Cmc04g0120751 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0120751
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Phycobilisome rod-core linker polypeptide CpcG2 like
Location	CMiso1.1chr04: 36161747 .. 36164452 (+)
RNA-Seq Expression	Cmc04g0120751
Synteny	Cmc04g0120751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAGGTTCTGGTTTTTCTACAACCACGCACATTATAAATTGAGGCGAGAAGTCCGGCTGCCGCATAGACATCGTGGTTGGCTTGCGATTGAGGGAAATTAGGGCATCATACTTCTGTCTTCTCCAACGCTATTTTTACGTAATCATTTCTCCTAACTTCCTCTTTTTCGATCGACTTTCTTTTGTTCAGAAACCCATATGTGTGGGGTTTTTTTTTTTTCCATTGACTGAAGGGTTTTGCATGTCCTTTTTGTTTCTTTACTTTTTATGCGTTCTTTCACTTTATGCCGGTTGTTTTGATACCTAGAAGGAAGGTTAAACTAGTTTCTGTTATCTTTTTCTATCATTTCAGGCATCTGAATTGGCATTGATTTATTTTAATTTCTGGAAACGAGCATGGCGGGTGGAAATTTCATCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGGTAATGAATGTTAAGGCTTTATTGCATAAGAGGATTTTTTTATCTTTCGTTTTGATTTGGACGATGATGAATCGATGATATATGCATGAAGAGGCTTCATTCTCTGGCCGGAGGGATGGGTTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAAATATTCATAGATTTTCTTTTATGTTTATCGGCTGCCTTCATCGTTGGGTGTGCAGATGAGGAAATCTTGGAAATTTTGGCTATAGCTCCTTCAATTTTCCTTTTATTGGATTGATGTCTCGCTATCTTCTTGATGTCTCATTATCTTCGTTTAGTTTTATTAGCTTTAGAGGTTCGTTGGTCATTGTGCGTTGCACAGCTTAGGAAATTTGTTAAACTTTTAGTATAAATCCGTTTTCTATTTCTTTTATGAGGATCGATGGTGCCTGATCTATGTTTATTGAAACAATGCTAGAATCGTAACTTAGTGGTTGAGTTTGAGTAAAATTTTATATTTTGATATTGTTTTTCATTTGGCGTGATCAGTTCAGTTATTTGTATAAGTTCCATCAGTTGGAATACGATAGAGTCACGAACGTCAGTGAAGCCAAGCCATATAAAGGCGAGCGACCCAACTACCAATAGCAAACGAAGCACTTATATAGCCTCTTTTCCCCCCTACATACTCGCTGTTCTCTCTTAAAGCTCGTATAAAAGAAGACGAGGGTACCACTTTCTGTTTCAAATAGAATTTATATGTGAATAGAGAATGAACCAACTATATTCATGGTTTGCTAATATAAAGTAGAACAAAAATAATAAGAAAGATTTTAACTTGGGCTTCTTTTTCTTGAAATATTAAATTGGTTAATTATGGGGTTGAGTTTAAGGTTTTGTTTCTTTATAAGAAGTTATTTTATTTGAAGCATGAACTATATGCTAATTAGCAGGGGAGGAAATATTTATCTAAGGCATAGAGATAGCTCAAAGCTACCAGAAATTATAAAAAAAAGTCTATAAATCTTGCACCTGATCAAAATTTAGAACCACTAGCACAAAGCAATCCTGTAGAACATAAAGGCAGTAGCCTTTTCAAATGTAGTTCGGTAAGGACATGAAAGAATGGATGCTTGCCTAATCGAAACTATTGGTCATAAGGGGGTTTGTCAGAGAAACAGAGCAAAACGAAAGTGGTGTTACAAGTTCTTTTATCTGGGGGCAATTTTCTCCTTTATTTGCATCGTATATTTCTTTGTTCTATTCAAAATTCTGTGTCATGAGGCTTCAACTGTTGTTATTTTTGCATCTGGAACAGTGTCACAAATATTGTTTTTTGTTGTCTTTCCCAAGATTGTCTCCTATGCCCTTGTTTGAACAATAGCAAATGTTGACTTTGTATGCTTGTAATGATTGTTGAGAGGATTGTATCAATTATACTTGTAAGAGTTGAACTGTCTAGGCATTCTTTTTCCAGCATTTCTGCCATTGAATCAAATATTTTTAAGCTCAGTAACAATTGAAGTTACAGTTGTCTGCTTAATACTAATTGTTCATTCTCATGAATTTATTCAACTCTCATTGTCCTTTTCTGCAGCCGTTCCTTTCAAAGGTTTGCTGTGAAGACATCGAAACAAATTGAGGATATATCTACCAAGGGTAGAAACTTTAAACTGCTTTCGCTTCATTGATTTCAATTTTACTTTATTTATTGTTGAGCTGGTTTAACTTATGCTAGTAAGACTGGGATTGTTTTGCAGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAGAATTTTGATGTGAGATGTTTCTTTCCACTTAGATCTTTTCATTTTGAATAGCATAGACGTAACCTTATGCCCTGTATTCGCTCGTGTTGCAGTCTTTCAAGAACCATTAATGTGGAGTGGAACGTTTTATGGCAACATGATGTAAATCCTATTCCAATTTTACTCTTAATAGTCGCAGATTCCCCGAAGATTTGTTTAATAACCTTATCTTGTCTACGTGTTTTGTAATTGTGACAGTAGAATTCTAGATTTGTTCTTGGTTACCCGGTTGCCTTTGCCTGTAATTGAAGCGAAGATGAACTGATTTCTTCCTTGGCTTATGCCTGCATGTATCTGATTTTGTAGCTTTTTTCCCCGCCATTATCATCATTGGACAGTGGGACTTTTAAATAGGTCTTGAAACAAAGACATGGCAATTGAAAGTCATAACAAGTTTGCTTTCGATTTTTTAA

mRNA sequence

TGGAAGGTTCTGGTTTTTCTACAACCACGCACATTATAAATTGAGGCGAGAAGTCCGGCTGCCGCATAGACATCGTGGTTGGCTTGCGATTGAGGGAAATTAGGGCATCATACTTCTGTCTTCTCCAACGCTATTTTTACGCATCTGAATTGGCATTGATTTATTTTAATTTCTGGAAACGAGCATGGCGGGTGGAAATTTCATCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAAGACATCGAAACAAATTGAGGATATATCTACCAAGGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAGAATTTTGATTCTTTCAAGAACCATTAATGTGGAGTGGAACGTTTTATGGCAACATGATGTAAATCCTATTCCAATTTTACTCTTAATAGTCGCAGATTCCCCGAAGATTTGTTTAATAACCTTATCTTGTCTACGTGTTTTGTAATTGTGACAGTAGAATTCTAGATTTGTTCTTGGTTACCCGGTTGCCTTTGCCTGTAATTGAAGCGAAGATGAACTGATTTCTTCCTTGGCTTATGCCTGCATGTATCTGATTTTGTAGCTTTTTTCCCCGCCATTATCATCATTGGACAGTGGGACTTTTAAATAGGTCTTGAAACAAAGACATGGCAATTGAAAGTCATAACAAGTTTGCTTTCGATTTTTTAA

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCATCCACAGAGTATTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAACAGCCGTTCCTTTCAAAGGTTTGCTGTGAAGACATCGAAACAAATTGAGGATATATCTACCAAGGCTGCACAGAAGAAGCAAGAACTTGCAGAACAAGTGAAAGATTTCTCCAAGAATTTTGATTCTTTCAAGAACCATTAA

Protein sequence

MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKDFSKNFDSFKNH

Homology

[Close]

BLAST of Cmc04g0120751 vs. NCBI nr
Match: XP_008442394.1 (PREDICTED: uncharacterized protein LOC103486274 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60

Query: 61 FSKNFDSFKNH 72
          FSKNFDSFKNH
Sbjct: 61 FSKNFDSFKNH 71

[Close]

BLAST of Cmc04g0120751 vs. NCBI nr
Match: XP_004137707.1 (uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical protein Csa_001726 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDSFKNH 72
          FSKNFDSFKNH
Sbjct: 61 FSKNFDSFKNH 71

[Close]

BLAST of Cmc04g0120751 vs. NCBI nr
Match: XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAV+TSKQIEDISTKAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 FSKNFDSFKN 71
           SKNF+SFKN
Sbjct: 61 LSKNFESFKN 70

[Close]

BLAST of Cmc04g0120751 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDSFKN 71
           SKNFDSFKN
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Cmc04g0120751 vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAV+TSKQIEDIS KAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 FSKNFDSFKN 71
           SKNFDSFKN
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Cmc04g0120751 vs. ExPASy TrEMBL
Match: A0A1S3B691 (uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.3e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60

Query: 61 FSKNFDSFKNH 72
          FSKNFDSFKNH
Sbjct: 61 FSKNFDSFKNH 71

[Close]

BLAST of Cmc04g0120751 vs. ExPASy TrEMBL
Match: A0A0A0L9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.0e-28
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRVFSYLVNEVLVNSLANSRSFQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDSFKNH 72
          FSKNFDSFKNH
Sbjct: 61 FSKNFDSFKNH 71

[Close]

BLAST of Cmc04g0120751 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAV+TSKQIEDISTKAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 FSKNFDSFKN 71
           SKNF+SFKN
Sbjct: 61 LSKNFESFKN 70

[Close]

BLAST of Cmc04g0120751 vs. ExPASy TrEMBL
Match: A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSRSFQRFAV+TSKQIEDISTKAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 FSKNFDSFKN 71
           SKNF+SFKN
Sbjct: 61 LSKNFESFKN 70

[Close]

BLAST of Cmc04g0120751 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.2e-25
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAGGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKD 60
          MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAV+TSKQIEDIS KAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 FSKNFDSFKN 71
           SKNFDSFKN
Sbjct: 61 LSKNFDSFKN 70

[Close]

BLAST of Cmc04g0120751 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.9 bits (198), Expect = 4.6e-16
Identity = 39/67 (58.21%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 3  GGNFIHRVFSYLVNEVLVNSLANSRSFQRFAVKTSKQIEDISTKAAQKKQELAEQVKDFS 62
          GGNFI RV SY+ NE +VN LANS +FQRFAV+TSK+IE++S  AA+ ++++A+Q+++F+
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFDSFK 70
          KN DS K
Sbjct: 64 KNIDSTK 70

The following BLAST results are available for this feature:

BLAST of Cmc04g0120751 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442394.1	1.3e-28	100.00	PREDICTED: uncharacterized protein LOC103486274 [Cucumis melo]	[more]
XP_004137707.1	1.4e-27	95.77	uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical ...	[more]
XP_022949523.1	1.1e-24	91.43	uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar...	[more]
XP_022935686.1	1.5e-24	91.43	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]
XP_022983627.1	4.3e-24	90.00	uncharacterized protein LOC111482182 [Cucurbita maxima]	[more]

BLAST of Cmc04g0120751 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0120751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B691	6.3e-29	100.00	uncharacterized protein LOC103486274 OS=Cucumis melo OX=3656 GN=LOC103486274 PE=...	[more]
A0A0A0L9U5	7.0e-28	95.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731020 PE=4 SV=1	[more]
A0A6J1I5H8	5.5e-25	91.43	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]
A0A6J1GCB5	5.5e-25	91.43	uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1F5E7	7.2e-25	91.43	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]

BLAST of Cmc04g0120751 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	4.6e-16	58.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..60
None	No IPR available	PANTHER	PTHR34966	OSJNBA0043L24.15 PROTEIN	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0120751.1	Cmc04g0120751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding