Cmc04g0115881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0115881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	CMiso1.1chr04: 33699425 .. 33701512 (+)
RNA-Seq Expression	Cmc04g0115881
Synteny	Cmc04g0115881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGTTGGGGCCCTTCTCCCTTTAAGCTTATAAATGTACATCTGAAAGAATCATGGTTCAAAAAAAATGTCACATATTGGTGGAAAAATTTGAGACAGGAGGGGCACCCAGGCTTTTCTTTTATGAGAAAGCTAAAGCAACTATCTGCCATTATAAGAAATGAGCAAAGAAAGAACAAATGCTACAGTGATGAAGATAAAAATGCTTGGATAAAAGAAATCGACAACATAGACAGATTAGAAGCTGAAGGAAACTTATCTGAAGAGCTTAGCCTCCGTAGGACTAGATTAAAAGCTGATGTCCTTATGTCCGGTTTCAAAGAAGCTCAAATATGGTACCAAAAAAGCAAGAGATTGTGGATCACTGAAGGAGATGAAAATACATCTTTCTTTCACAAAATCTGCTCTGCCAGACAAAGAAGAAGCATTATATCAAATATTAACTTCGTCGATGGTGTTCCTTGTTCAACAAATGAGAGCATTGCAAAAGCCTTCTTAGATCACTTTGAAGATATTTACAAAGGGGGTGGAGAGGAAAGCCCTTGGCTTATTGATAATCTTAGTTGGTGTCCTATATCAACCACCCAAGCACAAAATTTATGTTCTTTGTTCACGGAGGAGGAAATTCATGCAGCCCTTACTGCTTTCTCAAACAATAAAAGCCCGGGTCCAGATGGCTTTACCATGGAATTCTATAAATCAACTTGGTCTGACCTCAAGGAAGAAATTCTCAACATATTCAGAGACTTCCACTCAAACTGTATCATTAACAAAGCAGTAAACATCACAAATATTGCTCTAATTGCCAAAAAGGAAAAGTGTGCGGAGCCTGCGGATTACAGACCTATAAGTTTAACGACCTCCATTTACAAACTTATTGCCAAAGTCATTGCGGAAAGACTAAAAGAAACTCTTCCATCCACAGTGGCAGAGAACCAAATGGCCTTTGTAAAAGGCAGACAAATCATAGATGCTATCTTAGTTGCAAATGAAGCCATCGACTATTGGAGAGTTAAAAAAATTCAAGGCTTTGTTATAAAGCTGGATATTGAAAAAGCATTTGACAAACTAAACTGGAGATTCATTGATTTCATGCTTATGAAAAAGGGGTACCCCTTCAGATGGAGGAGGTGGATAAGAGCTTGTATTAGCAGTGTACAGTACTCTATTATCATCAACGGCAGACCTAGAGGCAAAATTCAACCTTCCCGTGGCATAAGGCAAGGAGACCCTATTTCCCCTTTTATTTTTGTCCTAGCAATGGATTATATAAGCAGGCTGCTGAACTCTGTGGGTGAAAAAATCAAAGGGGTGAAAATGGAGGGCAACATAAATCTGACACACTTACTCTTTGCAGATGATATTCTGCTTTTTGTAGAAGATGATGAGCACTCAATTCAAAATTTAAAGAATATCATCAACCTCTTCCAGCTTGCTTCGGGGCTGAGTATCAATCTAAATAAATCCACCATTTCTCCTATAAATGTTGACGCTGCAAGAACTGAACAGATAGCTTCACAATGGGGAATTTCTACAAAATTTCTTCCAATCAACTACCTTGGAGTTCCTCTCGGAGGTAAACAAATCACAAAGACTTTTTGGAAGAACGTTGAAGAAAAGATAAACAAAAAACTTGCCAGCTGGAAATATTCTATGTTATCTAAAGGAGGTAAAATTACTCTGATTAAATCTTCTTTGGCTAGCCTTCCTACTTATCAGCTATCAATCTTCAAAGCCCCTGTATCAACCTGCAAAAACATTGAAAAAACCTGGAGAAATTTCTTATGGAAGAACCCACCAGAGACCCATAAACTACACCTAGTTAATTGGGCGAAGATTACTTCTCCAAAAGAGAGAGGAGGGCTGGGCATAAGTCGACTGAAAGACACAAACTTTGCTCTTCTAACAAAATGGCTCTGGAGATACATCCATGAAGATTCCCCCCTATGGAAGAAAATTATAAATGCAAAATATAGAAGCCTATCCAAAGGGGACATTCCTTGTGTTTGCAATCATAGCAGCAGCCGTTCCCCATGGTTTTCCATTTGCAAAGGCTTGGAGTGGTTTCAAAGACATGTTTCCTAG

mRNA sequence

ATGATCAGTTGGGGCCCTTCTCCCTTTAAGCTTATAAATGTACATCTGAAAGAATCATGGTTCAAAAAAAATGTCACATATTGGTGGAAAAATTTGAGACAGGAGGGGCACCCAGGCTTTTCTTTTATGAGAAAGCTAAAGCAACTATCTGCCATTATAAGAAATGAGCAAAGAAAGAACAAATGCTACAGTGATGAAGATAAAAATGCTTGGATAAAAGAAATCGACAACATAGACAGATTAGAAGCTGAAGGAAACTTATCTGAAGAGCTTAGCCTCCGTAGGACTAGATTAAAAGCTGATGTCCTTATGTCCGGTTTCAAAGAAGCTCAAATATGGTACCAAAAAAGCAAGAGATTGTGGATCACTGAAGGAGATGAAAATACATCTTTCTTTCACAAAATCTGCTCTGCCAGACAAAGAAGAAGCATTATATCAAATATTAACTTCGTCGATGGTGTTCCTTGTTCAACAAATGAGAGCATTGCAAAAGCCTTCTTAGATCACTTTGAAGATATTTACAAAGGGGGTGGAGAGGAAAGCCCTTGGCTTATTGATAATCTTAGTTGGTGTCCTATATCAACCACCCAAGCACAAAATTTATGTTCTTTGTTCACGGAGGAGGAAATTCATGCAGCCCTTACTGCTTTCTCAAACAATAAAAGCCCGGGTCCAGATGGCTTTACCATGGAATTCTATAAATCAACTTGGTCTGACCTCAAGGAAGAAATTCTCAACATATTCAGAGACTTCCACTCAAACTGTATCATTAACAAAGCAGTAAACATCACAAATATTGCTCTAATTGCCAAAAAGGAAAAGTGTGCGGAGCCTGCGGATTACAGACCTATAAGTTTAACGACCTCCATTTACAAACTTATTGCCAAAGTCATTGCGGAAAGACTAAAAGAAACTCTTCCATCCACAGTGGCAGAGAACCAAATGGCCTTTGTAAAAGGCAGACAAATCATAGATGCTATCTTAGTTGCAAATGAAGCCATCGACTATTGGAGAGTTAAAAAAATTCAAGGCTTTGTTATAAAGCTGGATATTGAAAAAGCATTTGACAAACTAAACTGGAGATTCATTGATTTCATGCTTATGAAAAAGGGGTACCCCTTCAGATGGAGGAGGTGGATAAGAGCTTGTATTAGCAGTGTACAGTACTCTATTATCATCAACGGCAGACCTAGAGGCAAAATTCAACCTTCCCGTGGCATAAGGCAAGGAGACCCTATTTCCCCTTTTATTTTTGTCCTAGCAATGGATTATATAAGCAGGCTGCTGAACTCTGTGGGTGAAAAAATCAAAGGGGTGAAAATGGAGGGCAACATAAATCTGACACACTTACTCTTTGCAGATGATATTCTGCTTTTTGTAGAAGATGATGAGCACTCAATTCAAAATTTAAAGAATATCATCAACCTCTTCCAGCTTGCTTCGGGGCTGAGTATCAATCTAAATAAATCCACCATTTCTCCTATAAATGTTGACGCTGCAAGAACTGAACAGATAGCTTCACAATGGGGAATTTCTACAAAATTTCTTCCAATCAACTACCTTGGAGTTCCTCTCGGAGGTAAACAAATCACAAAGACTTTTTGGAAGAACGTTGAAGAAAAGATAAACAAAAAACTTGCCAGCTGGAAATATTCTATGTTATCTAAAGGAGGTAAAATTACTCTGATTAAATCTTCTTTGGCTAGCCTTCCTACTTATCAGCTATCAATCTTCAAAGCCCCTGTATCAACCTGCAAAAACATTGAAAAAACCTGGAGAAATTTCTTATGGAAGAACCCACCAGAGACCCATAAACTACACCTAGTTAATTGGGCGAAGATTACTTCTCCAAAAGAGAGAGGAGGGCTGGGCATAAGTCGACTGAAAGACACAAACTTTGCTCTTCTAACAAAATGGCTCTGGAGATACATCCATGAAGATTCCCCCCTATGGAAGAAAATTATAAATGCAAAATATAGAAGCCTATCCAAAGGGGACATTCCTTGTGTTTGCAATCATAGCAGCAGCCGTTCCCCATGGTTTTCCATTTGCAAAGGCTTGGAGTGGTTTCAAAGACATGTTTCCTAG

Coding sequence (CDS)

ATGATCAGTTGGGGCCCTTCTCCCTTTAAGCTTATAAATGTACATCTGAAAGAATCATGGTTCAAAAAAAATGTCACATATTGGTGGAAAAATTTGAGACAGGAGGGGCACCCAGGCTTTTCTTTTATGAGAAAGCTAAAGCAACTATCTGCCATTATAAGAAATGAGCAAAGAAAGAACAAATGCTACAGTGATGAAGATAAAAATGCTTGGATAAAAGAAATCGACAACATAGACAGATTAGAAGCTGAAGGAAACTTATCTGAAGAGCTTAGCCTCCGTAGGACTAGATTAAAAGCTGATGTCCTTATGTCCGGTTTCAAAGAAGCTCAAATATGGTACCAAAAAAGCAAGAGATTGTGGATCACTGAAGGAGATGAAAATACATCTTTCTTTCACAAAATCTGCTCTGCCAGACAAAGAAGAAGCATTATATCAAATATTAACTTCGTCGATGGTGTTCCTTGTTCAACAAATGAGAGCATTGCAAAAGCCTTCTTAGATCACTTTGAAGATATTTACAAAGGGGGTGGAGAGGAAAGCCCTTGGCTTATTGATAATCTTAGTTGGTGTCCTATATCAACCACCCAAGCACAAAATTTATGTTCTTTGTTCACGGAGGAGGAAATTCATGCAGCCCTTACTGCTTTCTCAAACAATAAAAGCCCGGGTCCAGATGGCTTTACCATGGAATTCTATAAATCAACTTGGTCTGACCTCAAGGAAGAAATTCTCAACATATTCAGAGACTTCCACTCAAACTGTATCATTAACAAAGCAGTAAACATCACAAATATTGCTCTAATTGCCAAAAAGGAAAAGTGTGCGGAGCCTGCGGATTACAGACCTATAAGTTTAACGACCTCCATTTACAAACTTATTGCCAAAGTCATTGCGGAAAGACTAAAAGAAACTCTTCCATCCACAGTGGCAGAGAACCAAATGGCCTTTGTAAAAGGCAGACAAATCATAGATGCTATCTTAGTTGCAAATGAAGCCATCGACTATTGGAGAGTTAAAAAAATTCAAGGCTTTGTTATAAAGCTGGATATTGAAAAAGCATTTGACAAACTAAACTGGAGATTCATTGATTTCATGCTTATGAAAAAGGGGTACCCCTTCAGATGGAGGAGGTGGATAAGAGCTTGTATTAGCAGTGTACAGTACTCTATTATCATCAACGGCAGACCTAGAGGCAAAATTCAACCTTCCCGTGGCATAAGGCAAGGAGACCCTATTTCCCCTTTTATTTTTGTCCTAGCAATGGATTATATAAGCAGGCTGCTGAACTCTGTGGGTGAAAAAATCAAAGGGGTGAAAATGGAGGGCAACATAAATCTGACACACTTACTCTTTGCAGATGATATTCTGCTTTTTGTAGAAGATGATGAGCACTCAATTCAAAATTTAAAGAATATCATCAACCTCTTCCAGCTTGCTTCGGGGCTGAGTATCAATCTAAATAAATCCACCATTTCTCCTATAAATGTTGACGCTGCAAGAACTGAACAGATAGCTTCACAATGGGGAATTTCTACAAAATTTCTTCCAATCAACTACCTTGGAGTTCCTCTCGGAGGTAAACAAATCACAAAGACTTTTTGGAAGAACGTTGAAGAAAAGATAAACAAAAAACTTGCCAGCTGGAAATATTCTATGTTATCTAAAGGAGGTAAAATTACTCTGATTAAATCTTCTTTGGCTAGCCTTCCTACTTATCAGCTATCAATCTTCAAAGCCCCTGTATCAACCTGCAAAAACATTGAAAAAACCTGGAGAAATTTCTTATGGAAGAACCCACCAGAGACCCATAAACTACACCTAGTTAATTGGGCGAAGATTACTTCTCCAAAAGAGAGAGGAGGGCTGGGCATAAGTCGACTGAAAGACACAAACTTTGCTCTTCTAACAAAATGGCTCTGGAGATACATCCATGAAGATTCCCCCCTATGGAAGAAAATTATAAATGCAAAATATAGAAGCCTATCCAAAGGGGACATTCCTTGTGTTTGCAATCATAGCAGCAGCCGTTCCCCATGGTTTTCCATTTGCAAAGGCTTGGAGTGGTTTCAAAGACATGTTTCCTAG

Protein sequence

MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRLWITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEESPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS

Homology

[Close]

BLAST of Cmc04g0115881 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 1384.8 bits (3583), Expect = 0.0e+00
Identity = 673/695 (96.83%), Postives = 683/695 (98.27%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           +ISWGPSPFKLINVHLKE WFK NVT WWKNLRQEGHPGFSFMRKLKQLS IIRNEQRKN
Sbjct: 74  LISWGPSPFKLINVHLKEPWFKNNVTNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKN 133

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCYSDEDKNAWIKEID+IDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL
Sbjct: 134 KCYSDEDKNAWIKEIDSIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 193

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN VDGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 194 WITEGDENTSFFHKICSARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 253

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNL+W PIST QAQNLCS+FTEEEIH ALTAFSNNKSPGPDGFTMEFYKSTWS L
Sbjct: 254 SPWLIDNLNWSPISTNQAQNLCSMFTEEEIHEALTAFSNNKSPGPDGFTMEFYKSTWSVL 313

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
           KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE
Sbjct: 314 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 373

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
           RLK+TLP TVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW
Sbjct: 374 RLKDTLPYTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 433

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPF+WR WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 434 RFIDFMLMKKGYPFKWRNWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 493

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDY+SRLLNSVGEKIKGVK+EGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 494 AMDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 553

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINVDA+RTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE
Sbjct: 554 SGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 613

Query: 541 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 600
           KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP
Sbjct: 614 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 673

Query: 601 PETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 660
           PETHKLHLVNWAKITS KE+GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR
Sbjct: 674 PETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 733

Query: 661 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS
Sbjct: 734 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 768

[Close]

BLAST of Cmc04g0115881 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 1383.2 bits (3579), Expect = 0.0e+00
Identity = 672/695 (96.69%), Postives = 682/695 (98.13%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           +ISWGPSPFKLINVHLKE WFK NVT WWKNLRQEGHPGFSFMRKLKQLS IIRNEQRKN
Sbjct: 74  LISWGPSPFKLINVHLKEPWFKNNVTNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKN 133

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCYSDEDKNAWIKEID+IDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL
Sbjct: 134 KCYSDEDKNAWIKEIDSIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 193

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN VDGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 194 WITEGDENTSFFHKICSARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 253

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNL+W PIST QAQNLCS+FTEEEIH ALTAFSNNKSPGPDGFTMEFYKSTWS L
Sbjct: 254 SPWLIDNLNWSPISTNQAQNLCSMFTEEEIHEALTAFSNNKSPGPDGFTMEFYKSTWSVL 313

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
           KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE
Sbjct: 314 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 373

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
           RLK+TLP TVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW
Sbjct: 374 RLKDTLPYTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 433

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPF+WR WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 434 RFIDFMLMKKGYPFKWRNWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 493

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDY+SRLLNSVGEKIKGVK+EGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 494 AMDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 553

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINVDA+RTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE
Sbjct: 554 SGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 613

Query: 541 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 600
           KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFK PVSTCKNIEKTWRNFLWKNP
Sbjct: 614 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNP 673

Query: 601 PETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 660
           PETHKLHLVNWAKITS KE+GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR
Sbjct: 674 PETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 733

Query: 661 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS
Sbjct: 734 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 768

[Close]

BLAST of Cmc04g0115881 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 1277.7 bits (3305), Expect = 0.0e+00
Identity = 629/695 (90.50%), Postives = 643/695 (92.52%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           +ISWGPSPFKLINVHLKE WFK N+T WWKNLRQEGHPGFSFMRKLKQLS IIRNEQRKN
Sbjct: 164 LISWGPSPFKLINVHLKEPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKN 223

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCYSDEDKNAWIKEID+IDRLEAEGNLSEELSLRRTRLKADVL SGFKEAQIWYQKSKRL
Sbjct: 224 KCYSDEDKNAWIKEIDSIDRLEAEGNLSEELSLRRTRLKADVLTSGFKEAQIWYQKSKRL 283

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN  DGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 284 WITEGDENTSFFHKICSARQRRSIISNINSADGVPCSTNESIAKAFLDHFEDIYKGGGEE 343

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNL+W PIST QAQ LCS+FTEEEIH ALTAFS+NKSP                 
Sbjct: 344 SPWLIDNLNWSPISTNQAQILCSMFTEEEIHEALTAFSSNKSPET--------------- 403

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
                       S   ++  +NITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE
Sbjct: 404 ------------STQTVSSTINITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 463

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
           RLK+TLP TVAENQMAFVK RQIIDAILVANEAIDYWR KKIQGFVIKLDIEKAFDKLNW
Sbjct: 464 RLKDTLPYTVAENQMAFVKDRQIIDAILVANEAIDYWRFKKIQGFVIKLDIEKAFDKLNW 523

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPF+WR WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 524 RFIDFMLMKKGYPFKWRSWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 583

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDYISRLLNSVGEKIKGVK+EGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 584 AMDYISRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 643

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINVDA+RTEQIASQWGISTKFLPINYLGVPLGGKQ TK FWKNVEE
Sbjct: 644 SGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEE 703

Query: 541 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 600
           KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP
Sbjct: 704 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 763

Query: 601 PETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 660
           PETHKLHLVNWAKITS KE+GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR
Sbjct: 764 PETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 823

Query: 661 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS
Sbjct: 824 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 831

[Close]

BLAST of Cmc04g0115881 vs. NCBI nr
Match: KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 1198.0 bits (3098), Expect = 0.0e+00
Identity = 584/592 (98.65%), Postives = 586/592 (98.99%), Query Frame = 0


Query: 104 MSGFKEAQIWYQKSKRLWITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIA 163
           MSGFKEAQIWYQKSKRLWITEGDENTSFFHKIC+ARQRRSIISNI  VDGVPCSTNESIA
Sbjct: 1   MSGFKEAQIWYQKSKRLWITEGDENTSFFHKICTARQRRSIISNIKSVDGVPCSTNESIA 60

Query: 164 KAFLDHFEDIYKGGGEESPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSP 223
           KAFLDHFEDIYKGGGEESPWLIDNLSW PISTTQAQNLCS FTEEEIHAALTAFSNNKSP
Sbjct: 61  KAFLDHFEDIYKGGGEESPWLIDNLSWSPISTTQAQNLCSCFTEEEIHAALTAFSNNKSP 120

Query: 224 GPDGFTMEFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRP 283
           GPDGFTMEFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRP
Sbjct: 121 GPDGFTMEFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRP 180

Query: 284 ISLTTSIYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQ 343
           ISLTTSIYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQ
Sbjct: 181 ISLTTSIYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQ 240

Query: 344 GFVIKLDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQP 403
           GFVIKLDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQP
Sbjct: 241 GFVIKLDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQP 300

Query: 404 SRGIRQGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDD 463
           SRGIRQGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDD
Sbjct: 301 SRGIRQGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDD 360

Query: 464 EHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGV 523
           EHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGV
Sbjct: 361 EHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGV 420

Query: 524 PLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVS 583
           PLGGKQ TKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVS
Sbjct: 421 PLGGKQTTKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVS 480

Query: 584 TCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRY 643
            CKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRY
Sbjct: 481 ACKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRY 540

Query: 644 IHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           IHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKG+EWFQRHVS
Sbjct: 541 IHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKGVEWFQRHVS 592

[Close]

BLAST of Cmc04g0115881 vs. NCBI nr
Match: TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 1029.2 bits (2660), Expect = 1.6e-296
Identity = 509/557 (91.38%), Postives = 519/557 (93.18%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           MISWGPSPFK INVHLKE WFKKNVT WWKNLRQ GHPGFSFM+KLKQLSAIIR+EQ+KN
Sbjct: 164 MISWGPSPFKFINVHLKEPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKN 223

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCY+DE+K AWIKEIDNIDRLEAEGN SEELSLRRT+LKADVLMSGFKEAQIWYQKSKRL
Sbjct: 224 KCYNDEEKKAWIKEIDNIDRLEAEGNFSEELSLRRTKLKADVLMSGFKEAQIWYQKSKRL 283

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN VDGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 284 WITEGDENTSFFHKICSARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 343

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNLSW PISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWS L
Sbjct: 344 SPWLIDNLSWSPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSVL 403

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
           KEEI NIFRDFHSNCIINKAVN+TNIALIAKKEKCAEPADYRPI                
Sbjct: 404 KEEIFNIFRDFHSNCIINKAVNMTNIALIAKKEKCAEPADYRPI---------------- 463

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
                    +AENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW
Sbjct: 464 ---------MAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 523

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPFRWR+WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 524 RFIDFMLMKKGYPFRWRKWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 583

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 584 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 643

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINV AARTEQIASQWGISTKFLPINYLGVPLGGKQ TK+FWKNVEE
Sbjct: 644 SGLSINLNKSTISPINVGAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKSFWKNVEE 695

Query: 541 KINKKLASWKYSMLSKG 558
           KINKKL SWKYSMLSKG
Sbjct: 704 KINKKLTSWKYSMLSKG 695

[Close]

BLAST of Cmc04g0115881 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.1e-45
Identity = 167/669 (24.96%), Postives = 311/669 (46.49%), Query Frame = 0


Query: 9   FKLINVHLKESW----FKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYS 68
           +KL N+ LK++W     KK +T   K L Q  +   ++        A++R +    + + 
Sbjct: 249 WKLNNLMLKDTWVIDEIKKEIT---KFLEQNNNQDTNYQNLWDTAKAVLRGKFIALQAFL 308

Query: 69  DEDKNAWIKEI-DNIDRLEAEGNLSEELSLRR--TRLKADVLMSGFKEAQIWYQKSKRLW 128
            + +   +  +  ++ +LE E + + + S R+  T+++A++     K       KSK  +
Sbjct: 309 KKTEREEVNNLMGHLKQLEKEEHSNPKPSRRKEITKIRAELNEIENKRIIQQINKSKSWF 368

Query: 129 ITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEES 188
             + ++       +   ++ +S+IS+I   +    +    I K   ++++ +Y    E  
Sbjct: 369 FEKINKIDKPLANLTRKKRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENL 428

Query: 189 PWLIDNLSWC---PISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWS 248
             +   L  C    +S  + + L    +  EI + +      KSPGPDGFT EFY++   
Sbjct: 429 KEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKE 488

Query: 249 DLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEK-CAEPADYRPISLTTSIYKLIAKV 308
           +L   +LN+F++     I+       NI LI K  K      +YRPISL     K++ K+
Sbjct: 489 ELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKI 548

Query: 309 IAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYW-RVKKIQGFVIKLDIEKAFD 368
           +  R+++ +   +  +Q+ F+ G Q    I  +   I +  ++K     ++ +D EKAFD
Sbjct: 549 LTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDHMILSIDAEKAFD 608

Query: 369 KLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPF 428
            +   F+   L K G    + + I A  S    +II+NG          G RQG P+SP 
Sbjct: 609 NIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPL 668

Query: 429 IFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINL 488
           +F + M+ ++  +    + IKG+ + G+  +   LFADD+++++E+   S   L  +I  
Sbjct: 669 LFNIVMEVLAIAIRE-EKAIKGIHI-GSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKE 728

Query: 489 FQLASGLSINLNKST--ISPINVDAARTEQIASQWGISTKFLPINYLGVPL--GGKQITK 548
           +   SG  IN +KS   I   N  A +T + +  + +  K   + YLGV L    K + K
Sbjct: 729 YSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPK--KMKYLGVYLTKDVKDLYK 788

Query: 549 TFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSI--FKAPVSTCKNIEK 608
             ++ + ++I + +  WK    S  G+I ++K S+     Y  +    KAP+S  K++EK
Sbjct: 789 ENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEK 848

Query: 609 TWRNFLW-KNPPETHKLHLVNWAKITSPKERGGLGIS--RLKDTNFALLTKWLWRYIHED 657
              +F+W +  P+  K  L N        + GG+ +   RL   +  + T W W + + +
Sbjct: 849 IILHFIWNQKKPQIAKTLLSN------KNKAGGITLPDLRLYYKSIVIKTAWYW-HKNRE 903

[Close]

BLAST of Cmc04g0115881 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-44
Identity = 151/611 (24.71%), Postives = 281/611 (45.99%), Query Frame = 0


Query: 57  QRKNKCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLK---ADVLMSGFKEAQIW 116
           +RK +    +   + +KE++  ++  ++ +  +E++  R  LK       +    E++ W
Sbjct: 306 KRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSW 365

Query: 117 YQKSKRLWITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDI 176
           + +     I + D   +   ++   ++ ++ I  I    G   +    I     ++++ +
Sbjct: 366 FFER----INKIDRPLA---RLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHL 425

Query: 177 YKG---GGEESPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTM 236
           Y       EE    +D  +   ++  + ++L    T  EI A + +    KSPGPDGFT 
Sbjct: 426 YANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTA 485

Query: 237 EFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEK-CAEPADYRPISLTTS 296
           EFY+    +L   +L +F+      I+  +    +I LI K  +   +  ++RPISL   
Sbjct: 486 EFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNI 545

Query: 297 IYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYW-RVKKIQGFVIK 356
             K++ K++A R+++ +   +  +Q+ F+ G Q    I  +   I +  R K     +I 
Sbjct: 546 DAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIIS 605

Query: 357 LDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIR 416
           +D EKAFDK+   F+   L K G    + + IRA       +II+NG+         G R
Sbjct: 606 IDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTR 665

Query: 417 QGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQ 476
           QG P+SP +F + ++ ++R +    E IKG+++ G   +   LFADD+++++E+   S Q
Sbjct: 666 QGCPLSPLLFNIVLEVLARAIRQEKE-IKGIQL-GKEEVKLSLFADDMIVYLENPIVSAQ 725

Query: 477 NLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPL--G 536
           NL  +I+ F   SG  IN+ KS     N +     QI  +   +     I YLG+ L   
Sbjct: 726 NLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRD 785

Query: 537 GKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSI--FKAPVST 596
            K + K  +K + ++I +    WK    S  G+I ++K ++     Y+ +    K P++ 
Sbjct: 786 VKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTF 845

Query: 597 CKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTK--WLWR 654
              +EKT   F+W       K   +  + ++   + GG+ +   K    A +TK  W W 
Sbjct: 846 FTELEKTTLKFIW-----NQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYW- 901

[Close]

BLAST of Cmc04g0115881 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-41
Identity = 139/532 (26.13%), Postives = 243/532 (45.68%), Query Frame = 0


Query: 134 KICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGE---ESPWLIDNLSW 193
           ++    + + +I+ I    G   +  E I       ++ +Y    E   E    +D    
Sbjct: 386 RLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQV 445

Query: 194 CPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDLKEEILNIFRD 253
             ++  Q  +L S  + +EI A + +    KSPGPDGF+ EFY++   DL   +  +F  
Sbjct: 446 PKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHK 505

Query: 254 FHSNCIINKAVNITNIALIAKKEK-CAEPADYRPISLTTSIYKLIAKVIAERLKETLPST 313
                 +  +     I LI K +K   +  ++RPISL     K++ K++A R++E + + 
Sbjct: 506 IEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAI 565

Query: 314 VAENQMAFVKGRQIIDAILVANEAIDYW-RVKKIQGFVIKLDIEKAFDKLNWRFIDFMLM 373
           +  +Q+ F+ G Q    I  +   I Y  ++K     +I LD EKAFDK+   F+  +L 
Sbjct: 566 IHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLE 625

Query: 374 KKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVLAMDYISRL 433
           + G    +   I+A  S    +I +NG     I    G RQG P+SP++F + ++ ++R 
Sbjct: 626 RSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARA 685

Query: 434 LNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLN 493
           +    E IKG+++ G   +   L ADD+++++ D ++S + L N+IN F    G  IN N
Sbjct: 686 IRQQKE-IKGIQI-GKEEVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSN 745

Query: 494 KSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGG--KQITKTFWKNVEEKINKKL 553
           KS       +    ++I      S     I YLGV L    K +    +K+++++I + L
Sbjct: 746 KSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDL 805

Query: 554 ASWKYSMLSKGGKITLIKSSLASLPTYQLSI--FKAPVSTCKNIEKTWRNFLWKNPPETH 613
             WK    S  G+I ++K ++     Y+ +    K P      +E     F+W N     
Sbjct: 806 RRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNN----- 865

Query: 614 KLHLVNWAKITSPKERGGLGISRLKDTNFALL--TKWLWRYIHEDSPLWKKI 655
           K   +  + +   +  GG+ +  LK    A++  T W W Y       W +I
Sbjct: 866 KKPRIAKSLLKDKRTSGGITMPDLKLYYRAIVIKTAWYW-YRDRQVDQWNRI 909

[Close]

BLAST of Cmc04g0115881 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-36
Identity = 145/609 (23.81%), Postives = 285/609 (46.80%), Query Frame = 0


Query: 68  KNAWIKEIDNIDRLEAEGNL--SEELSLRRTRLKADVLMSGFKEAQI--WYQKSKRLWIT 127
           +NA I+ + N + L+ E  L  SE+ +L+   L+    +   ++ Q    + +S+   + 
Sbjct: 308 RNAEIEAL-NGEVLDLEQRLSGSEDQALQCEYLERKEALRNMEQRQARGAFVRSRMQLLC 367

Query: 128 EGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKG---GGEE 187
           + D  + FF+ +   +  R  I+ +   DG P    E+I       +++++       + 
Sbjct: 368 DMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDA 427

Query: 188 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 247
              L D L    +S  + + L +  T +E+  AL    +NKSPG DG T+EF++  W  L
Sbjct: 428 CEELWDGLP--VVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTL 487

Query: 248 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 307
             +   +  +      +  +     ++L+ KK       ++RP+SL ++ YK++AK I+ 
Sbjct: 488 GPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISL 547

Query: 308 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 367
           RLK  L   +  +Q   V GR I D + +  + + + R   +    + LD EKAFD+++ 
Sbjct: 548 RLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDH 607

Query: 368 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 427
           +++   L    +  ++  +++   +S +  + IN      +   RG+RQG P+S  ++ L
Sbjct: 608 QYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSL 667

Query: 428 AMDYISRLLNSVGEKIKG-VKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQL 487
           A++    LL    +++ G V  E ++ +    +ADD++L V  D   ++  +    ++  
Sbjct: 668 AIEPFLCLLR---KRLTGLVLKEPDMRVVLSAYADDVIL-VAQDLVDLERAQECQEVYAA 727

Query: 488 ASGLSINLNKSTISPINVDAARTEQIASQW-GISTKFLPINYLGVPLGGKQ--ITKTFWK 547
           AS   IN +KS  S +   + + + +   +  IS +   I YLGV L  ++  +++ F +
Sbjct: 728 ASSARINWSKS--SGLLEGSLKVDFLPPAFRDISWESKIIKYLGVYLSAEEYPVSQNFIE 787

Query: 548 NVEEKINKKLASWK--YSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRN 607
            +EE +  +L  WK    +LS  G+  +I   +AS   Y+L            I++   +
Sbjct: 788 -LEECVLTRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLSPTQEFIAKIQRRLLD 847

Query: 608 FLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHED-SPLWKK 663
           FLW         H V+    + P + GG G+  ++        + + RY++ D SP W  
Sbjct: 848 FLWIGK------HWVSAGVSSLPLKEGGQGVVCIRSQVHTFRLQQIQRYLYADPSPQWCT 900

[Close]

BLAST of Cmc04g0115881 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-23
Identity = 56/165 (33.94%), Postives = 90/165 (54.55%), Query Frame = 0


Query: 523 VPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPV 582
           +P+  K+I K  +  + E+++ +++ W+   LS  G++TL K+ L+S+P + +S    P 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 583 STCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWR 642
           S    +++  R FLW +  E  K HLV W+K+ SPK+ GGLG+   K  N AL++K  WR
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120

Query: 643 YIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKGL 688
            + E + LW  ++  KY      D   +    S  S W SI  GL
Sbjct: 121 LLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGL 165

[Close]

BLAST of Cmc04g0115881 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 1384.8 bits (3583), Expect = 0.0e+00
Identity = 673/695 (96.83%), Postives = 683/695 (98.27%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           +ISWGPSPFKLINVHLKE WFK NVT WWKNLRQEGHPGFSFMRKLKQLS IIRNEQRKN
Sbjct: 74  LISWGPSPFKLINVHLKEPWFKNNVTNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKN 133

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCYSDEDKNAWIKEID+IDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL
Sbjct: 134 KCYSDEDKNAWIKEIDSIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 193

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN VDGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 194 WITEGDENTSFFHKICSARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 253

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNL+W PIST QAQNLCS+FTEEEIH ALTAFSNNKSPGPDGFTMEFYKSTWS L
Sbjct: 254 SPWLIDNLNWSPISTNQAQNLCSMFTEEEIHEALTAFSNNKSPGPDGFTMEFYKSTWSVL 313

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
           KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE
Sbjct: 314 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 373

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
           RLK+TLP TVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW
Sbjct: 374 RLKDTLPYTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 433

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPF+WR WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 434 RFIDFMLMKKGYPFKWRNWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 493

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDY+SRLLNSVGEKIKGVK+EGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 494 AMDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 553

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINVDA+RTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE
Sbjct: 554 SGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 613

Query: 541 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 600
           KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP
Sbjct: 614 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 673

Query: 601 PETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 660
           PETHKLHLVNWAKITS KE+GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR
Sbjct: 674 PETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 733

Query: 661 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS
Sbjct: 734 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 768

[Close]

BLAST of Cmc04g0115881 vs. ExPASy TrEMBL
Match: A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)

HSP 1 Score: 1383.2 bits (3579), Expect = 0.0e+00
Identity = 672/695 (96.69%), Postives = 682/695 (98.13%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           +ISWGPSPFKLINVHLKE WFK NVT WWKNLRQEGHPGFSFMRKLKQLS IIRNEQRKN
Sbjct: 74  LISWGPSPFKLINVHLKEPWFKNNVTNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKN 133

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCYSDEDKNAWIKEID+IDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL
Sbjct: 134 KCYSDEDKNAWIKEIDSIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 193

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN VDGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 194 WITEGDENTSFFHKICSARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 253

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNL+W PIST QAQNLCS+FTEEEIH ALTAFSNNKSPGPDGFTMEFYKSTWS L
Sbjct: 254 SPWLIDNLNWSPISTNQAQNLCSMFTEEEIHEALTAFSNNKSPGPDGFTMEFYKSTWSVL 313

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
           KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE
Sbjct: 314 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 373

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
           RLK+TLP TVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW
Sbjct: 374 RLKDTLPYTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 433

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPF+WR WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 434 RFIDFMLMKKGYPFKWRNWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 493

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDY+SRLLNSVGEKIKGVK+EGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 494 AMDYMSRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 553

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINVDA+RTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE
Sbjct: 554 SGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 613

Query: 541 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 600
           KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFK PVSTCKNIEKTWRNFLWKNP
Sbjct: 614 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNP 673

Query: 601 PETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 660
           PETHKLHLVNWAKITS KE+GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR
Sbjct: 674 PETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 733

Query: 661 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS
Sbjct: 734 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 768

[Close]

BLAST of Cmc04g0115881 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 1277.7 bits (3305), Expect = 0.0e+00
Identity = 629/695 (90.50%), Postives = 643/695 (92.52%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           +ISWGPSPFKLINVHLKE WFK N+T WWKNLRQEGHPGFSFMRKLKQLS IIRNEQRKN
Sbjct: 164 LISWGPSPFKLINVHLKEPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKN 223

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCYSDEDKNAWIKEID+IDRLEAEGNLSEELSLRRTRLKADVL SGFKEAQIWYQKSKRL
Sbjct: 224 KCYSDEDKNAWIKEIDSIDRLEAEGNLSEELSLRRTRLKADVLTSGFKEAQIWYQKSKRL 283

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN  DGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 284 WITEGDENTSFFHKICSARQRRSIISNINSADGVPCSTNESIAKAFLDHFEDIYKGGGEE 343

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNL+W PIST QAQ LCS+FTEEEIH ALTAFS+NKSP                 
Sbjct: 344 SPWLIDNLNWSPISTNQAQILCSMFTEEEIHEALTAFSSNKSPET--------------- 403

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
                       S   ++  +NITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE
Sbjct: 404 ------------STQTVSSTINITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 463

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
           RLK+TLP TVAENQMAFVK RQIIDAILVANEAIDYWR KKIQGFVIKLDIEKAFDKLNW
Sbjct: 464 RLKDTLPYTVAENQMAFVKDRQIIDAILVANEAIDYWRFKKIQGFVIKLDIEKAFDKLNW 523

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPF+WR WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 524 RFIDFMLMKKGYPFKWRSWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 583

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDYISRLLNSVGEKIKGVK+EGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 584 AMDYISRLLNSVGEKIKGVKLEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 643

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINVDA+RTEQIASQWGISTKFLPINYLGVPLGGKQ TK FWKNVEE
Sbjct: 644 SGLSINLNKSTISPINVDASRTEQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEE 703

Query: 541 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 600
           KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP
Sbjct: 704 KINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNP 763

Query: 601 PETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 660
           PETHKLHLVNWAKITS KE+GGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR
Sbjct: 764 PETHKLHLVNWAKITSSKEKGGLGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYR 823

Query: 661 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS
Sbjct: 824 SLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 831

[Close]

BLAST of Cmc04g0115881 vs. ExPASy TrEMBL
Match: A0A5A7TI93 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00120 PE=4 SV=1)

HSP 1 Score: 1198.0 bits (3098), Expect = 0.0e+00
Identity = 584/592 (98.65%), Postives = 586/592 (98.99%), Query Frame = 0


Query: 104 MSGFKEAQIWYQKSKRLWITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIA 163
           MSGFKEAQIWYQKSKRLWITEGDENTSFFHKIC+ARQRRSIISNI  VDGVPCSTNESIA
Sbjct: 1   MSGFKEAQIWYQKSKRLWITEGDENTSFFHKICTARQRRSIISNIKSVDGVPCSTNESIA 60

Query: 164 KAFLDHFEDIYKGGGEESPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSP 223
           KAFLDHFEDIYKGGGEESPWLIDNLSW PISTTQAQNLCS FTEEEIHAALTAFSNNKSP
Sbjct: 61  KAFLDHFEDIYKGGGEESPWLIDNLSWSPISTTQAQNLCSCFTEEEIHAALTAFSNNKSP 120

Query: 224 GPDGFTMEFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRP 283
           GPDGFTMEFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRP
Sbjct: 121 GPDGFTMEFYKSTWSDLKEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRP 180

Query: 284 ISLTTSIYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQ 343
           ISLTTSIYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQ
Sbjct: 181 ISLTTSIYKLIAKVIAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQ 240

Query: 344 GFVIKLDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQP 403
           GFVIKLDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQP
Sbjct: 241 GFVIKLDIEKAFDKLNWRFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQP 300

Query: 404 SRGIRQGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDD 463
           SRGIRQGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDD
Sbjct: 301 SRGIRQGDPISPFIFVLAMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDD 360

Query: 464 EHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGV 523
           EHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGV
Sbjct: 361 EHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGV 420

Query: 524 PLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVS 583
           PLGGKQ TKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVS
Sbjct: 421 PLGGKQTTKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVS 480

Query: 584 TCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRY 643
            CKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRY
Sbjct: 481 ACKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFALLTKWLWRY 540

Query: 644 IHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVS 696
           IHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKG+EWFQRHVS
Sbjct: 541 IHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSICKGVEWFQRHVS 592

[Close]

BLAST of Cmc04g0115881 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 1029.2 bits (2660), Expect = 7.7e-297
Identity = 509/557 (91.38%), Postives = 519/557 (93.18%), Query Frame = 0


Query: 1   MISWGPSPFKLINVHLKESWFKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKN 60
           MISWGPSPFK INVHLKE WFKKNVT WWKNLRQ GHPGFSFM+KLKQLSAIIR+EQ+KN
Sbjct: 164 MISWGPSPFKFINVHLKEPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKN 223

Query: 61  KCYSDEDKNAWIKEIDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEAQIWYQKSKRL 120
           KCY+DE+K AWIKEIDNIDRLEAEGN SEELSLRRT+LKADVLMSGFKEAQIWYQKSKRL
Sbjct: 224 KCYNDEEKKAWIKEIDNIDRLEAEGNFSEELSLRRTKLKADVLMSGFKEAQIWYQKSKRL 283

Query: 121 WITEGDENTSFFHKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 180
           WITEGDENTSFFHKICSARQRRSIISNIN VDGVPCSTNESIAKAFLDHFEDIYKGGGEE
Sbjct: 284 WITEGDENTSFFHKICSARQRRSIISNINSVDGVPCSTNESIAKAFLDHFEDIYKGGGEE 343

Query: 181 SPWLIDNLSWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDL 240
           SPWLIDNLSW PISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWS L
Sbjct: 344 SPWLIDNLSWSPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSVL 403

Query: 241 KEEILNIFRDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLIAKVIAE 300
           KEEI NIFRDFHSNCIINKAVN+TNIALIAKKEKCAEPADYRPI                
Sbjct: 404 KEEIFNIFRDFHSNCIINKAVNMTNIALIAKKEKCAEPADYRPI---------------- 463

Query: 301 RLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 360
                    +AENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW
Sbjct: 464 ---------MAENQMAFVKGRQIIDAILVANEAIDYWRVKKIQGFVIKLDIEKAFDKLNW 523

Query: 361 RFIDFMLMKKGYPFRWRRWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 420
           RFIDFMLMKKGYPFRWR+WIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL
Sbjct: 524 RFIDFMLMKKGYPFRWRKWIRACISSVQYSIIINGRPRGKIQPSRGIRQGDPISPFIFVL 583

Query: 421 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 480
           AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA
Sbjct: 584 AMDYISRLLNSVGEKIKGVKMEGNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLA 643

Query: 481 SGLSINLNKSTISPINVDAARTEQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEE 540
           SGLSINLNKSTISPINV AARTEQIASQWGISTKFLPINYLGVPLGGKQ TK+FWKNVEE
Sbjct: 644 SGLSINLNKSTISPINVGAARTEQIASQWGISTKFLPINYLGVPLGGKQTTKSFWKNVEE 695

Query: 541 KINKKLASWKYSMLSKG 558
           KINKKL SWKYSMLSKG
Sbjct: 704 KINKKLTSWKYSMLSKG 695

[Close]

BLAST of Cmc04g0115881 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 97.4 bits (241), Expect = 4.7e-20
Identity = 57/169 (33.73%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 516 LPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITLIKSSLASLPTYQL 575
           LP+ YLG+PL  K++T + +  + EKI  ++  W    LS  G++ LI S + SL  + +
Sbjct: 23  LPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWM 82

Query: 576 SIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGLGISRLKDTNFAL 635
           S F+ P +  K I+    +FLW  P    K   V W+ + +PK+ GGLGI  LK+ N   
Sbjct: 83  SAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGS 142

Query: 636 LTKWLWRYIHE---DSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWF 682
                W         S +WKKI+  K+R+L+ G +    ++ S+ S WF
Sbjct: 143 ----FWSISGNTTLGSWMWKKIL--KHRALASGFVKHDIHNGSNTSFWF 185

[Close]

BLAST of Cmc04g0115881 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-20
Identity = 62/226 (27.43%), Postives = 112/226 (49.56%), Query Frame = 0


Query: 75  IDNIDRLEAEGNLSEELSLRRTRLKADVLMSGFKEA--QIWYQKSKRLWITEGDENTSFF 134
           +D+++ ++++   +   SL R    A    + F  A    + QKS+  W+ +GD NT FF
Sbjct: 395 LDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFF 454

Query: 135 HKICSARQRRSIISNINFVDGVPCSTNESIAKAFLDHFEDIYKGGGE----ESPWLIDNL 194
           HK+  A Q +++I  +   D V       + +  + ++  +     +    +S   I ++
Sbjct: 455 HKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDI 514

Query: 195 SWCPISTTQAQNLCSLFTEEEIHAALTAFSNNKSPGPDGFTMEFYKSTWSDLKEEILNIF 254
                + T A  L +L +++EI AA+ A   NK+PGPD FT EF+  +W  +K+  +   
Sbjct: 515 HPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAV 574

Query: 255 RDFHSNCIINKAVNITNIALIAKKEKCAEPADYRPISLTTSIYKLI 295
           ++F     + K  N T I LI K     + + +RP+S  T +YK+I
Sbjct: 575 KEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKII 620

[Close]

BLAST of Cmc04g0115881 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-11
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 392 IINGRPRGKIQPSRGIRQGDPISPFIFVLAMDYISRLLNSVGE--KIKGVKMEGNI-NLT 451
           IING P+G + PSRG+RQGDP+SP++F+L  + +S L     E  ++ G+++  N   + 
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 452 HLLFADD 456
           HLLFADD
Sbjct: 73  HLLFADD 79

[Close]

BLAST of Cmc04g0115881 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 56.6 bits (135), Expect = 9.2e-08
Identity = 28/81 (34.57%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 298 IAERLKETLPSTVAENQMAFVKGRQIIDAILVANEAIDYWRVKK-IQGF-VIKLDIEKAF 357
           + ERLK  + + +   Q +F+ GR   D I+   EA+   R KK ++G+ ++KLD+EKA+
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 358 DKLNWRFIDFMLMKKGYPFRW 377
           D++ W +++  L+  G+P  W
Sbjct: 61  DRIRWDYLEDTLISAGFPEVW 81

The following BLAST results are available for this feature:

BLAST of Cmc04g0115881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039770.1	0.0e+00	96.83	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247...	[more]
XP_016902461.1	0.0e+00	96.69	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
TYK06777.1	0.0e+00	90.50	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041367.1	0.0e+00	98.65	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK24536.1	1.6e-296	91.38	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0115881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08548	4.1e-45	24.96	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
O00370	2.7e-44	24.71	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P11369	1.6e-41	26.13	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
P14381	2.0e-36	23.81	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
P0C2F6	1.5e-23	33.94	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Cmc04g0115881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM72	0.0e+00	96.83	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4E2K5	0.0e+00	96.69	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A5D3C4J1	0.0e+00	90.50	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TI93	0.0e+00	98.65	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DLM2	7.7e-297	91.38	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Cmc04g0115881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	4.7e-20	33.73	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G43760.1	6.1e-20	27.43	DNAse I-like superfamily protein	[more]
ATMG01250.1	2.3e-11	46.27	RNA-directed DNA polymerase (reverse transcriptase)	[more]
AT4G20520.1	9.2e-08	34.57	RNA binding;RNA-directed DNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 17..651
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 17..651
None	No IPR available	CDD	cd01650	RT_nLTR_like	coord: 264..525 e-value: 1.3233E-57 score: 192.506
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 271..525 e-value: 8.4E-45 score: 153.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 250..525 score: 17.341705
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 205..495

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0115881.1	Cmc04g0115881.1	mRNA