Cmc04g0113831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0113831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr04: 32300906 .. 32301477 (+)
RNA-Seq Expression	Cmc04g0113831
Synteny	Cmc04g0113831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCAACACTATAAATTAACCATAAATAACAATAAACTAACTTATTCCTTCAACCGAAAAACTGCCCAATAATTCCCTCATTATTATTCTTACATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGTTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGAATTTGAATATATCAAACCTTTCGTGTTTTTGTTCTGACTTGTCGTTTCTCGATGTTTCATCTTGTCGTCTGTTGGTTATTGTGTATGATATGTCGAGTGCAAGTAAATATGTGATCACAATAATGACTCTTTGTGAGTCGAAGGCATGCATGCACTGTGATAACTATGACCTAAGTAAATAGTTAAATCAATAAAACTTACCTTTTTTTTCTCT

mRNA sequence

CTCCCAACACTATAAATTAACCATAAATAACAATAAACTAACTTATTCCTTCAACCGAAAAACTGCCCAATAATTCCCTCATTATTATTCTTACATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGTTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGAATTTGAATATATCAAACCTTTCGTGTTTTTGTTCTGACTTGTCGTTTCTCGATGTTTCATCTTGTCGTCTGTTGGTTATTGTGTATGATATGTCGAGTGCAAGTAAATATGTGATCACAATAATGACTCTTTGTGAGTCGAAGGCATGCATGCACTGTGATAACTATGACCTAAGTAAATAGTTAAATCAATAAAACTTACCTTTTTTTTCTCT

Coding sequence (CDS)

ATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGTTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGA

Protein sequence

MASPSKLFLCFCFFIFLIISSSLAAVQRPNGGGGGGGGGGSGSASSSGGGSASGSGSGSGSGSGGGSGFNGVSVDQASGLNHRKVSP

Homology

[Close]

BLAST of Cmc04g0113831 vs. NCBI nr
Match: KGN59380.1 (hypothetical protein Csa_000800 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 70/88 (79.55%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MASPSKLFLCFCFFIFLIISSSLAAVQRPN-GGGGGGGGGGSGSASSSGGGSASGSGSGS 60
          MAS SKLFLCFCFFIFLI SS+LAAVQRPN GGGGGGGGGGSGS SSSG GSASGSGSGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60

Query: 61 GSGSGGGSGFNGVSVDQASGLNHRKVSP 88
          GSG G G    G+S DQA G  HRK SP
Sbjct: 61 GSGGGSGDSV-GISSDQAGGSTHRKASP 87

[Close]

BLAST of Cmc04g0113831 vs. ExPASy TrEMBL
Match: A0A0A0LBI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17
Identity = 70/88 (79.55%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MASPSKLFLCFCFFIFLIISSSLAAVQRPN-GGGGGGGGGGSGSASSSGGGSASGSGSGS 60
          MAS SKLFLCFCFFIFLI SS+LAAVQRPN GGGGGGGGGGSGS SSSG GSASGSGSGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60

Query: 61 GSGSGGGSGFNGVSVDQASGLNHRKVSP 88
          GSG G G    G+S DQA G  HRK SP
Sbjct: 61 GSGGGSGDSV-GISSDQAGGSTHRKASP 87

The following BLAST results are available for this feature:

BLAST of Cmc04g0113831 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59380.1	1.8e-16	79.55	hypothetical protein Csa_000800 [Cucumis sativus]	[more]

BLAST of Cmc04g0113831 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0113831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBI4	8.9e-17	79.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1	[more]

BLAST of Cmc04g0113831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0113831.1	Cmc04g0113831.1	mRNA