Cmc05g0126611 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0126611
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr05: 3838694 .. 3839365 (-)
RNA-Seq Expression	Cmc05g0126611
Synteny	Cmc05g0126611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTCTTTAGCAAGATGTAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGTTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACAGTCACTTCATTGAATCATGCAGAAATTCTTGCGATTCATGAAGCTAGTAGAAAATGTGCATGGTTAAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAACACAAATCAAAGGAGAGTATATAAAAGGAGATAGAACAAAGCATATCTCACTAAAACTCTTCTATACGCATGACCTTAAAGAAAATGGTGACATCGGTGTTCAACAAATTTTTTCAAAAGACAACTTGGCGGACTTATTAACAAAAACATTACCCACATCAATATTTGAAAAGTTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

mRNA sequence

ATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTCTTTAGCAAGATGTAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGTTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACAGTCACTTCATTGAATCATGCAGAAATTCTTGCGATTCATGAAGCTAGTAGAAAATGTGCATGGTTAAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAACACAAATCAAAGGAGAGTATATAAAAGGAGATAGAACAAAGCATATCTCACTAAAACTCTTCTATACGCATGACCTTAAAGAAAATGGTGACATCGGTGTTCAACAAATTTTTTCAAAAGACAACTTGGCGGACTTATTAACAAAAACATTACCCACATCAATATTTGAAAAGTTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Coding sequence (CDS)

ATGTATCTTGCTAATAACACAAGACCAGATATAACATTTTCAGTAAATTCTTTAGCAAGATGTAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGAGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGTTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGGTCTGTAAAGCAAACCATGACAGTCACTTCATTGAATCATGCAGAAATTCTTGCGATTCATGAAGCTAGTAGAAAATGTGCATGGTTAAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAACACAAATCAAAGGAGAGTATATAAAAGGAGATAGAACAAAGCATATCTCACTAAAACTCTTCTATACGCATGACCTTAAAGAAAATGGTGACATCGGTGTTCAACAAATTTTTTCAAAAGACAACTTGGCGGACTTATTAACAAAAACATTACCCACATCAATATTTGAAAAGTTAGTGCACAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Protein sequence

MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWLRSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKENGDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLRELK

Homology

[Close]

BLAST of Cmc05g0126611 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.5e-110
Identity = 199/223 (89.24%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYLANNTRPDI FSVN LAR S SPTKRHWNGVKHVLRYLRGTIDM LFYSNKSNFDLVG
Sbjct: 37  MYLANNTRPDIAFSVNLLARYSYSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVG 96

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD G+LSDPHKARSQTGYLFTC GTAISWRSVKQTMT TS NHAEILAIHEASR+C WL
Sbjct: 97  YADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 156

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RSMTH+IRETCGLSFSKNLPTILFEDNTACITQIKG YIKGDRTKHIS KLFYTHDL+EN
Sbjct: 157 RSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTKHISPKLFYTHDLEEN 216

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLRELK 224
           GDI VQQI SKDNL DL TK L TS FEKLVHNIGMR+LRELK
Sbjct: 217 GDISVQQISSKDNLVDLFTKALLTSTFEKLVHNIGMRQLRELK 259

[Close]

BLAST of Cmc05g0126611 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 399.4 bits (1025), Expect = 2.0e-107
Identity = 196/223 (87.89%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           M LANNTRPDI FSVN LAR SSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG
Sbjct: 47  MCLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 106

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD GYLSDP KARSQ GYLFT GGTAISWRSVKQTMT TS NHAEILAIHE SR+C WL
Sbjct: 107 YADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWL 166

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RSMTHHIRETCGLSFSKNLPTILFEDNTACI QIKG YIKGDRTKH+S KLFYTH+L+EN
Sbjct: 167 RSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEEN 226

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLRELK 224
           GDI VQQI SKDNL DL TK LPT  FEKLVHNIGM RLRELK
Sbjct: 227 GDISVQQISSKDNLVDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc05g0126611 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 169/222 (76.13%), Postives = 187/222 (84.23%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
            MYLAN TRPDI FSVN LAR SS+PT+RHW G+KH+ RYLRGTID+ LFYSN S   L+G
Sbjct: 986  MYLANCTRPDIAFSVNLLARYSSAPTQRHWKGIKHIFRYLRGTIDLGLFYSNGSASQLIG 1045

Query: 61   YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
            YAD GYLSDPHKARSQTGY+FTCGG AISWRSVKQT+T TS NH+EI+AIHE SR+C WL
Sbjct: 1046 YADAGYLSDPHKARSQTGYVFTCGGAAISWRSVKQTLTATSSNHSEIIAIHETSRECVWL 1105

Query: 121  RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
            RSM  HIRE CGLS  K+ PTIL+EDN ACITQIKG YIKGDRTKHIS K FYTHDL++N
Sbjct: 1106 RSMIQHIREKCGLSSIKDCPTILYEDNAACITQIKGGYIKGDRTKHISPKFFYTHDLQKN 1165

Query: 181  GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLREL 223
            GDI VQQI S DNLADL TK LPT+ F+KLV NIGMRRL+ L
Sbjct: 1166 GDIDVQQIRSSDNLADLFTKALPTTTFKKLVANIGMRRLKNL 1207

[Close]

BLAST of Cmc05g0126611 vs. NCBI nr
Match: ERM98543.1 (hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 168/222 (75.68%), Postives = 187/222 (84.23%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYLAN TRPDI FSVN LAR SS+PT RHW G+KH+LRYL+GTID  LFYSN     L+G
Sbjct: 59  MYLANCTRPDIAFSVNLLARFSSAPTYRHWKGIKHILRYLQGTIDKGLFYSNNCGSQLIG 118

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD GYLSDPHKARSQTGYLFTCG TAISWRS KQT+  TS NHAEILAIHEASR+C WL
Sbjct: 119 YADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAEILAIHEASRECVWL 178

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RSMT HIR TCGL+ +K +PTIL+EDN ACI Q+KG YIKGDRTKHIS K F+TH+L+EN
Sbjct: 179 RSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHNLQEN 238

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLREL 223
           GDI VQQI S DNLADL TK+LPTS FEK+VH IGMRRL++L
Sbjct: 239 GDIDVQQIRSSDNLADLFTKSLPTSTFEKMVHKIGMRRLKDL 280

[Close]

BLAST of Cmc05g0126611 vs. NCBI nr
Match: WP_168415592.1 (Ty1/Copia family ribonuclease HI [Acinetobacter indicus])

HSP 1 Score: 347.8 bits (891), Expect = 6.8e-92
Identity = 161/223 (72.20%), Postives = 187/223 (83.86%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYL+++TRPDITF+VN LAR SSSPT RHWNG+KH+ RYLRGT+DM L+YS     +L+G
Sbjct: 85  MYLSSHTRPDITFAVNLLARYSSSPTIRHWNGIKHIFRYLRGTMDMGLYYSYAPEAELIG 144

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD GYLSDPH  RSQTGY+FTCGGTAISWRS+KQT++ TS NH+EI+AIHEASR+C WL
Sbjct: 145 YADAGYLSDPHNGRSQTGYVFTCGGTAISWRSMKQTISATSSNHSEIIAIHEASRECVWL 204

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RS+ HHIRE  GL+  KN+PT L+EDN ACI Q+KG YIKGDRTKHIS K F+THDL++ 
Sbjct: 205 RSVIHHIREASGLTLKKNVPTTLYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQKR 264

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLRELK 224
           GDI VQQI S DNLADL TK LPTS FEKLVH IGMR+LR LK
Sbjct: 265 GDIDVQQIRSSDNLADLFTKALPTSTFEKLVHKIGMRKLRNLK 307

[Close]

BLAST of Cmc05g0126611 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 73/219 (33.33%), Postives = 111/219 (50.68%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFD--L 60
            MY+   TRPD+T +VN L+R SS      W  +K VLRYL+GTIDM L +     F+  +
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   VGYADVGYLSDPHKARSQTGYLFTC-GGTAISWRSVKQTMTVTSLNHAEILAIHEASRKC 120
            +GY D  +       +S TGYLF       I W + +Q     S   AE +A+ EA R+ 
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  AWLRSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDL 180
             WL+ +         ++     P  ++EDN  CI+ I        R KHI +K  +  + 
Sbjct: 1309 LWLKFL------LTSINIKLENPIKIYEDNQGCIS-IANNPSCHKRAKHIDIKYHFAREQ 1368

Query: 181  KENGDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGM 217
             +N  I ++ I +++ LAD+ TK LP + F +L   +G+
Sbjct: 1369 VQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc05g0126611 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 73/216 (33.80%), Postives = 108/216 (50.00%), Query Frame = 0


Query: 1    MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
            MY    TRPDI  +V  ++R   +P K HW  VK +LRYLRGT    L +   S+  L G
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKG 1178

Query: 61   YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
            Y D     D    +S TGYLFT  G AISW+S  Q     S   AE +A  E  ++  WL
Sbjct: 1179 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWL 1238

Query: 121  RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
            +     +    GL   +    +++ D+ + I   K       RTKHI ++  +  ++ ++
Sbjct: 1239 KRFLQEL----GLHQKE---YVVYCDSQSAIDLSKNSMYHA-RTKHIDVRYHWIREMVDD 1298

Query: 181  GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGM 217
              + V +I + +N AD+LTK +P + FE     +GM
Sbjct: 1299 ESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc05g0126611 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-24
Identity = 67/210 (31.90%), Postives = 101/210 (48.10%), Query Frame = 0


Query: 7    TRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGY 66
            TRPD++++VN L++    PT  HWN +K VLRYL GT D  +F    +   L  Y+D  +
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1300

Query: 67   LSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWLRSMTHH 126
              D     S  GY+   G   ISW S KQ   V S   AE  ++   S +  W+ S+   
Sbjct: 1301 AGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTE 1360

Query: 127  IRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKENGDIGVQ 186
            +    G+  S   P +++ DN    T +    +   R KHI+L   +  +  ++G + V 
Sbjct: 1361 L----GIQLSH--PPVIYCDNVGA-TYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVV 1420

Query: 187  QIFSKDNLADLLTKTLPTSIFEKLVHNIGM 217
             + + D LAD LTK L    F+     IG+
Sbjct: 1421 HVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc05g0126611 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.7e-19
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYL   TRPD+  +V  L++ +S P   HW  +K VLRYL+ T    L ++      LVG
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVG 73

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           Y+D  +  D    RS +GYLF   G  +SWRS KQ     S    E +A+ EA+++  WL
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

Query: 121 RSMTHHIR 129
              T   +
Sbjct: 134 TVRTRRTK 141

[Close]

BLAST of Cmc05g0126611 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-13
Identity = 58/215 (26.98%), Postives = 102/215 (47.44%), Query Frame = 0


Query: 2    YLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFY----SNKSNFD 61
            Y+    R D+ + +N+LA+    P+++  +    +++++  T D  L +      K +  
Sbjct: 1560 YVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNK 1619

Query: 62   LVGYADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKC 121
            LV  +D  Y + P+  +SQ G +F   G  I  +S K ++T TS   AEI A+ EA    
Sbjct: 1620 LVAISDASYGNQPY-YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEA---I 1679

Query: 122  AWLRSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDL 181
              L +++H ++E       K L T    D+ + I+ IK    +  R +    K     D 
Sbjct: 1680 PLLNNLSHLVQELNKKPIIKGLLT----DSRSTISIIKSTNEEKFRNRFFGTKAMRLRDE 1739

Query: 182  KENGDIGVQQIFSKDNLADLLTKTLPTSIFEKLVH 213
                ++ V  I +K N+AD++TK LP   F+ L +
Sbjct: 1740 VSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTN 1766

[Close]

BLAST of Cmc05g0126611 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.6e-110
Identity = 199/223 (89.24%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYLANNTRPDI FSVN LAR S SPTKRHWNGVKHVLRYLRGTIDM LFYSNKSNFDLVG
Sbjct: 37  MYLANNTRPDIAFSVNLLARYSYSPTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVG 96

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD G+LSDPHKARSQTGYLFTC GTAISWRSVKQTMT TS NHAEILAIHEASR+C WL
Sbjct: 97  YADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWL 156

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RSMTH+IRETCGLSFSKNLPTILFEDNTACITQIKG YIKGDRTKHIS KLFYTHDL+EN
Sbjct: 157 RSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTKHISPKLFYTHDLEEN 216

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLRELK 224
           GDI VQQI SKDNL DL TK L TS FEKLVHNIGMR+LRELK
Sbjct: 217 GDISVQQISSKDNLVDLFTKALLTSTFEKLVHNIGMRQLRELK 259

[Close]

BLAST of Cmc05g0126611 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.6e-108
Identity = 196/223 (87.89%), Postives = 200/223 (89.69%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           M LANNTRPDI FSVN LAR SSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG
Sbjct: 47  MCLANNTRPDIAFSVNLLARYSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 106

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD GYLSDP KARSQ GYLFT GGTAISWRSVKQTMT TS NHAEILAIHE SR+C WL
Sbjct: 107 YADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWL 166

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RSMTHHIRETCGLSFSKNLPTILFEDNTACI QIKG YIKGDRTKH+S KLFYTH+L+EN
Sbjct: 167 RSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEEN 226

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLRELK 224
           GDI VQQI SKDNL DL TK LPT  FEKLVHNIGM RLRELK
Sbjct: 227 GDISVQQISSKDNLVDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc05g0126611 vs. ExPASy TrEMBL
Match: U5CXL6 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s04311p00004950 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 168/222 (75.68%), Postives = 187/222 (84.23%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYLAN TRPDI FSVN LAR SS+PT RHW G+KH+LRYL+GTID  LFYSN     L+G
Sbjct: 59  MYLANCTRPDIAFSVNLLARFSSAPTYRHWKGIKHILRYLQGTIDKGLFYSNNCGSQLIG 118

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD GYLSDPHKARSQTGYLFTCG TAISWRS KQT+  TS NHAEILAIHEASR+C WL
Sbjct: 119 YADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAEILAIHEASRECVWL 178

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RSMT HIR TCGL+ +K +PTIL+EDN ACI Q+KG YIKGDRTKHIS K F+TH+L+EN
Sbjct: 179 RSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHNLQEN 238

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLREL 223
           GDI VQQI S DNLADL TK+LPTS FEK+VH IGMRRL++L
Sbjct: 239 GDIDVQQIRSSDNLADLFTKSLPTSTFEKMVHKIGMRRLKDL 280

[Close]

BLAST of Cmc05g0126611 vs. ExPASy TrEMBL
Match: A0A2N9IR78 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54505 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.8e-93
Identity = 167/222 (75.23%), Postives = 191/222 (86.04%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYLAN TRPDI FSVN LAR SS+PT RHWNGVKHVLRYLRGT DM LFY NKSN  LVG
Sbjct: 378 MYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVG 437

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD GYLSDPHK RSQTGYLFTCG TAISWRSVKQT++ TS NH+EI+AIHEASR+C WL
Sbjct: 438 YADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQTISATSSNHSEIIAIHEASRECVWL 497

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RS+  HIRE CGLS  K+ PTIL+EDN ACITQI+G YIKGDRTKHIS K FYTH+L+++
Sbjct: 498 RSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRGGYIKGDRTKHISPKFFYTHELQKS 557

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLREL 223
           GDI V+QI S +NLAD+ TK+LPT+ F+K+VH+IGMRRL++L
Sbjct: 558 GDIDVKQIRSSENLADIFTKSLPTTTFKKIVHSIGMRRLKDL 599

[Close]

BLAST of Cmc05g0126611 vs. ExPASy TrEMBL
Match: A0A2N9HZE8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45337 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.0e-93
Identity = 167/222 (75.23%), Postives = 190/222 (85.59%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYLAN TRPDI FSVN LAR SS+PT RHWNGVKHVLRYLRGT DM LFY NKSN  LVG
Sbjct: 566 MYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHVLRYLRGTTDMRLFYPNKSNPQLVG 625

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           YAD GYLSDPHK RSQTGYLFTCG TAISWRSVKQT++ TS NH+EI+AIHEASR+C WL
Sbjct: 626 YADAGYLSDPHKGRSQTGYLFTCGDTAISWRSVKQTISATSSNHSEIIAIHEASRECVWL 685

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHISLKLFYTHDLKEN 180
           RS+  HIRE CGLS  K+ PTIL+EDN ACITQI+G YIKGDR KHIS K FYTH+L+++
Sbjct: 686 RSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRGGYIKGDRIKHISPKFFYTHELQKS 745

Query: 181 GDIGVQQIFSKDNLADLLTKTLPTSIFEKLVHNIGMRRLREL 223
           GDI V+QI S +NLAD+ TK+LPT+ F+K+VHNIGMRRL++L
Sbjct: 746 GDINVKQIRSSENLADIFTKSLPTTTFKKIVHNIGMRRLKDL 787

[Close]

BLAST of Cmc05g0126611 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 98.2 bits (243), Expect = 8.8e-21
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 1   MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
           MYL   TR DI+F+VN L++ S +P   H   V  +L Y++GT+   LFYS+++   L  
Sbjct: 386 MYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 445

Query: 61  YADVGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAWL 120
           ++D  + S     RS  GY    G + ISW+S KQ +   S   AE  A+  A+ +  WL
Sbjct: 446 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 505

Query: 121 RSMTHHIRETCGLSFSKNLPTILFEDNTACITQIKGEYIKGDRTKHI 168
                 ++    L  SK  PT+LF DNTA I  I    +  +RTKHI
Sbjct: 506 AQFFRELQ----LPLSK--PTLLFCDNTAAI-HIATNAVFHERTKHI 544

[Close]

BLAST of Cmc05g0126611 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-10
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MYLANNTRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVG 60
          MYL   TRPD+TF+VN L++ SS+        V  VL Y++GT+   LFYS  S+  L  
Sbjct: 1  MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 61 YADVGYLSDPHKARSQTGY 80
          +AD  + S P   RS TG+
Sbjct: 61 FADSDWASCPDTRRSVTGF 78

[Close]

BLAST of Cmc05g0126611 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09
Identity = 33/113 (29.20%), Postives = 54/113 (47.79%), Query Frame = 0


Query: 7   TRPDITFSVNSLARCSSSPTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADVGY 66
           TRPDI+++VN + +    PT   ++ +K VLRY++GTI   L+    S  ++  + D  +
Sbjct: 113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDW 172

Query: 67  LSDPHKARSQTGYLFTCGGTAISWRSVKQTMTVTSLNHAEILAIHEASRKCAW 120
                  RS TG+    G   ISW + +Q     S    E  A+   + +  W
Sbjct: 173 AGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc05g0126611 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21506.1	9.5e-110	89.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	2.0e-107	87.89	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
KAF7137709.1	3.3e-94	76.13	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]
ERM98543.1	3.3e-94	75.68	hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]	[more]
WP_168415592.1	6.8e-92	72.20	Ty1/Copia family ribonuclease HI [Acinetobacter indicus]	[more]

BLAST of Cmc05g0126611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.6e-27	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.2e-25	33.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.3e-24	31.90	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	4.7e-19	37.50	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q12491	5.0e-13	26.98	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc05g0126611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD63	4.6e-110	89.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	9.6e-108	87.89	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
U5CXL6	1.6e-94	75.68	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s043...	[more]
A0A2N9IR78	1.8e-93	75.23	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9HZE8	3.0e-93	75.23	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc05g0126611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.8e-21	37.13	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	2.4e-10	43.04	Gag-Pol-related retrotransposon family protein	[more]
ATMG00810.1	1.2e-09	29.20	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 5..83
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 5..83
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 59..204 e-value: 1.17625E-44 score: 144.148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0126611.1	Cmc05g0126611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding