Cmc04g0117731 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0117731
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	splicing factor 3A subunit 2
Location	CMiso1.1chr04: 34734021 .. 34737118 (-)
RNA-Seq Expression	Cmc04g0117731
Synteny	Cmc04g0117731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTTGTTGCTCAAATTGTAGACCGTACGGATTTCTCACTTCGGCGATTCGCTTCGACAAACAGAGAAAGGGGTTTTTAGGTCGCCGGAAGGACGAAGAAGATTTCTCAATCGGAGATCAGGTTCCGGTGTAGAAGTGACGCCGAAGTTCGACGGCGATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAAAATGAAGCTATTGACCGTAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCTTATTTTATGCGCAATCATCTTGGAAGGTCCATCCTTTTTCTTTCTCATTCTAGTCCTACCCGTTTTTTTTTTTTTGGTAATTCTTTAGTTGAATTTCATTGGTATTTGGGGTGTTTTTGTAGCTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTATTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCTGCCCGTGAAGCAAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGGCATGCTTTTGTGCCCTTCTCCTTTATGTATTTATAGCTTCAGCATTAATTGTGATTGAGGTGAACAATAAGTTTATTGTTGCTTCTTTGTAATCCTTCGGAAGGGTCGCTGCCAAGTTAATTTTAAGTTGCTTCTCGATAGTGAGGATTGATATGAAATGATTTTGGTATAATTCAACCCTTTGCAATGGTATTAATAATACTCTTAGTTTGACCATTTTATCATAATGACGTAATAGGAACAGCGAGTTTAAGATTTCTGCTTTTAAGTCAAGTAACATTGATATGTATCCAATTTACTTCACGTCGAGTAAGAATTAGCAGTTGGAAATGGCCAGTGTTGTGGGGTAGCTTTGAAATTTGAAGTGTTGGTTGTAATTTGCTGGATGTGTTCCTTATCGTTTGTGTTTGTACTTAAAAGTGGAGTAGTGCTAATTAACTCCTTCCCTGGCATACTTTCAGTTAAAATTGGAAGGCCCGGTTATCGAGTAACAAAGCAATTTGATTCTGAAACAAAGCAGCGATCTCTCCTTTTTCAGGTATGGCTTTATAGTTCGTACAACAGGCTTCTTTAGCATCTGTTGAAGATGATTTTTATTGAATTACTACTCAATTGTGTTGTGTCTGATTTGCCTCTCCTCCTTTCTTTACTCATACATTGTTGTTATTCCATGCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGGTTTATGTCCTCTTACGAGCAGGTTAACTAAGTTTCACTATTACATGCTTCTGAAAACTTGATATTGCCTTTTATCATTTCTATTTCTCTTAGAGCTAATTTTTCATTTTTATTGTTACTATGTTCAGCGTGTGCAACCTTTTGACAAACGATACCAATATCTTCTGTTTGCAGCCGAACCATATGAGATAATTGCATTCAAGGTATTCTAGACATGATAATCGTAAAATAAGTTGATCGTAGGTTTGGCTTTTTAGTTCCTACTGAGTACTGAAAGATCTTTACTTGAATGGATTTTAGGTTCCAAGCACAGAGATAGACAAATCGACTCCAAAATTCTTTTCACACTGGGATCCGGACTCTAAAATGTTCACGGTTTAGCTCTTTTCCTTCCTTCTAACTTATAAAAATACGAATACTTTTCTTATTCACGTGACACTCTTAGCTCATTACTTACAATTCATCTATATCTTAGGAATTTTAGGATTAATTTATAGCCGATTTTTAACTTTTCAGTGAATGAATTCAGTTTCTTTTTTAATCTATTTTGTTATTAAACAAATCTATTGTAGTTTGGCCTCCCCGTGAGTATTAGAAAAATATTAATCGGATAGATTGCATCATGATTCCCTTTTATTCTTACTACTTGTTTGACTTATTTTTGCTTTTGGGCCCCAAGAATCCGTGTATGCATTCTTGACTGGCTGATTGCATGCTTGGGAGTGGTTTTGAAATTTTCACTCCTTTAATCAGGTTTTGAAGTTTTAAATAAATTGATTAAATTGATTTTGAATAAGGCTTTTTCGGGTGTGATTTTGATAGAACATGATAAATGATTCTTCTCATTTCAACATCACTTTAAAACATATTTTTACGATTGGTTTTGAAATTGTTAATTGTGATTTCAAAATCACCTTCACGTCGTGTGGTTACACCTTATTTGTCAGCCCTTCATATTATTGGTTTTTATTCTTTCATATTTAAAAATCCGACACTCTTACTCTTTGATATGGTTAATGATTTAGCACTTTTAATCTTGGTTCCAAAAACCAAAATGGTTACAGTTTACTCTAGTAGTGTCATTTAGGTTTTGATGATGGACTTTTCTAACGACTATACTGAATATGTAATTTTGCAGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCGAACAAGCCACCACCTGTACCTGCAGCAAATGGAACAGTGCCATCTGGTGCACCTCCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCACCCCAGCAAGGAGCACCACCAAGAGTTCCTCCTCCTCCAATGCCAGGGTCCTTGCCGCCTCCACCTTCTGTAATGGCCAATGGTCCTCCTAGGCCGATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCACCACCTCCAGTTGGCAATAATACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGGCCTCCTATGCCGCCTCCTCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCACCACCACCACCACCCAATATGGGATAGGCCACTTTAGCATCGTTAAGGCAATGGATTTTAATTGTTAGCCTCATTAGTGAATTTTGATGCACTTTTCCTTTTCCGTTGTATGATCATATTTCGGCATGTAGAATCATAACATACCAACCTTTGAAATTGTTGTATCTTTTCAGGCAAAATGAGTATTTTGTTAATTGTGCCTATGTTTTCTTGTAGAGGCTTTGTATTTCACCTACTTAAACCATATATAATTATAAATATAAAAACAATTTTTTTCCTT

mRNA sequence

GACTTGTTGCTCAAATTGTAGACCGTACGGATTTCTCACTTCGGCGATTCGCTTCGACAAACAGAGAAAGGGGTTTTTAGGTCGCCGGAAGGACGAAGAAGATTTCTCAATCGGAGATCAGGTTCCGGTGTAGAAGTGACGCCGAAGTTCGACGGCGATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAAAATGAAGCTATTGACCGTAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCTTATTTTATGCGCAATCATCTTGGAAGCTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTATTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCTGCCCGTGAAGCAAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCCGGTTATCGAGTAACAAAGCAATTTGATTCTGAAACAAAGCAGCGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGGTTTATGTCCTCTTACGAGCAGCGTGTGCAACCTTTTGACAAACGATACCAATATCTTCTGTTTGCAGCCGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATAGACAAATCGACTCCAAAATTCTTTTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCGAACAAGCCACCACCTGTACCTGCAGCAAATGGAACAGTGCCATCTGGTGCACCTCCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCACCCCAGCAAGGAGCACCACCAAGAGTTCCTCCTCCTCCAATGCCAGGGTCCTTGCCGCCTCCACCTTCTGTAATGGCCAATGGTCCTCCTAGGCCGATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCACCACCTCCAGTTGGCAATAATACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGGCCTCCTATGCCGCCTCCTCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCACCACCACCACCACCCAATATGGGATAGGCCACTTTAGCATCGTTAAGGCAATGGATTTTAATTGTTAGCCTCATTAGTGAATTTTGATGCACTTTTCCTTTTCCGTTGTATGATCATATTTCGGCATGTAGAATCATAACATACCAACCTTTGAAATTGTTGTATCTTTTCAGGCAAAATGAGTATTTTGTTAATTGTGCCTATGTTTTCTTGTAGAGGCTTTGTATTTCACCTACTTAAACCATATATAATTATAAATATAAAAACAATTTTTTTCCTT

Coding sequence (CDS)

ATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAAAATGAAGCTATTGACCGTAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCTTATTTTATGCGCAATCATCTTGGAAGCTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTATTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCTGCCCGTGAAGCAAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCCGGTTATCGAGTAACAAAGCAATTTGATTCTGAAACAAAGCAGCGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGGTTTATGTCCTCTTACGAGCAGCGTGTGCAACCTTTTGACAAACGATACCAATATCTTCTGTTTGCAGCCGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATAGACAAATCGACTCCAAAATTCTTTTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCGAACAAGCCACCACCTGTACCTGCAGCAAATGGAACAGTGCCATCTGGTGCACCTCCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCACCCCAGCAAGGAGCACCACCAAGAGTTCCTCCTCCTCCAATGCCAGGGTCCTTGCCGCCTCCACCTTCTGTAATGGCCAATGGTCCTCCTAGGCCGATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCACCACCTCCAGTTGGCAATAATACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGGCCTCCTATGCCGCCTCCTCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCACCACCACCACCACCCAATATGGGATAG

Protein sequence

MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG

Homology

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BLAST of Cmc04g0117731 vs. NCBI nr
Match: XP_004137848.1 (splicing factor 3A subunit 2 [Cucumis sativus] >KGN59007.1 hypothetical protein Csa_002498 [Cucumis sativus])

HSP 1 Score: 648.7 bits (1672), Expect = 2.9e-182
Identity = 339/341 (99.41%), Postives = 341/341 (100.00%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAA+AQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPP+G
Sbjct: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPIG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 341

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BLAST of Cmc04g0117731 vs. NCBI nr
Match: XP_008442733.1 (PREDICTED: splicing factor 3A subunit 2 [Cucumis melo] >TYK25169.1 splicing factor 3A subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 647.9 bits (1670), Expect = 4.9e-182
Identity = 340/341 (99.71%), Postives = 340/341 (99.71%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG
Sbjct: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNRPPMPPPPQ FPGQGIRQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQPPPPPPNMG 341

[Close]

BLAST of Cmc04g0117731 vs. NCBI nr
Match: XP_038905938.1 (splicing factor 3A subunit 2 [Benincasa hispida])

HSP 1 Score: 644.4 bits (1661), Expect = 5.4e-181
Identity = 338/341 (99.12%), Postives = 339/341 (99.41%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRP+P
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPMP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAP PPPPPPQQG PPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG
Sbjct: 241 PPPQAPAPPPPPPQQGPPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 341

[Close]

BLAST of Cmc04g0117731 vs. NCBI nr
Match: KAA0043971.1 (splicing factor 3A subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 638.3 bits (1645), Expect = 3.9e-179
Identity = 339/350 (96.86%), Postives = 339/350 (96.86%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKT---------VKIG 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKT          KIG
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTGMLLCPSPLFKIG 120

Query: 121 RPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAA 180
           RPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAA
Sbjct: 121 RPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAA 180

Query: 181 EPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVP 240
           EPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVP
Sbjct: 181 EPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVP 240

Query: 241 SGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAP 300
           SGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAP
Sbjct: 241 SGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAP 300

Query: 301 PIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           PIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQ FPGQGIRQPPPPPPNMG
Sbjct: 301 PIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQPPPPPPNMG 350

[Close]

BLAST of Cmc04g0117731 vs. NCBI nr
Match: XP_023005145.1 (splicing factor 3A subunit 2 [Cucurbita maxima])

HSP 1 Score: 620.2 bits (1598), Expect = 1.1e-173
Identity = 329/341 (96.48%), Postives = 330/341 (96.77%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP  VPAANGTV       PLP
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTV-------PLP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPP VMANGPPRPMPPGGAPPIPPPPPVG
Sbjct: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPPVMANGPPRPMPPGGAPPIPPPPPVG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNR PMPPPPQGFPGQG+RQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRLPMPPPPQGFPGQGVRQPPPPPPNMG 334

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BLAST of Cmc04g0117731 vs. ExPASy Swiss-Prot
Match: Q15428 (Splicing factor 3A subunit 2 OS=Homo sapiens OX=9606 GN=SF3A2 PE=1 SV=2)

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-79
Identity = 206/364 (56.59%), Postives = 238/364 (65.38%), Query Frame = 0


Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSET 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K KV V+K VKIGRPGY+VTKQ DSE 
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEM 127

Query: 126 KQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTE 185
            Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187

Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEAN----------KPPPVPAANGTVPSGAP 245
           IDK+  KF++HW+ ++K F LQ +FK +   A           K PP P  NG  P    
Sbjct: 188 IDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPL 247

Query: 246 PRPLPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGSLPPPPSV--MANG--PPRPM 305
           P  LPPPP      PP PP  P    PP  P  PPP PG  PP P V   A+G  PP P 
Sbjct: 248 PESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPG 307

Query: 306 PPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMP---PPPQGF--PGQGIRQPPP---PP 342
               AP + PP P  +   +   P      PP P   PP  G   P  G+  P P   PP
Sbjct: 308 VHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP 367

[Close]

BLAST of Cmc04g0117731 vs. ExPASy Swiss-Prot
Match: A5PJN8 (Splicing factor 3A subunit 2 OS=Bos taurus OX=9913 GN=SF3A2 PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 8.1e-79
Identity = 203/359 (56.55%), Postives = 236/359 (65.74%), Query Frame = 0


Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSET 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K KV V+K VKIGRPGY+VTKQ D+E 
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEM 127

Query: 126 KQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTE 185
            Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187

Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEAN----------KPPPVPAANGTVPSGAP 245
           IDK+  KF++HW+ ++K F LQ +FK +   A           K PP P  NG  P    
Sbjct: 188 IDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPL 247

Query: 246 PRPLPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGSLPPPPSV--MANG--PPRPM 305
           P  LPPPP      PP PP  P    PP  P  PPP PG  PP P V   A+G  PP P 
Sbjct: 248 PESLPPPPPGGLPLPPMPPSGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPG 307

Query: 306 PPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPP---PPPNMG 342
               AP + PP PV +   +   P      PP P      P  G+  P P   PPP+ G
Sbjct: 308 VHPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHP--PAPGVHPPAPGVHPPPSAG 364

[Close]

BLAST of Cmc04g0117731 vs. ExPASy Swiss-Prot
Match: Q6AXT8 (Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 8.9e-78
Identity = 202/349 (57.88%), Postives = 238/349 (68.19%), Query Frame = 0


Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSET 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K KV V+K VKIGRPGY+VTKQ D+E 
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEM 127

Query: 126 KQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTE 185
            Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187

Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQA 245
           IDK+  KF++HW+ ++K F LQ +FK +     KPP  P    ++P+G P    PPPP  
Sbjct: 188 IDKAEGKFWTHWNRETKQFFLQFHFKME-----KPPAPP----SLPAGPPGVKRPPPPLM 247

Query: 246 PPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMANGPPRP--MPPGGAPPIPPPPPV 305
              PP PP    P  +PPPP PG LP    PP     +GPP P  MPP  AP + PP PV
Sbjct: 248 NGLPPRPP---LPDALPPPP-PGGLPLPPMPPTGPAPSGPPGPPQMPP-PAPGVHPPAPV 307

Query: 306 GNNTMANFTPGTQMNRPPMP---PPPQGF--PGQGIRQPPP--PPPNMG 342
            +   +   P      PP P   PP  G   P  G+  P P   PP  G
Sbjct: 308 VHPPTSGVHPPAPGVHPPAPVVHPPTSGVHPPAPGVHPPAPGVHPPAPG 342

[Close]

BLAST of Cmc04g0117731 vs. ExPASy Swiss-Prot
Match: Q62203 (Splicing factor 3A subunit 2 OS=Mus musculus OX=10090 GN=Sf3a2 PE=1 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 9.6e-72
Identity = 198/359 (55.15%), Postives = 225/359 (62.67%), Query Frame = 0


Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSET 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P + KV V+K VKIGRPGY+VTKQ D+E 
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVTKQRDTEM 127

Query: 126 KQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTE 185
            Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187

Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEAN----------KPPPVPAANGTVPSGAP 245
           IDK+  KF          F LQ +FK +   A           K PP P  NG  P    
Sbjct: 188 IDKAEGKF----------FFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPL 247

Query: 246 PRPLPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGSLPPPPSVMANGPPRPMPPGG 305
           P  LPPPP      PP PP  P    PP  P  PPP PG  PP P V    PP       
Sbjct: 248 PDALPPPPPGGLPLPPMPPTGPAPSGPPGPPQMPPPAPGVHPPAPVV---HPPTSGVHPP 307

Query: 306 APPIPPPPPVGNNTMANFTPGTQMNRPPMP---PPPQGF--PGQGIRQPPP--PPPNMG 342
           AP + PP PV +   +   P      PP P   PP  G   P  G+  P P   PP  G
Sbjct: 308 APGVHPPAPVVHPPTSGVHPPAPGVHPPTPGVHPPAPGVHPPAPGVHPPAPGVHPPTPG 353

[Close]

BLAST of Cmc04g0117731 vs. ExPASy Swiss-Prot
Match: Q54B65 (Splicing factor 3A subunit 2 OS=Dictyostelium discoideum OX=44689 GN=sf3a2 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 6.0e-66
Identity = 131/214 (61.21%), Postives = 170/214 (79.44%), Query Frame = 0


Query: 4   EWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNN 63
           E+G K GSGG  S+Q + IDRRER ++L LE +D++KDPY + NH+GS+EC+LCLT+HNN
Sbjct: 3   EYG-KAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNN 62

Query: 64  EGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPH---KRKVSVRKTVKIGRPGYRVTKQ 123
            GNYLAHTQGK+HQT+LA+RAA+E +E P+  + +     +V  +KT+KIGRPGY++ KQ
Sbjct: 63  VGNYLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTRVIHKKTIKIGRPGYKIIKQ 122

Query: 124 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 183
            DS+T Q SLLFQI+YPEIE   +PRHR MS++EQRV+  +K YQYLLFAAEPYE IAFK
Sbjct: 123 RDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFK 182

Query: 184 VPSTEIDKST---PKFFSHWDPDSKMFTLQLYFK 212
           +P+ EID++T    KFF+HWD  +K FTLQLYFK
Sbjct: 183 IPNKEIDRTTGPDGKFFTHWD-RNKTFTLQLYFK 214

[Close]

BLAST of Cmc04g0117731 vs. ExPASy TrEMBL
Match: A0A0A0LEB1 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743440 PE=3 SV=1)

HSP 1 Score: 648.7 bits (1672), Expect = 1.4e-182
Identity = 339/341 (99.41%), Postives = 341/341 (100.00%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAA+AQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPP+G
Sbjct: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPIG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 341

[Close]

BLAST of Cmc04g0117731 vs. ExPASy TrEMBL
Match: A0A5D3DPC7 (Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002950 PE=3 SV=1)

HSP 1 Score: 647.9 bits (1670), Expect = 2.4e-182
Identity = 340/341 (99.71%), Postives = 340/341 (99.71%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG
Sbjct: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNRPPMPPPPQ FPGQGIRQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQPPPPPPNMG 341

[Close]

BLAST of Cmc04g0117731 vs. ExPASy TrEMBL
Match: A0A1S3B729 (splicing factor 3A subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486522 PE=3 SV=1)

HSP 1 Score: 647.9 bits (1670), Expect = 2.4e-182
Identity = 340/341 (99.71%), Postives = 340/341 (99.71%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG
Sbjct: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNRPPMPPPPQ FPGQGIRQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQPPPPPPNMG 341

[Close]

BLAST of Cmc04g0117731 vs. ExPASy TrEMBL
Match: A0A5A7TQW8 (Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G003160 PE=3 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 1.9e-179
Identity = 339/350 (96.86%), Postives = 339/350 (96.86%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKT---------VKIG 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKT          KIG
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTGMLLCPSPLFKIG 120

Query: 121 RPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAA 180
           RPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAA
Sbjct: 121 RPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAA 180

Query: 181 EPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVP 240
           EPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVP
Sbjct: 181 EPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVP 240

Query: 241 SGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAP 300
           SGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAP
Sbjct: 241 SGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAP 300

Query: 301 PIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           PIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQ FPGQGIRQPPPPPPNMG
Sbjct: 301 PIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQPPPPPPNMG 350

[Close]

BLAST of Cmc04g0117731 vs. ExPASy TrEMBL
Match: A0A6J1KWM2 (splicing factor 3A subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111498269 PE=3 SV=1)

HSP 1 Score: 620.2 bits (1598), Expect = 5.3e-174
Identity = 329/341 (96.48%), Postives = 330/341 (96.77%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK
Sbjct: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP  VPAANGTV       PLP
Sbjct: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTV-------PLP 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVG 300
           PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPP VMANGPPRPMPPGGAPPIPPPPPVG
Sbjct: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPPVMANGPPRPMPPGGAPPIPPPPPVG 300

Query: 301 NNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPNMG 342
           NNTMANFTPGTQMNR PMPPPPQGFPGQG+RQPPPPPPNMG
Sbjct: 301 NNTMANFTPGTQMNRLPMPPPPQGFPGQGVRQPPPPPPNMG 334

[Close]

BLAST of Cmc04g0117731 vs. TAIR 10
Match: AT2G32600.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 416.4 bits (1069), Expect = 2.2e-116
Identity = 228/289 (78.89%), Postives = 237/289 (82.01%), Query Frame = 0


Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAAS QNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASGQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQ 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAK+AP +PQP KR VSVR+TVKIGRPGYRVTKQ
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTKPQPLKRNVSVRRTVKIGRPGYRVTKQ 120

Query: 121 FDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFK 180
           +D E +QRSLLFQIEYPEIED  KPRHRFMSSYEQ+VQP+DK YQYLLFAAEPYEIIAFK
Sbjct: 121 YDPELQQRSLLFQIEYPEIEDNIKPRHRFMSSYEQKVQPYDKSYQYLLFAAEPYEIIAFK 180

Query: 181 VPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLP 240
           VPSTE+DKSTPKFFSHWDPDSKMFTLQ+YFK    E NKP     ANG            
Sbjct: 181 VPSTEVDKSTPKFFSHWDPDSKMFTLQVYFKPTKPEPNKPQSAVGANG------------ 240

Query: 241 PPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGG 290
                PPPPPPPP Q  P   PPPP  G  PPPP  MAN   RPMPP G
Sbjct: 241 ----LPPPPPPPPHQAQP---PPPPPSGLFPPPPPPMANNGFRPMPPAG 270

[Close]

BLAST of Cmc04g0117731 vs. TAIR 10
Match: AT5G07740.1 (actin binding )

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-05
Identity = 65/129 (50.39%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 220  PPPVPAANGTVPSGAPPRPLPPPPQ--APPPPPPPPQQ-GAPPRVPPPPMPGSLPPPPSV 279
            PPP P  +G    GAPP P PPP    APPPPPPPP   GAPP  PPPPM G  PPPP  
Sbjct: 1046 PPPPPPMHG----GAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPP 1105

Query: 280  MANGPPRPMPP----GGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQ 339
               G  +P PP    GGAPP PPPPP+         P  +   PP PPPP      G   
Sbjct: 1106 PMFGGAQPPPPPPMRGGAPP-PPPPPMRGGAPPPPPPPMRGGAPPPPPPPM----HGGAP 1165

Query: 340  PPPPPPNMG 342
            PPPPPP  G
Sbjct: 1166 PPPPPPMRG 1165

The following BLAST results are available for this feature:

BLAST of Cmc04g0117731 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137848.1	2.9e-182	99.41	splicing factor 3A subunit 2 [Cucumis sativus] >KGN59007.1 hypothetical protein ...	[more]
XP_008442733.1	4.9e-182	99.71	PREDICTED: splicing factor 3A subunit 2 [Cucumis melo] >TYK25169.1 splicing fact...	[more]
XP_038905938.1	5.4e-181	99.12	splicing factor 3A subunit 2 [Benincasa hispida]	[more]
KAA0043971.1	3.9e-179	96.86	splicing factor 3A subunit 2 [Cucumis melo var. makuwa]	[more]
XP_023005145.1	1.1e-173	96.48	splicing factor 3A subunit 2 [Cucurbita maxima]	[more]

BLAST of Cmc04g0117731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15428	1.2e-79	56.59	Splicing factor 3A subunit 2 OS=Homo sapiens OX=9606 GN=SF3A2 PE=1 SV=2	[more]
A5PJN8	8.1e-79	56.55	Splicing factor 3A subunit 2 OS=Bos taurus OX=9913 GN=SF3A2 PE=2 SV=1	[more]
Q6AXT8	8.9e-78	57.88	Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1	[more]
Q62203	9.6e-72	55.15	Splicing factor 3A subunit 2 OS=Mus musculus OX=10090 GN=Sf3a2 PE=1 SV=2	[more]
Q54B65	6.0e-66	61.21	Splicing factor 3A subunit 2 OS=Dictyostelium discoideum OX=44689 GN=sf3a2 PE=3 ...	[more]

BLAST of Cmc04g0117731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEB1	1.4e-182	99.41	Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743440...	[more]
A0A5D3DPC7	2.4e-182	99.71	Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3B729	2.4e-182	99.71	splicing factor 3A subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486522 PE=3 SV=1	[more]
A0A5A7TQW8	1.9e-179	96.86	Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1KWM2	5.3e-174	96.48	splicing factor 3A subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111498269 PE=3 SV...	[more]

BLAST of Cmc04g0117731 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32600.1	2.2e-116	78.89	hydroxyproline-rich glycoprotein family protein	[more]
AT5G07740.1	1.6e-05	50.39	actin binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 215..236 score: 30.91 coord: 255..272 score: 33.33 coord: 277..302 score: 27.69 coord: 236..252 score: 50.59
None	No IPR available	SMART	SM01050	CactinC_cactus_3	coord: 89..216 e-value: 6.7E-19 score: 78.8
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 46..89 e-value: 3.3E-5 score: 25.4
None	No IPR available	PFAM	PF12874	zf-met	coord: 52..76 e-value: 1.9E-6 score: 28.0
None	No IPR available	GENE3D	2.60.40.2690		coord: 93..219 e-value: 1.7E-38 score: 133.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR23205	SPLICING FACTOR 3A SUBUNIT 2	coord: 1..335
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 49..83 e-value: 9.0E-8 score: 41.8
IPR031781	SF3A2 domain	PFAM	PF16835	SF3A2	coord: 110..204 e-value: 7.7E-35 score: 119.1
IPR000690	Matrin/U1-C, C2H2-type zinc finger	PROSITE	PS50171	ZF_MATRIN	coord: 52..82 score: 9.295713
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 48..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0117731.1	Cmc04g0117731.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000245	spliceosomal complex assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding