Cmc04g0110001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0110001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gibberellin regulated protein
Location	CMiso1.1chr04: 29334085 .. 29335388 (-)
RNA-Seq Expression	Cmc04g0110001
Synteny	Cmc04g0110001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTTCTACTTTTCCTTTTAATTCTAAACCACACAATATTCTTTCATAGCCTTTCTTCATCCATCCAAATGTGTGTATATATATAACGATAATGTACACATTCTCAAATGAATCATCAACACAATCTCTCTCTCTCTTTCTCTCTCTCTCTCTATTTCTCTCTGCCTCTCTCTATTATATATAGAATTTAGTTTGAAATAATGGGAAGGAAGCAAATAATAGAGATATTGCTGTTTGTAGTAATGCTGCTGAATTGTGTTCTCTTAGCACACAATCAAGTAATAACACTTCTCCTAATTACTCCATCCTTATTTTATTTGATTTCTTACTACCAATTAGTTAGGGCTCTTTCTGCTTTTGTACACATATGAATGGTTTTTGGTTTGGTTCATTGTGTTTTATAGGCCATTAGTGAGGCTCCAACACCACAGCCACAGACTAGTGCCAATTATTCCAATCCCATGGTAATTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTGGAAAATATTTAATCACATTGTAAAATATGGTGACTCCATCAATTGATTATTGTCTCTTTTTAAAAAAAATTGGAAACTAATGTATGCAACTCTTTTTCCATTTTTTTCCAAATTTCAGCATGGAGTTACTGAAGGCAGCCTTCAACCTCAAGGTAAAATATTCTACTGAAAGGATTTTTCATGTGGTCAATTATTTTAAACTCTCCTTTAGTCAAGAAAGTGTTCGGTTTTTTATCTTTTGAAATTAAACACTTAAATGAGTTTGAGGTTGGGGGATGCAGAATGTGGGCCTAGATGCACAGGGAGATGTTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGTTGTGCCAAATGCTTGTGTGTTCCTTATGGGACTTATGGCAACAAACAAACTTGTCCTTGCTACAATCAATGGAAGACTAAGAGAGGAGGCCCCAAATGCCCTTGATTAATTTTCATTTTCATCATTTCATTTCCCAACAACAAAAAACCATCATTAGTCACTTTCTAATCTTCTTTTTGGAACGTCTCGATTCTTTCGTTGTACTTTTAAAAAGTGATAGTTTCATGAAGGGTGACTTCTTAAAAGTATATATTATATGGAATGGTTATTGTTGTCTTGACCTTTGATCATATACTAGACCGAGCTTCAACTAAAACTAATTGTAGTAAAAGTAGGATAGATTGATTCCACACTGTAACAAGAATTGGTTTTTTGAGTGTCAAAGAAATTTGAGAGAATTAAATTAAATATAGTGAGAGCATATAACCTTAAACAGGATT

mRNA sequence

TTTATTTTCTACTTTTCCTTTTAATTCTAAACCACACAATATTCTTTCATAGCCTTTCTTCATCCATCCAAATGTGTGTATATATATAACGATAATGTACACATTCTCAAATGAATCATCAACACAATCTCTCTCTCTCTTTCTCTCTCTCTCTCTATTTCTCTCTGCCTCTCTCTATTATATATAGAATTTAGTTTGAAATAATGGGAAGGAAGCAAATAATAGAGATATTGCTGTTTGTAGTAATGCTGCTGAATTGTGTTCTCTTAGCACACAATCAAGCCATTAGTGAGGCTCCAACACCACAGCCACAGACTAGTGCCAATTATTCCAATCCCATGCATGGAGTTACTGAAGGCAGCCTTCAACCTCAAGAATGTGGGCCTAGATGCACAGGGAGATGTTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGTTGTGCCAAATGCTTGTGTGTTCCTTATGGGACTTATGGCAACAAACAAACTTGTCCTTGCTACAATCAATGGAAGACTAAGAGAGGAGGCCCCAAATGCCCTTGATTAATTTTCATTTTCATCATTTCATTTCCCAACAACAAAAAACCATCATTAGTCACTTTCTAATCTTCTTTTTGGAACGTCTCGATTCTTTCGTTGTACTTTTAAAAAGTGATAGTTTCATGAAGGGTGACTTCTTAAAAGTATATATTATATGGAATGGTTATTGTTGTCTTGACCTTTGATCATATACTAGACCGAGCTTCAACTAAAACTAATTGTAGTAAAAGTAGGATAGATTGATTCCACACTGTAACAAGAATTGGTTTTTTGAGTGTCAAAGAAATTTGAGAGAATTAAATTAAATATAGTGAGAGCATATAACCTTAAACAGGATT

Coding sequence (CDS)

ATGGGAAGGAAGCAAATAATAGAGATATTGCTGTTTGTAGTAATGCTGCTGAATTGTGTTCTCTTAGCACACAATCAAGCCATTAGTGAGGCTCCAACACCACAGCCACAGACTAGTGCCAATTATTCCAATCCCATGCATGGAGTTACTGAAGGCAGCCTTCAACCTCAAGAATGTGGGCCTAGATGCACAGGGAGATGTTCAAAGACAGCATTCAAGAAGCCATGCATGTTCTTTTGTCAAAAGTGTTGTGCCAAATGCTTGTGTGTTCCTTATGGGACTTATGGCAACAAACAAACTTGTCCTTGCTACAATCAATGGAAGACTAAGAGAGGAGGCCCCAAATGCCCTTGA

Protein sequence

MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP

Homology

[Close]

BLAST of Cmc04g0110001 vs. NCBI nr
Match: XP_008464949.1 (PREDICTED: protein GAST1-like [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 3.2e-64
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG 60
           MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG
Sbjct: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG 60

Query: 61  PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 117

[Close]

BLAST of Cmc04g0110001 vs. NCBI nr
Match: XP_011652310.1 (protein GAST1 [Cucumis sativus] >KAE8651268.1 hypothetical protein Csa_001499 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG 60
           MGRKQ+IEILLFVVMLLNCVLL HN AISEAPTPQPQTS+NYSNPMHGVTEGSLQPQECG
Sbjct: 1   MGRKQVIEILLFVVMLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECG 60

Query: 61  PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
            RCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  ARCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 117

[Close]

BLAST of Cmc04g0110001 vs. NCBI nr
Match: XP_038903614.1 (protein GAST1 [Benincasa hispida])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANY-SNPMHGVTEGSLQPQEC 60
           M RKQ++ ++LF+VMLLNCVLL HN AISEAPTPQPQ+S NY S+PMHGVTEGSLQPQEC
Sbjct: 32  MARKQVM-VMLFLVMLLNCVLLVHNHAISEAPTPQPQSSGNYSSSPMHGVTEGSLQPQEC 91

Query: 61  GPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           GPRCT RC KTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYN+WKTKRGGPKCP
Sbjct: 92  GPRCTERCLKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNEWKTKRGGPKCP 148

[Close]

BLAST of Cmc04g0110001 vs. NCBI nr
Match: XP_022980754.1 (protein GAST1-like [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 95/119 (79.83%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQT--SANYSNPMHGVTEGSLQPQE 60
           M RKQ+ E + F VML NC+LLA N +ISEAPTPQPQ+  S+NY +PMHGVTEGSL+P+E
Sbjct: 1   MARKQVTE-MFFAVMLFNCLLLAQNHSISEAPTPQPQSGGSSNYPDPMHGVTEGSLEPEE 60

Query: 61  CGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           CG RC GRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+CPCYN+WKTKRGGPKCP
Sbjct: 61  CGGRCAGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCPCYNEWKTKRGGPKCP 118

[Close]

BLAST of Cmc04g0110001 vs. NCBI nr
Match: XP_023516497.1 (protein GAST1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQT-SANYSNPMHGVTEGSLQPQEC 60
           M RKQI+E + F VM LNC+LLA N +ISEAPTPQPQ+   N  +PMHGVTEGSL+P+EC
Sbjct: 1   MARKQIME-MFFAVMFLNCLLLAQNHSISEAPTPQPQSGGGNSPDPMHGVTEGSLEPEEC 60

Query: 61  GPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           G RC GRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+CPCYN+WKTKRGGPKCP
Sbjct: 61  GGRCAGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCPCYNEWKTKRGGPKCP 117

[Close]

BLAST of Cmc04g0110001 vs. ExPASy Swiss-Prot
Match: P27057 (Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.5e-35
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 7   IEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECGPRCTGR 66
           + I+LFV+++   V L  NQ          Q     +N ++GV+EG L PQ+C P+CT R
Sbjct: 5   MSIVLFVLLV---VFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYR 64

Query: 67  CSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           CSKT++KKPCMFFCQKCCAKCLCVP GTYGNKQ+CPCYN WKTKRGGPKCP
Sbjct: 65  CSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112

[Close]

BLAST of Cmc04g0110001 vs. ExPASy Swiss-Prot
Match: Q6NMQ7 (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 52  GSLQPQECGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           GSL+  +CG +CT RCS T + KPCMFFCQKCCAKCLCVP GTYGNKQ CPCYN WKT++
Sbjct: 36  GSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQ 95

Query: 112 GGPKCP 118
           GGPKCP
Sbjct: 96  GGPKCP 101

[Close]

BLAST of Cmc04g0110001 vs. ExPASy Swiss-Prot
Match: P47926 (Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 42  YSNPMHGVTEGSLQPQECGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTC 101
           +SN + G  +  L+P +C PRCT RCS T+ KKPCMFFCQKCCA CLCVP G YGNKQ+C
Sbjct: 23  FSNVVEGYNK--LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSC 82

Query: 102 PCYNQWKTKRGGPKCP 118
           PCYN WKT+ G PKCP
Sbjct: 83  PCYNNWKTQEGKPKCP 96

[Close]

BLAST of Cmc04g0110001 vs. ExPASy Swiss-Prot
Match: Q84J95 (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.6e-26
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 52  GSLQPQECGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           G L+PQ+C  +C+ RCS T+ KKPCMFFC KCC KCLCVP GT+GNKQTCPCYN WKTK 
Sbjct: 32  GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKE 91

Query: 112 GGPKCP 118
           G PKCP
Sbjct: 92  GRPKCP 97

[Close]

BLAST of Cmc04g0110001 vs. ExPASy Swiss-Prot
Match: A8MR46 (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.9e-26
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 7   IEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQP-QECGPRCTG 66
           + I++F +++L+ +L AH   +                     T+ ++ P  ECGPRC  
Sbjct: 5   LSIIVFSIVVLHLLLSAHMHFLINVCA-------------ECETKSAIPPLLECGPRCGD 64

Query: 67  RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           RCS T +KKPC+FFC KCC KCLCVP GTYGNKQ CPCYN WKTK GGPKCP
Sbjct: 65  RCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of Cmc04g0110001 vs. ExPASy TrEMBL
Match: A0A1S3CMR4 (protein GAST1-like OS=Cucumis melo OX=3656 GN=LOC103502695 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.5e-64
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG 60
           MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG
Sbjct: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG 60

Query: 61  PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 117

[Close]

BLAST of Cmc04g0110001 vs. ExPASy TrEMBL
Match: A0A0A0LI43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841990 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.4e-55
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 15  MLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECGPRCTGRCSKTAFKK 74
           MLLNCVLL HN AISEAPTPQPQTS+NYSNPMHGVTEGSLQPQECG RCTGRCSKTAFKK
Sbjct: 1   MLLNCVLLVHNLAISEAPTPQPQTSSNYSNPMHGVTEGSLQPQECGARCTGRCSKTAFKK 60

Query: 75  PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP
Sbjct: 61  PCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 103

[Close]

BLAST of Cmc04g0110001 vs. ExPASy TrEMBL
Match: A0A6J1J049 (protein GAST1-like OS=Cucurbita maxima OX=3661 GN=LOC111480028 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.7e-51
Identity = 95/119 (79.83%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQT--SANYSNPMHGVTEGSLQPQE 60
           M RKQ+ E + F VML NC+LLA N +ISEAPTPQPQ+  S+NY +PMHGVTEGSL+P+E
Sbjct: 1   MARKQVTE-MFFAVMLFNCLLLAQNHSISEAPTPQPQSGGSSNYPDPMHGVTEGSLEPEE 60

Query: 61  CGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           CG RC GRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+CPCYN+WKTKRGGPKCP
Sbjct: 61  CGGRCAGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCPCYNEWKTKRGGPKCP 118

[Close]

BLAST of Cmc04g0110001 vs. ExPASy TrEMBL
Match: A0A6J1EQZ6 (protein GAST1-like OS=Cucurbita moschata OX=3662 GN=LOC111436994 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQT-SANYSNPMHGVTEGSLQPQEC 60
           M RKQI+E   F V+LLNC+LLA N +ISEAPTPQP +   NY +PM GV+EGSL+P+EC
Sbjct: 1   MARKQILE-TFFAVVLLNCLLLAQNHSISEAPTPQPHSGGGNYPDPMRGVSEGSLEPEEC 60

Query: 61  GPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           G RC GRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+CPCYN+WKTKRGGPKCP
Sbjct: 61  GGRCAGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCPCYNEWKTKRGGPKCP 117

[Close]

BLAST of Cmc04g0110001 vs. ExPASy TrEMBL
Match: A0A6J1E399 (protein GAST1 OS=Momordica charantia OX=3673 GN=LOC111025644 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 93/117 (79.49%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MGRKQIIEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECG 60
           M RKQ + ++ F+VM LN VLL  N AISEAPTPQPQ   N+  PM GVTEGSLQPQECG
Sbjct: 1   MARKQTM-MIFFLVMFLNWVLLVQNHAISEAPTPQPQPIGNHPGPMPGVTEGSLQPQECG 60

Query: 61  PRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           PRCT RCSKTAFKKPCMFFCQKCCAKCLCVP+GTYGNKQ+CPCYN WKTKRGGPKCP
Sbjct: 61  PRCTDRCSKTAFKKPCMFFCQKCCAKCLCVPFGTYGNKQSCPCYNDWKTKRGGPKCP 116

[Close]

BLAST of Cmc04g0110001 vs. TAIR 10
Match: AT1G74670.1 (Gibberellin-regulated family protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-28
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 52  GSLQPQECGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           GSL+  +CG +CT RCS T + KPCMFFCQKCCAKCLCVP GTYGNKQ CPCYN WKT++
Sbjct: 36  GSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQ 95

Query: 112 GGPKCP 118
           GGPKCP
Sbjct: 96  GGPKCP 101

[Close]

BLAST of Cmc04g0110001 vs. TAIR 10
Match: AT3G02885.1 (GAST1 protein homolog 5 )

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-27
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 52  GSLQPQECGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           G L+PQ+C  +C+ RCS T+ KKPCMFFC KCC KCLCVP GT+GNKQTCPCYN WKTK 
Sbjct: 32  GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKE 91

Query: 112 GGPKCP 118
           G PKCP
Sbjct: 92  GRPKCP 97

[Close]

BLAST of Cmc04g0110001 vs. TAIR 10
Match: AT3G10185.1 (Gibberellin-regulated family protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-27
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 7   IEILLFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQP-QECGPRCTG 66
           + I++F +++L+ +L AH   +                     T+ ++ P  ECGPRC  
Sbjct: 5   LSIIVFSIVVLHLLLSAHMHFLINVCA-------------ECETKSAIPPLLECGPRCGD 64

Query: 67  RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           RCS T +KKPC+FFC KCC KCLCVP GTYGNKQ CPCYN WKTK GGPKCP
Sbjct: 65  RCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of Cmc04g0110001 vs. TAIR 10
Match: AT2G30810.1 (Gibberellin-regulated family protein )

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-26
Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 11  LFVVMLLNCVLLAHNQAISEAPTPQPQTSANYSNPMHGVTEGSLQPQECGPRCTGRCSKT 70
           L VV +++ +L A   +  +    Q Q  A + N      EGSL+P+EC   C  RCS T
Sbjct: 4   LIVVFVISSLLFATQFSNGDELESQAQAPAIHKNG----GEGSLKPEECPKACEYRCSAT 63

Query: 71  AFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKRGGPKCP 118
           + +KPC+FFC KCC KCLCVP GTYG+K+ CPCYN W TK GGPKCP
Sbjct: 64  SHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of Cmc04g0110001 vs. TAIR 10
Match: AT5G15230.2 (GAST1 protein homolog 4 )

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 52  GSLQPQECGPRCTGRCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQTCPCYNQWKTKR 111
           GSL+  +C   C  RC KT + K C+ FC KCC KCLCVP G YGNKQ C CYN WKT+ 
Sbjct: 18  GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQE 77

Query: 112 GGPKCP 118
           GGPKCP
Sbjct: 78  GGPKCP 83

The following BLAST results are available for this feature:

BLAST of Cmc04g0110001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464949.1	3.2e-64	100.00	PREDICTED: protein GAST1-like [Cucumis melo]	[more]
XP_011652310.1	1.5e-61	95.73	protein GAST1 [Cucumis sativus] >KAE8651268.1 hypothetical protein Csa_001499 [C...	[more]
XP_038903614.1	2.3e-54	86.44	protein GAST1 [Benincasa hispida]	[more]
XP_022980754.1	1.2e-50	79.83	protein GAST1-like [Cucurbita maxima]	[more]
XP_023516497.1	1.7e-49	79.66	protein GAST1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc04g0110001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27057	5.5e-35	61.26	Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1	[more]
Q6NMQ7	1.9e-27	75.76	Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV...	[more]
P47926	1.6e-26	67.11	Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1	[more]
Q84J95	4.6e-26	72.73	Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV...	[more]
A8MR46	7.9e-26	50.00	Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 ...	[more]

BLAST of Cmc04g0110001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CMR4	1.5e-64	100.00	protein GAST1-like OS=Cucumis melo OX=3656 GN=LOC103502695 PE=3 SV=1	[more]
A0A0A0LI43	8.4e-55	96.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841990 PE=3 SV=1	[more]
A0A6J1J049	5.7e-51	79.83	protein GAST1-like OS=Cucurbita maxima OX=3661 GN=LOC111480028 PE=3 SV=1	[more]
A0A6J1EQZ6	1.2e-48	77.97	protein GAST1-like OS=Cucurbita moschata OX=3662 GN=LOC111436994 PE=3 SV=1	[more]
A0A6J1E399	1.5e-48	79.49	protein GAST1 OS=Momordica charantia OX=3673 GN=LOC111025644 PE=3 SV=1	[more]

BLAST of Cmc04g0110001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74670.1	1.3e-28	75.76	Gibberellin-regulated family protein	[more]
AT3G02885.1	3.3e-27	72.73	GAST1 protein homolog 5	[more]
AT3G10185.1	5.6e-27	50.00	Gibberellin-regulated family protein	[more]
AT2G30810.1	2.8e-26	51.40	Gibberellin-regulated family protein	[more]
AT5G15230.2	1.2e-21	62.12	GAST1 protein homolog 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 58..117 e-value: 1.9E-21 score: 76.0
None	No IPR available	PANTHER	PTHR23201:SF52	GIBBERELLIN-REGULATED PROTEIN 13	coord: 6..117
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 6..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0110001.1	Cmc04g0110001.1	mRNA