Cmc05g0126121 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0126121
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-Pol polyprotein
Location	CMiso1.1chr05: 3103389 .. 3103790 (+)
RNA-Seq Expression	Cmc05g0126121
Synteny	Cmc05g0126121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTAAGAAAACTGAAGCAATTCGAACTTGGCCAATCCCAGCTTCTATCAAAGAAATCCAAGCCTTTCTTGGATTAGTTTCTTTTTACAGGAAGTTTATAAGAAATTTCAGTTCTATTGTTGCTCCACTTATCGATTGCTTAAAGAAGGGGAACTTTAAGTGGAATACACAGCAGCAAGAAAGCTTCAATAACATCAAGAAGAAATTGACTTCTAGCCCTATATTACAACTTCCAGACTTCAATTCACCTTTTGAAGTTGCAGTCGATGCATGTGGCATGGGAATTGGAGTTGTTCTCTCTCAAAAAGGGCACCCAGTTGAATTTTTTAGTGAAAAGCTCAGCACATCTAGACAGTCATGGAACACATACGAGCAGGAATTGTATGCTTTTATCTGA

mRNA sequence

ATGGAACCTAAGAAAACTGAAGCAATTCGAACTTGGCCAATCCCAGCTTCTATCAAAGAAATCCAAGCCTTTCTTGGATTAGTTTCTTTTTACAGGAAGTTTATAAGAAATTTCAGTTCTATTGTTGCTCCACTTATCGATTGCTTAAAGAAGGGGAACTTTAAGTGGAATACACAGCAGCAAGAAAGCTTCAATAACATCAAGAAGAAATTGACTTCTAGCCCTATATTACAACTTCCAGACTTCAATTCACCTTTTGAAGTTGCAGTCGATGCATGTGGCATGGGAATTGGAGTTGTTCTCTCTCAAAAAGGGCACCCAGTTGAATTTTTTAGTGAAAAGCTCAGCACATCTAGACAGTCATGGAACACATACGAGCAGGAATTGTATGCTTTTATCTGA

Coding sequence (CDS)

ATGGAACCTAAGAAAACTGAAGCAATTCGAACTTGGCCAATCCCAGCTTCTATCAAAGAAATCCAAGCCTTTCTTGGATTAGTTTCTTTTTACAGGAAGTTTATAAGAAATTTCAGTTCTATTGTTGCTCCACTTATCGATTGCTTAAAGAAGGGGAACTTTAAGTGGAATACACAGCAGCAAGAAAGCTTCAATAACATCAAGAAGAAATTGACTTCTAGCCCTATATTACAACTTCCAGACTTCAATTCACCTTTTGAAGTTGCAGTCGATGCATGTGGCATGGGAATTGGAGTTGTTCTCTCTCAAAAAGGGCACCCAGTTGAATTTTTTAGTGAAAAGCTCAGCACATCTAGACAGTCATGGAACACATACGAGCAGGAATTGTATGCTTTTATCTGA

Protein sequence

MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQSWNTYEQELYAFI

Homology

[Close]

BLAST of Cmc05g0126121 vs. NCBI nr
Match: TYK23247.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 6.8e-55
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           MEPKK EAI TWP P  IKE+QAFLGL SFY+KFIRNFSSIVAPL DCLKKGNFKW+ +Q
Sbjct: 1   MEPKKVEAIHTWPAPTYIKEVQAFLGLASFYKKFIRNFSSIVAPLTDCLKKGNFKWDQEQ 60

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           QESF +IK++ TSSPILQLPDF SPFEV VDACG GIG VLSQ+GHP+++F+EKLS+SRQ
Sbjct: 61  QESFEDIKRRPTSSPILQLPDFASPFEVPVDACGTGIGAVLSQQGHPIQYFNEKLSSSRQ 120

Query: 121 SWNTYEQELYAFI 134
           SW+TYEQELYA +
Sbjct: 121 SWSTYEQELYALV 133

[Close]

BLAST of Cmc05g0126121 vs. NCBI nr
Match: KAA0062943.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 2.9e-53
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           MEPKK EAI++WP P SIKE+QAFLGL SFY++FIRNFSSIV PL D LKK NFKW   Q
Sbjct: 668 MEPKKVEAIQSWPAPTSIKEVQAFLGLASFYKRFIRNFSSIVTPLTDYLKKENFKWEHMQ 727

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           Q+SF  IK++LTSSPILQLPDF SPFEV VDACG+GIG VLSQ+GHP+E+FSEKLS SRQ
Sbjct: 728 QQSFEEIKRRLTSSPILQLPDFTSPFEVVVDACGIGIGTVLSQQGHPIEYFSEKLSASRQ 787

Query: 121 SWNTYEQELYAFI 134
           SW+TYEQELYA +
Sbjct: 788 SWSTYEQELYALV 800

[Close]

BLAST of Cmc05g0126121 vs. NCBI nr
Match: KAA0057344.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.4e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 31  YRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQESFNNIKKKLTSSPILQLPDFNSPFEVAV 90
           YRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQESFNNIKKKLTSSPILQLPDFNSPFEVAV
Sbjct: 504 YRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQESFNNIKKKLTSSPILQLPDFNSPFEVAV 563

Query: 91  DACGMGIGVVLSQKGHPVEFFSEKLSTSRQSWNTYEQELYAFI 134
           DACGMGIGVVLSQKGHPVEFFSEKLSTSRQSWNTYEQELYAFI
Sbjct: 564 DACGMGIGVVLSQKGHPVEFFSEKLSTSRQSWNTYEQELYAFI 606

[Close]

BLAST of Cmc05g0126121 vs. NCBI nr
Match: KAA0056582.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK24264.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 98/133 (73.68%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           MEPKK EAI TW +P SIKE+QAFLGL SFYR F  NFSSIVAPL +CL+KGNFK +  Q
Sbjct: 243 MEPKKVEAIHTWRVPTSIKEVQAFLGLASFYRTFTINFSSIVAPLTECLEKGNFKRDQIQ 302

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           QESF  IK++LTSSPILQLP+F S FEVAVDAC   IG VLSQ+GHP+E+FSEKLS+SRQ
Sbjct: 303 QESFEEIKRRLTSSPILQLPNFASLFEVAVDACRTRIGAVLSQQGHPIEYFSEKLSSSRQ 362

Query: 121 SWNTYEQELYAFI 134
           SW+TYEQELYA +
Sbjct: 363 SWSTYEQELYALV 375

[Close]

BLAST of Cmc05g0126121 vs. NCBI nr
Match: KAA0051933.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 6.2e-48
Identity = 88/133 (66.17%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           M+ KK EAI+ WPIP S+KE+QAF+GL SFYRKFI NF +I AP++DCLKKG+F W  ++
Sbjct: 159 MDEKKVEAIKNWPIPTSVKEVQAFVGLASFYRKFIHNFITIAAPIMDCLKKGSFLWGNKR 218

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           Q+SF  +K+KL+++PIL+LPDF+ PFEVAVDACG GIG  LSQ GHP+EFFSEKL  SRQ
Sbjct: 219 QDSFELLKEKLSNNPILELPDFSQPFEVAVDACGTGIGSFLSQTGHPIEFFSEKLCPSRQ 278

Query: 121 SWNTYEQELYAFI 134
           +W+TYEQE+YA +
Sbjct: 279 TWSTYEQEMYALV 291

[Close]

BLAST of Cmc05g0126121 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 59/134 (44.03%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 3   PKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQE 62
           P+K EAI+ +PIP   KEI+AFLGL  +YRKFI NF+ I  P+  CLKK N K +T   E
Sbjct: 424 PEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKK-NMKIDTTNPE 483

Query: 63  ---SFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSR 122
              +F  +K  ++  PIL++PDF   F +  DA  + +G VLSQ GHP+ + S  L+   
Sbjct: 484 YDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHE 543

Query: 123 QSWNTYEQELYAFI 134
            +++T E+EL A +
Sbjct: 544 INYSTIEKELLAIV 556

[Close]

BLAST of Cmc05g0126121 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.5e-25
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 3   PKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQ- 62
           P K +AI ++PIP   KEI+AFLGL  +YRKFI N++ I  P+  CLKK   K +TQ+  
Sbjct: 423 PIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKK-RTKIDTQKLE 482

Query: 63  --ESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSR 122
             E+F  +K  +   PILQLPDF   F +  DA  + +G VLSQ GHP+ F S  L+   
Sbjct: 483 YIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHE 542

Query: 123 QSWNTYEQELYAFI 134
            +++  E+EL A +
Sbjct: 543 LNYSAIEKELLAIV 555

[Close]

BLAST of Cmc05g0126121 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-21
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 2   EPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGN-------- 61
           +P+K +AI+ +P P  + ++++FLGL S+YR FI++F++I  P+ D LK  N        
Sbjct: 398 DPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMS 457

Query: 62  ----FKWNTQQQESFNNIKKKLTSSP-ILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPV 121
                ++N  Q+ +F  ++  L S   IL+ PDF  PF++  DA   GIG VLSQ+G P+
Sbjct: 458 KKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPI 517

Query: 122 EFFSEKLSTSRQSWNTYEQELYAFI 134
              S  L    Q++ T E+EL A +
Sbjct: 518 TMISRTLKQPEQNYATNERELLAIV 542

[Close]

BLAST of Cmc05g0126121 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.2e-19
Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 2   EPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLK--KGNFKWNTQ 61
           +PKK  AI   P P S+KE++ FLG+ S+YRKFI++++ +  PL +  +    N K +  
Sbjct: 339 DPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQS 398

Query: 62  QQ----------ESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQ----KG 121
            +          +SFN++K  L SS IL  P F  PF +  DA    IG VLSQ    + 
Sbjct: 399 SKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRD 458

Query: 122 HPVEFFSEKLSTSRQSWNTYEQELYAFI 134
            P+ + S  L+ + +++ T E+E+ A I
Sbjct: 459 RPIAYISRSLNKTEENYATIEKEMLAII 486

[Close]

BLAST of Cmc05g0126121 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-15
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 2   EPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQ 61
           +P K EA+  WP P +  E++ FLGL  +YR+F++N+  IV PL + LKK + KW     
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAA 106

Query: 62  ESFNNIKKKLTSSPILQLPDFNSPFEVAV 91
            +F  +K  +T+ P+L LPD   PF   V
Sbjct: 107 LAFKALKGAVTTLPVLALPDLKLPFVTRV 135

[Close]

BLAST of Cmc05g0126121 vs. ExPASy TrEMBL
Match: A0A5D3DHV3 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002930 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.3e-55
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           MEPKK EAI TWP P  IKE+QAFLGL SFY+KFIRNFSSIVAPL DCLKKGNFKW+ +Q
Sbjct: 1   MEPKKVEAIHTWPAPTYIKEVQAFLGLASFYKKFIRNFSSIVAPLTDCLKKGNFKWDQEQ 60

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           QESF +IK++ TSSPILQLPDF SPFEV VDACG GIG VLSQ+GHP+++F+EKLS+SRQ
Sbjct: 61  QESFEDIKRRPTSSPILQLPDFASPFEVPVDACGTGIGAVLSQQGHPIQYFNEKLSSSRQ 120

Query: 121 SWNTYEQELYAFI 134
           SW+TYEQELYA +
Sbjct: 121 SWSTYEQELYALV 133

[Close]

BLAST of Cmc05g0126121 vs. ExPASy TrEMBL
Match: A0A5A7V4G7 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00370 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           MEPKK EAI++WP P SIKE+QAFLGL SFY++FIRNFSSIV PL D LKK NFKW   Q
Sbjct: 668 MEPKKVEAIQSWPAPTSIKEVQAFLGLASFYKRFIRNFSSIVTPLTDYLKKENFKWEHMQ 727

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           Q+SF  IK++LTSSPILQLPDF SPFEV VDACG+GIG VLSQ+GHP+E+FSEKLS SRQ
Sbjct: 728 QQSFEEIKRRLTSSPILQLPDFTSPFEVVVDACGIGIGTVLSQQGHPIEYFSEKLSASRQ 787

Query: 121 SWNTYEQELYAFI 134
           SW+TYEQELYA +
Sbjct: 788 SWSTYEQELYALV 800

[Close]

BLAST of Cmc05g0126121 vs. ExPASy TrEMBL
Match: A0A5A7UQ86 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001990 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.6e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 31  YRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQESFNNIKKKLTSSPILQLPDFNSPFEVAV 90
           YRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQESFNNIKKKLTSSPILQLPDFNSPFEVAV
Sbjct: 504 YRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQESFNNIKKKLTSSPILQLPDFNSPFEVAV 563

Query: 91  DACGMGIGVVLSQKGHPVEFFSEKLSTSRQSWNTYEQELYAFI 134
           DACGMGIGVVLSQKGHPVEFFSEKLSTSRQSWNTYEQELYAFI
Sbjct: 564 DACGMGIGVVLSQKGHPVEFFSEKLSTSRQSWNTYEQELYAFI 606

[Close]

BLAST of Cmc05g0126121 vs. ExPASy TrEMBL
Match: A0A5A7UL80 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00270 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 98/133 (73.68%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           MEPKK EAI TW +P SIKE+QAFLGL SFYR F  NFSSIVAPL +CL+KGNFK +  Q
Sbjct: 243 MEPKKVEAIHTWRVPTSIKEVQAFLGLASFYRTFTINFSSIVAPLTECLEKGNFKRDQIQ 302

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           QESF  IK++LTSSPILQLP+F S FEVAVDAC   IG VLSQ+GHP+E+FSEKLS+SRQ
Sbjct: 303 QESFEEIKRRLTSSPILQLPNFASLFEVAVDACRTRIGAVLSQQGHPIEYFSEKLSSSRQ 362

Query: 121 SWNTYEQELYAFI 134
           SW+TYEQELYA +
Sbjct: 363 SWSTYEQELYALV 375

[Close]

BLAST of Cmc05g0126121 vs. ExPASy TrEMBL
Match: A0A5D3CPI6 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00330 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.0e-48
Identity = 88/133 (66.17%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MEPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQ 60
           M+ KK EAI+ WPIP S+KE+QAF+GL SFYRKFI NF +I AP++DCLKKG+F W  ++
Sbjct: 159 MDEKKVEAIKNWPIPTSVKEVQAFVGLASFYRKFIHNFITIAAPIMDCLKKGSFLWGNKR 218

Query: 61  QESFNNIKKKLTSSPILQLPDFNSPFEVAVDACGMGIGVVLSQKGHPVEFFSEKLSTSRQ 120
           Q+SF  +K+KL+++PIL+LPDF+ PFEVAVDACG GIG  LSQ GHP+EFFSEKL  SRQ
Sbjct: 219 QDSFELLKEKLSNNPILELPDFSQPFEVAVDACGTGIGSFLSQTGHPIEFFSEKLCPSRQ 278

Query: 121 SWNTYEQELYAFI 134
           +W+TYEQE+YA +
Sbjct: 279 TWSTYEQEMYALV 291

[Close]

BLAST of Cmc05g0126121 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-16
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 2   EPKKTEAIRTWPIPASIKEIQAFLGLVSFYRKFIRNFSSIVAPLIDCLKKGNFKWNTQQQ 61
           +P K EA+  WP P +  E++ FLGL  +YR+F++N+  IV PL + LKK + KW     
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAA 106

Query: 62  ESFNNIKKKLTSSPILQLPDFNSPFEVAV 91
            +F  +K  +T+ P+L LPD   PF   V
Sbjct: 107 LAFKALKGAVTTLPVLALPDLKLPFVTRV 135

The following BLAST results are available for this feature:

BLAST of Cmc05g0126121 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23247.1	6.8e-55	77.44	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0062943.1	2.9e-53	75.94	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0057344.1	5.4e-52	100.00	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
KAA0056582.1	2.1e-48	73.68	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK24264.1 D...	[more]
KAA0051933.1	6.2e-48	66.17	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag...	[more]

BLAST of Cmc05g0126121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.2e-25	44.03	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.5e-25	44.03	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	3.0e-21	36.55	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	8.2e-19	35.14	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P92523	3.2e-15	40.45	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0126121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHV3	3.3e-55	77.44	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V4G7	1.4e-53	75.94	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UQ86	2.6e-52	100.00	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UL80	1.0e-48	73.68	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CPI6	3.0e-48	66.17	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Cmc05g0126121 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.3e-16	40.45	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 56..133 e-value: 1.5E-24 score: 85.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 4..94 e-value: 2.6E-30 score: 106.3
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 1..131
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..131
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0126121.1	Cmc05g0126121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding