGCCTTTGAGAAACTCAAAAAGGCCATGATGACCCTTCCCGTGCTAGTGATGACCCTTTGA

Coding sequence (CDS)

ATGGTGATGCCGTTCGTACTGACAAACGCCCCTTCAACCTTTCAAGCCTTGATGAACCAGGTATTTAAGCCCTTTTTGAGAAGATTTGTACTTGTTTTCTTTGACGATATTTTGGTCTATAGTAAGGGAATAGAGGAGCATGTACAACACCTTGAAGTGGTGTTGGAAATTTTGAGGGAAAGTGAATTGTATGCCAACTTCGATAAGTGCAATTTCACTAAACCAAGAATCAGTTACTTGGGGCATTATATCTCTGTGAAAGGCATTGAGGTGGATCCCGAAAAAATACGAGCAGTGAAAGAATGGCCAACACTTTCAAACGTGAGGGAAATGAGGGGATTTTTGGGGCTCACGGGTTATTACCGCCGCTTTGTGCAGAACTACGGGAGTATAGCAACCCCCCTCACGCAGTTATTGAAAGCAAGGGCATACAAATGGACAGAAGAAACAGAGGCAGCCTTTGAGAAACTCAAAAAGGCCATGATGACCCTTCCCGTGCTAGTGATGACCCTTTGA

Protein sequence

MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRESELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGYYRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVMTL

Homology

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BLAST of Cmc05g0127251 vs. NCBI nr
Match: KAA0055925.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 157/169 (92.90%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKG+EEHVQHLEVVL ILRE
Sbjct: 382 MVMPFRLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGMEEHVQHLEVVLGILRE 441

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F KPRISYLGHYISVKGIEVDPEKIRAVKEWPT SN+REMRGFLGLTGY
Sbjct: 442 SELYANFDKCHFAKPRISYLGHYISVKGIEVDPEKIRAVKEWPTPSNLREMRGFLGLTGY 501

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSIA PLT+LLKA AYKWTEETEA FEKLKKAMMTLPVL M
Sbjct: 502 YRRFVQNYGSIAAPLTRLLKAGAYKWTEETEATFEKLKKAMMTLPVLAM 550

[Close]

BLAST of Cmc05g0127251 vs. NCBI nr
Match: KAA0063300.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 308.1 bits (788), Expect = 4.6e-80
Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKG+EEH QHLEVVLEILRE
Sbjct: 604 MVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGMEEHRQHLEVVLEILRE 663

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F K RISYLGHYIS+KGIEVDPEKIRAVKEWP  SNVREMRGFLGLTGY
Sbjct: 664 SELYANFDKCHFAKTRISYLGHYISMKGIEVDPEKIRAVKEWPAPSNVREMRGFLGLTGY 723

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSI+ PL QLLKA AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 724 YRRFVQNYGSISAPLIQLLKAGAYKWTEETEAAFEKLKKAMMTLPVLAM 772

[Close]

BLAST of Cmc05g0127251 vs. NCBI nr
Match: KAA0066118.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDIL+YSKG+EEH QHLEVVLEILRE
Sbjct: 382 MVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRE 441

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F K RISYLGHYIS KGIEVDPEKIRAVKEWP  SNVRE+RGFLGLTGY
Sbjct: 442 SELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTGY 501

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSI+ PLTQLLK+ AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 502 YRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAM 550

[Close]

BLAST of Cmc05g0127251 vs. NCBI nr
Match: TYK15157.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDIL+YSKG+EEH QHLEVVLEILRE
Sbjct: 293 MVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRE 352

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F K RISYLGHYIS KGIEVDPEKIRAVKEWP  SNVRE+RGFLGLTGY
Sbjct: 353 SELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTGY 412

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSI+ PLTQLLK+ AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 413 YRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAM 461

[Close]

BLAST of Cmc05g0127251 vs. NCBI nr
Match: KAA0039715.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 153/169 (90.53%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTN PSTFQALMNQVFKPFLRRFVLVFFDDILVYSKG+EEH QHLEVV  ILRE
Sbjct: 156 MVMPFGLTNVPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGMEEHAQHLEVVSGILRE 215

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F +PRISYLGHYISVKGIEVDPEKIRAV+EWP  SNVREMRGFLGLTGY
Sbjct: 216 SELYANFDKCHFAQPRISYLGHYISVKGIEVDPEKIRAVREWPAPSNVREMRGFLGLTGY 275

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSIA PLTQLLK  AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 276 YRRFVQNYGSIAAPLTQLLKVGAYKWTEETEAAFEKLKKAMMTLPVLAM 324

[Close]

BLAST of Cmc05g0127251 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-34
Identity = 71/167 (42.51%), Postives = 109/167 (65.27%), Query Frame = 0


Query: 3   MPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRESE 62
           MPF L NAP+TFQ  MN + +P L +  LV+ DDI+V+S  ++EH+Q L +V E L ++ 
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 63  LYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGYYR 122
           L    DKC F K   ++LGH ++  GI+ +PEKI A++++P  +  +E++ FLGLTGYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 123 RFVQNYGSIATPLTQLLK--ARAYKWTEETEAAFEKLKKAMMTLPVL 168
           +F+ N+  IA P+T+ LK   +      E ++AF+KLK  +   P+L
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPIL 500

[Close]

BLAST of Cmc05g0127251 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.8e-34
Identity = 70/167 (41.92%), Postives = 106/167 (63.47%), Query Frame = 0


Query: 3   MPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRESE 62
           MPF L NAP+TFQ  MN + +P L +  LV+ DDI+++S  + EH+  +++V   L ++ 
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 63  LYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGYYR 122
           L    DKC F K   ++LGH ++  GI+ +P K++A+  +P  +  +E+R FLGLTGYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 123 RFVQNYGSIATPLTQLLKARAYKWTEETE--AAFEKLKKAMMTLPVL 168
           +F+ NY  IA P+T  LK R    T++ E   AFEKLK  ++  P+L
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPIL 499

[Close]

BLAST of Cmc05g0127251 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.0e-31
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 48  VQHLEVVLEILRESELYANFDKCNFTKPRISYLG--HYISVKGIEVDPEKIRAVKEWPTL 107
           + HL +VL+I  + + YAN  KC F +P+I+YLG  H IS +G+  DP K+ A+  WP  
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 108 SNVREMRGFLGLTGYYRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLP 167
            N  E+RGFLGLTGYYRRFV+NYG I  PLT+LLK  + KWTE    AF+ LK A+ TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 168 VLVM 170
           VL +
Sbjct: 121 VLAL 124

[Close]

BLAST of Cmc05g0127251 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-29
Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 2   VMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRES 61
           VMPF L NAPSTF   M   F+    RFV V+ DDIL++S+  EEH +HL+ VLE L+  
Sbjct: 743 VMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNE 802

Query: 62  ELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGYY 121
            L     KC F      +LG+ I ++ I     K  A++++PT   V++ + FLG+  YY
Sbjct: 803 NLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYY 862

Query: 122 RRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLV 169
           RRF+ N   IA P+ QL      +WTE+ + A EKLK A+   PVLV
Sbjct: 863 RRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIEKLKAALCNSPVLV 906

[Close]

BLAST of Cmc05g0127251 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 2   VMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRES 61
           VMPF L NAPSTF   M   F+    RFV V+ DDIL++S+  EEH +HL+ VLE L+  
Sbjct: 717 VMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNE 776

Query: 62  ELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGYY 121
            L     KC F      +LG+ I ++ I     K  A++++PT   V++ + FLG+  YY
Sbjct: 777 NLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYY 836

Query: 122 RRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLV 169
           RRF+ N   IA P+ QL      +WTE+ + A +KLK A+   PVLV
Sbjct: 837 RRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIDKLKDALCNSPVLV 880

[Close]

BLAST of Cmc05g0127251 vs. ExPASy TrEMBL
Match: A0A5A7UQM9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00440 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.3e-82
Identity = 157/169 (92.90%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKG+EEHVQHLEVVL ILRE
Sbjct: 382 MVMPFRLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGMEEHVQHLEVVLGILRE 441

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F KPRISYLGHYISVKGIEVDPEKIRAVKEWPT SN+REMRGFLGLTGY
Sbjct: 442 SELYANFDKCHFAKPRISYLGHYISVKGIEVDPEKIRAVKEWPTPSNLREMRGFLGLTGY 501

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSIA PLT+LLKA AYKWTEETEA FEKLKKAMMTLPVL M
Sbjct: 502 YRRFVQNYGSIAAPLTRLLKAGAYKWTEETEATFEKLKKAMMTLPVLAM 550

[Close]

BLAST of Cmc05g0127251 vs. ExPASy TrEMBL
Match: A0A5A7V7S9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001230 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKG+EEH QHLEVVLEILRE
Sbjct: 604 MVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGMEEHRQHLEVVLEILRE 663

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F K RISYLGHYIS+KGIEVDPEKIRAVKEWP  SNVREMRGFLGLTGY
Sbjct: 664 SELYANFDKCHFAKTRISYLGHYISMKGIEVDPEKIRAVKEWPAPSNVREMRGFLGLTGY 723

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSI+ PL QLLKA AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 724 YRRFVQNYGSISAPLIQLLKAGAYKWTEETEAAFEKLKKAMMTLPVLAM 772

[Close]

BLAST of Cmc05g0127251 vs. ExPASy TrEMBL
Match: A0A5D3CTA1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00220 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDIL+YSKG+EEH QHLEVVLEILRE
Sbjct: 293 MVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRE 352

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F K RISYLGHYIS KGIEVDPEKIRAVKEWP  SNVRE+RGFLGLTGY
Sbjct: 353 SELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTGY 412

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSI+ PLTQLLK+ AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 413 YRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAM 461

[Close]

BLAST of Cmc05g0127251 vs. ExPASy TrEMBL
Match: A0A5A7VEI2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001140 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTNAPSTFQALMNQVFKPFLRRFVLVFFDDIL+YSKG+EEH QHLEVVLEILRE
Sbjct: 382 MVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRE 441

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F K RISYLGHYIS KGIEVDPEKIRAVKEWP  SNVRE+RGFLGLTGY
Sbjct: 442 SELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTGY 501

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSI+ PLTQLLK+ AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 502 YRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMTLPVLAM 550

[Close]

BLAST of Cmc05g0127251 vs. ExPASy TrEMBL
Match: A0A5A7TE42 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00470 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.5e-80
Identity = 153/169 (90.53%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MVMPFVLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGIEEHVQHLEVVLEILRE 60
           MVMPF LTN PSTFQALMNQVFKPFLRRFVLVFFDDILVYSKG+EEH QHLEVV  ILRE
Sbjct: 156 MVMPFGLTNVPSTFQALMNQVFKPFLRRFVLVFFDDILVYSKGMEEHAQHLEVVSGILRE 215

Query: 61  SELYANFDKCNFTKPRISYLGHYISVKGIEVDPEKIRAVKEWPTLSNVREMRGFLGLTGY 120
           SELYANFDKC+F +PRISYLGHYISVKGIEVDPEKIRAV+EWP  SNVREMRGFLGLTGY
Sbjct: 216 SELYANFDKCHFAQPRISYLGHYISVKGIEVDPEKIRAVREWPAPSNVREMRGFLGLTGY 275

Query: 121 YRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLPVLVM 170
           YRRFVQNYGSIA PLTQLLK  AYKWTEETEAAFEKLKKAMMTLPVL M
Sbjct: 276 YRRFVQNYGSIAAPLTQLLKVGAYKWTEETEAAFEKLKKAMMTLPVLAM 324

[Close]

BLAST of Cmc05g0127251 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 5.0e-32
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 48  VQHLEVVLEILRESELYANFDKCNFTKPRISYLG--HYISVKGIEVDPEKIRAVKEWPTL 107
           + HL +VL+I  + + YAN  KC F +P+I+YLG  H IS +G+  DP K+ A+  WP  
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 108 SNVREMRGFLGLTGYYRRFVQNYGSIATPLTQLLKARAYKWTEETEAAFEKLKKAMMTLP 167
            N  E+RGFLGLTGYYRRFV+NYG I  PLT+LLK  + KWTE    AF+ LK A+ TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 168 VLVM 170
           VL +
Sbjct: 121 VLAL 124

The following BLAST results are available for this feature:

BLAST of Cmc05g0127251 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055925.1	1.1e-81	92.90	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063300.1	4.6e-80	91.72	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066118.1	1.3e-79	90.53	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15157.1	1.3e-79	90.53	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0039715.1	1.8e-79	90.53	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0127251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	4.0e-34	42.51	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	8.8e-34	41.92	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P92523	7.0e-31	53.23	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q7LHG5	5.0e-29	42.51	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.1e-28	41.92	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc05g0127251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQM9	5.3e-82	92.90	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V7S9	2.2e-80	91.72	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CTA1	6.5e-80	90.53	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VEI2	6.5e-80	90.53	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TE42	8.5e-80	90.53	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Cmc05g0127251 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.0e-32	53.23	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..83 e-value: 4.6E-17 score: 62.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..84 score: 11.089509
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 93..171 e-value: 2.8E-27 score: 96.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..89 e-value: 1.2E-33 score: 117.8
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..162
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..162
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..84 e-value: 6.31293E-39 score: 128.867
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0127251.1	Cmc05g0127251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005768	endosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity