Cmc05g0123871 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0123871
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	AvrRpt-cleavage domain-containing protein
Location	CMiso1.1chr05: 1395153 .. 1397603 (+)
RNA-Seq Expression	Cmc05g0123871
Synteny	Cmc05g0123871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTAATTTGGATATCCCTATTTTGAAGTTGTTTGTATTAAGAACAGACATATATAGGTTTTTAATTAGAAGATGATTTCTCACCTTCATTTTCCCTCTCTGTTGTTTGTCTCCTCCTACCTCCACCTCTCCTCTTCGACACGCTATGGCTGCTCGGAAGGAGGTAATTTAATTTTTCTTTTTTCCCTCTCCATTATTTCATTAATTTCTTTTGTTATTGTGTAATGTTTATCCCATGAGTTTATTTATTTAAATTTTCAATGTTTGAAATCTGGAGTTCAATCTCCTATGAAAATTCTCTCATTTCCTTTTTTTTTTTTCCTTTTCTTTTTATCAAATCTCATTTTCGTGTTAAAATAGTATATTTGTAGTAATGTTATATTATTATTAAGAAAAAAGAAGCATTTAGAGGATGATTATGCTTTAAGTTGATTAATTAAATATTTTGGTCTTTGCTTGAAACTTTGGGAGTCTTTTTGTATCAAAATTAGGAAGTAGAATGAATTATAGATACAAAAATTAGGTAGTAGAATGAATTATAGAGACTCAATAGTTCAAAATTTTGATTAAGAGATTGTTAATCATCCAAAATTTTAGCTAAAAGTTAGAAACATTTCATCTCAAACGTCCGAACAATGATTAAGTGCATCTCCATGTTTCCCATTCTCTATACAAAAACAATACTTTTTTAGTAATTTTTTAAAAGAATAAATTTTCACGTGATAACTTTTAATTGAGTGTAGCCGAAGTTTTTTTCTTTTCTAAAATAGAAAATGGAAAAGTTATCATAAATTTTTTTTTATTTTCTTCTCCTAAATCAAGAGAATCCTTGTATTTGATTCTCTTGCATCTGGAACAATTCCTGGCAAAAACAACCATAATGGACAAATAAGAAAACAATCAAAATCATAAAAATTGGTGATGTGAGGAAGAAAAATATGATGAATCTCTTTGAATATGCAACTAAAAGTTTGGTTGGAATATTTGTGTGTTTATGCAGAATAATAGGTGGAGATCAGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCAGGAGCAAGCAATTATTCTGTTGTATTTACTCGAGCTCGAGCCGATAGAAAACAACAAAAAACTGACTTAACTGAGTTCAAAAAAACCAGCCTAGGGAATGAAAGGGAGTTAATGGAAGCCATGGATAAAAGTCATTGTCACCAAAAACATCGCCATCATCGCCATCGCCATCACCATGAACACCAACACCGCCACCATCACCACCAACATCATCATCAACCACCCCCAGATGACTCTGTTGGCCCAGTAAGTACTTTCGTCTATTCTCTTTTAAGTACAAAAAATAGGGAAAAAGAGGACTTGAGCCTCCGACCTCAAGAAAACAACTACTTTTTTCTTGTCAATTATTATAATGAGTTATGTTTATTTTTTGCCAGCATCAGTTGTTCTTTTCCCTCTTTAATCTCAAATGAGATCTACAACTAGCCTTTTTTTTTTTTTGGATAACCCTCCCGACAAGCAACAATTGGGTGTCAAAAAAAAAAAAACACACAAAATATTAAATCCCATTCAAGTTTAACCACATATTAAATCCATTATCTCTAAGCTCTTTATCAAACCCACGGTCCTCTTCAAAAGGCCAATCGGAACTTTAAACTTAATGAAGAAAACGAAACAAGAATTCAATGTAACATTTGATAACAGAAGCTGAAAAGAATTTGTATCGAAGAAAGTACCTGTTGGATACTAAGGCTGAGGAACAGATGCTGTATGATATCCCTTAATGGGTGATTACTTTTATGCTATTCATGATGGTGGCAACTTCATTTATAGCCTTCTGTGAAGTTGCTCTTCCAGTAATTAGAGCTTTTCCCGAAGTTTAACCACAGCTGTAACTTTAAAGTAATGCGCGATTATCTTAAAATAATAAGACTACAGTTCTTATCTTACTTAGTATCTTGTTCTACTATACAATGGACATAAGCATATTTGTAATAGCATTTATAATAGCAGGCTTTGTAACGATCATTTCAAGATGGATTCTGTATTGACCTAAAAATTGATAGTAAAATAGAGACCGAAGAAACGTGAGTGATTGCAACATAATTTTTGTAAAACATATAAATTAATATAAATATTGCAAATTTAATGCTTGTTCTTTTCTTTTTTCTTATCCAGCAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGAGACAGAAGCCAACTCACTCCTCTATGTTTTTGTCACATCGTGCTGTTTTTCTCAATCCTTTTTTTTTCTTGCATGTAAATGTAGATGAGACAAGTTCATCATATGGATAATTGCACGAATTTCCCCTTCCCTGCATCTTGTTTAGGCTCTTTAGCTTATAAAACATGGAACCTTGAAATTTATTTTCTTACTTCATGGAGGAAAACAAGGTAAATAAACTAT

mRNA sequence

GTCTAATTTGGATATCCCTATTTTGAAGTTGTTTGTATTAAGAACAGACATATATAGGTTTTTAATTAGAAGATGATTTCTCACCTTCATTTTCCCTCTCTGTTGTTTGTCTCCTCCTACCTCCACCTCTCCTCTTCGACACGCTATGGCTGCTCGGAAGGAGAATAATAGGTGGAGATCAGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCAGGAGCAAGCAATTATTCTGTTGTATTTACTCGAGCTCGAGCCGATAGAAAACAACAAAAAACTGACTTAACTGAGTTCAAAAAAACCAGCCTAGGGAATGAAAGGGAGTTAATGGAAGCCATGGATAAAAGTCATTGTCACCAAAAACATCGCCATCATCGCCATCGCCATCACCATGAACACCAACACCGCCACCATCACCACCAACATCATCATCAACCACCCCCAGATGACTCTGTTGGCCCAAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGAGACAGAAGCCAACTCACTCCTCTATGTTTTTGTCACATCGTGCTGTTTTTCTCAATCCTTTTTTTTTCTTGCATGTAAATGTAGATGAGACAAGTTCATCATATGGATAATTGCACGAATTTCCCCTTCCCTGCATCTTGTTTAGGCTCTTTAGCTTATAAAACATGGAACCTTGAAATTTATTTTCTTACTTCATGGAGGAAAACAAGGTAAATAAACTAT

Coding sequence (CDS)

ATGGCTGCTCGGAAGGAGAATAATAGGTGGAGATCAGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCAGGAGCAAGCAATTATTCTGTTGTATTTACTCGAGCTCGAGCCGATAGAAAACAACAAAAAACTGACTTAACTGAGTTCAAAAAAACCAGCCTAGGGAATGAAAGGGAGTTAATGGAAGCCATGGATAAAAGTCATTGTCACCAAAAACATCGCCATCATCGCCATCGCCATCACCATGAACACCAACACCGCCACCATCACCACCAACATCATCATCAACCACCCCCAGATGACTCTGTTGGCCCAAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA

Protein sequence

MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEAMDKSHCHQKHRHHRHRHHHEHQHRHHHHQHHHQPPPDDSVGPKKKKILTYINCCIRP

Homology

[Close]

BLAST of Cmc05g0123871 vs. NCBI nr
Match: XP_038901152.1 (lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 1.8e-46
Identity = 103/126 (81.75%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERE 60
           MAAR E NRWRSVPEFGGWDHNAPGASNYSVVFT+ARADRKQ+KTDLTEFK+TSLGNERE
Sbjct: 1   MAARTEKNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERE 60

Query: 61  LMEAMDKSHCHQKHRHHRHRHHHEHQHRH-----HHHQHHHQPPPDDSVGPKKKKILTYI 120
           LM A  K H HQKH HHRH HHHE QH+H     HHH H HQPP DDSV PKKKKILTYI
Sbjct: 61  LMAATGKCHRHQKHHHHRHHHHHEQQHQHQHQHRHHHHHRHQPPADDSVVPKKKKILTYI 120

Query: 121 NCCIRP 122
           NCCIRP
Sbjct: 121 NCCIRP 126

[Close]

BLAST of Cmc05g0123871 vs. NCBI nr
Match: XP_038901151.1 (lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-45
Identity = 103/127 (81.10%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERE 60
           MAAR E NRWRSVPEFGGWDHNAPGASNYSVVFT+ARADRKQ+KTDLTEFK+TSLGNERE
Sbjct: 1   MAARTEKNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERE 60

Query: 61  LMEAMDKSHCHQKHRHHRHRHHHEHQHRH-----HHHQHHHQPPPDDSVGP-KKKKILTY 120
           LM A  K H HQKH HHRH HHHE QH+H     HHH H HQPP DDSV P KKKKILTY
Sbjct: 61  LMAATGKCHRHQKHHHHRHHHHHEQQHQHQHQHRHHHHHRHQPPADDSVVPQKKKKILTY 120

Query: 121 INCCIRP 122
           INCCIRP
Sbjct: 121 INCCIRP 127

[Close]

BLAST of Cmc05g0123871 vs. NCBI nr
Match: KAE8647369.1 (hypothetical protein Csa_004264 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-41
Identity = 96/117 (82.05%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERE 60
           MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFT+ARADRKQQKTDLTEFKKTSLGNE+E
Sbjct: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60

Query: 61  LMEAMDKSHCHQKHRHHRHRHH----------HEHQHRHHHHQHHHQPPP-DDSVGP 107
           LMEA+DK H HQKHRHHRHRH           H+H+H+HHHHQHHHQ PP DDSVGP
Sbjct: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGP 117

[Close]

BLAST of Cmc05g0123871 vs. NCBI nr
Match: KAG6605945.1 (hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035891.1 hypothetical protein SDJN02_02690, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-31
Identity = 83/121 (68.60%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64
           ++NNRW+SVPEFGGWDHNAPGASNYSVVF++ARA+RKQQKTDLTEFK+ SLGNERE+M  
Sbjct: 6   EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAM 65

Query: 65  MDKSHCHQKHRHHRHRHHHEHQHRHHHH---QHHHQPPPDDSVGP-KKKKILTYINCCIR 122
            DK    Q H HHRH  H+ H  R+ HH   QH  +P   D V P KKKKILTYINCCIR
Sbjct: 66  ADKHLRQQNHHHHRHHSHNSHHSRYEHHPQYQHRLRPHQHDPVVPQKKKKILTYINCCIR 125

[Close]

BLAST of Cmc05g0123871 vs. NCBI nr
Match: XP_023512838.1 (dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64
           +  NRW+SVPEFGGWD+N P ASNYSVVF+RARA++KQQKTDLTEFK+ SLGNE+ELM  
Sbjct: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65  MDKSHCHQKHRHHRHRHHHEHQHRH-HHHQHHHQPPPDDSVGPKKKKILTYINCCIRP 122
            DK   H +H  HRHRH H HQH H  HH HH Q P D +V  KKKKIL+ ++CCI+P
Sbjct: 64  ADK---HDRHHQHRHRHEHRHQHHHQRHHPHHGQLPVDGAVVGKKKKILSCMSCCIKP 118

[Close]

BLAST of Cmc05g0123871 vs. ExPASy TrEMBL
Match: A0A0A0KK09 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.0e-50
Identity = 111/133 (83.46%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERE 60
           MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFT+ARADRKQQKTDLTEFKKTSLGNE+E
Sbjct: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60

Query: 61  LMEAMDKSHCHQKHRHHRHRHH----------HEHQHRHHHHQHHHQPPP-DDSVGP-KK 120
           LMEA+DK H HQKHRHHRHRH           H+H+H+HHHHQHHHQ PP DDSVGP KK
Sbjct: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPEKK 120

Query: 121 KKILTYINCCIRP 122
           KKILTYINCCIRP
Sbjct: 121 KKILTYINCCIRP 133

[Close]

BLAST of Cmc05g0123871 vs. ExPASy TrEMBL
Match: A0A6J1JCC4 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.7e-29
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64
           +  NRW+SVPEFGGWD+N P ASNYSVVF+RARA++KQQKTDLTEFK+ SLGNE+ELM  
Sbjct: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65  MDKSHCHQKHRHHRHRHHHEHQHRHH-HHQHHHQPPPDDSVGPKKKKILTYINCCIRP 122
            DK   H +H  H HR  H HQH HH HH HH Q P D +V  KKKKIL+ ++CCI+P
Sbjct: 64  ADK---HDRHHQHHHRREHRHQHHHHRHHPHHGQLPADGAVVGKKKKILSCMSCCIKP 118

[Close]

BLAST of Cmc05g0123871 vs. ExPASy TrEMBL
Match: A0A6J1DJD7 (lateral signaling target protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC111020600 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.7e-29
Identity = 82/106 (77.36%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERE 60
           M ARKEN  WRSVPEFGGWDHNAPGASNYSVVFT+ARA+RKQQKTDLTEFK++SLGNERE
Sbjct: 1   MDARKENG-WRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERE 60

Query: 61  LMEAMDKSHCHQKHRH-HRHRHHHEHQH-RHHHHQHHHQPPPDDSV 105
           LM A       QKHRH HRHRH H++QH RHHHHQHHHQ   DDS+
Sbjct: 61  LMAAAGH---QQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 102

[Close]

BLAST of Cmc05g0123871 vs. ExPASy TrEMBL
Match: A0A6J1JEB9 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.3e-29
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64
           +  NRW+SVPEFGGWD+N P ASNYSVVF+RARA++KQQKTDLTEFK+ SLGNE+ELM  
Sbjct: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65  MDKSHCHQKHRHHRHRHHHEHQHRHH-HHQHHHQPPPDDS-VGPKKKKILTYINCCIRP 122
            DK   H +H  H HR  H HQH HH HH HH Q P D + VG KKKKIL+ ++CCI+P
Sbjct: 64  ADK---HDRHHQHHHRREHRHQHHHHRHHPHHGQLPADGAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of Cmc05g0123871 vs. ExPASy TrEMBL
Match: A0A6J1FX29 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.0e-28
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64
           +  NRW+SVPEFGGWD+N P ASNYSVVF+RARA++KQQKTDLTEFK+ SLGNE+ELM  
Sbjct: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65  MDKSHCHQKHRHHRHRHHHEHQHRH-HHHQHHHQPPPDDSVGPKKKKILTYINCCIRP 122
            DK   H +H  HRHRH H  QH H  HH HH Q P   +V  KKKKIL+ ++CCI+P
Sbjct: 64  ADK---HDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGAVVGKKKKILSCMSCCIKP 118

[Close]

BLAST of Cmc05g0123871 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPG-ASNYSVVFTRARADRKQQKTDLTEFKKTSLGNER 60
           M  R+EN  W  VP+FGGWD   P  A+NYSVVF++ARA+RKQ K  +   + +SLG+E+
Sbjct: 1   MDKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQ 60

Query: 61  ELMEAMDKSHCHQKHRHHRHRHHHEHQHRHHHHQHHHQPPPDDSVGPKKKKILTYINCCI 120
           ELM ++                      R+H   HH     DD    KKK+ILTYINCCI
Sbjct: 61  ELMVSV---------------------RRNHQQLHHRHETQDDDPVMKKKRILTYINCCI 98

Query: 121 RP 122
           RP
Sbjct: 121 RP 98

The following BLAST results are available for this feature:

BLAST of Cmc05g0123871 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901152.1	1.8e-46	81.75	lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]	[more]
XP_038901151.1	4.4e-45	81.10	lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]	[more]
KAE8647369.1	6.6e-41	82.05	hypothetical protein Csa_004264 [Cucumis sativus]	[more]
KAG6605945.1	2.8e-31	68.60	hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512838.1	2.6e-29	65.25	dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc05g0123871 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc05g0123871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK09	5.0e-50	83.46	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G43...	[more]
A0A6J1JCC4	3.7e-29	64.41	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1DJD7	3.7e-29	77.36	lateral signaling target protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1JEB9	6.3e-29	64.71	dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FX29	7.0e-28	63.56	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Cmc05g0123871 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19473.1	1.4e-17	44.26	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 9..41 e-value: 2.9E-8 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..95
None	No IPR available	PANTHER	PTHR33882:SF11	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 1..120
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0123871.1	Cmc05g0123871.1	mRNA