Cmc04g0108511 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0108511
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pectin lyase-like superfamily protein
Location	CMiso1.1chr04: 28051377 .. 28051878 (-)
RNA-Seq Expression	Cmc04g0108511
Synteny	Cmc04g0108511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTGCATGTTTTAATTTCAACATGTTTATGTTTTTAGCCTAATATCTTACATATGATTTAACCACTACATATTTTCTCAATCATCAAACATGTTTTAACTCAAGGATTGTTTTTTTGTTTGTTTGTTTAAAATGATCAGAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGACGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACGGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGTAATTGGAGATGATTGTATATCCGTGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAGTGGTAGGAGTGATGGTGAAAAAATGTAA

mRNA sequence

ATGAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGACGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACGGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGTAATTGGAGATGATTGTATATCCGTGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAGTGGTAGGAGTGATGGTGAAAAAATGTAA

Coding sequence (CDS)

ATGAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGACGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACGGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGTAATTGGAGATGATTGTATATCCGTGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGAAGTGGTAGGAGTGATGGTGAAAAAATGTAA

Protein sequence

MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGKRSGRSDGEKM

Homology

[Close]

BLAST of Cmc04g0108511 vs. NCBI nr
Match: KAA0045594.1 (exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 145 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 204

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 205 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of Cmc04g0108511 vs. NCBI nr
Match: XP_016903689.1 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 100 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 159

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 160 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 208

[Close]

BLAST of Cmc04g0108511 vs. NCBI nr
Match: KAA0045610.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 145 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 204

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 205 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of Cmc04g0108511 vs. NCBI nr
Match: KAA0045593.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 145 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 204

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 205 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of Cmc04g0108511 vs. NCBI nr
Match: XP_008466933.1 (PREDICTED: polygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 40  MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 99

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 100 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 148

[Close]

BLAST of Cmc04g0108511 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.5e-32
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MN  FNF+ NSIV  +TS DSKN+H+ + GCKN+TFD  TITA G+SPN DGIH G S  
Sbjct: 148 MNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTD 207

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYS 107
           + ILNTNI  GDDC+S+GD +KQI +  V CG G+G+S+ SLGK++
Sbjct: 208 VKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFT 253

[Close]

BLAST of Cmc04g0108511 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 60/105 (57.14%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNL+   +TNSI+ D+T+LDSKN+H+N++GCKNLTF+   I+A   S N DGIH G S+ 
Sbjct: 108 MNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDG 167

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKY 106
           +NI+NT I  GDDCIS+GD +K I I ++TCG G+GIS+ SLG+Y
Sbjct: 168 VNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRY 212

[Close]

BLAST of Cmc04g0108511 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           +N++F+F+TN+++ DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE 
Sbjct: 150 VNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEG 209

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKY 106
           +NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI SLGK+
Sbjct: 210 VNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKF 254

[Close]

BLAST of Cmc04g0108511 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-28
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           +N++F+F+TN+++ DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE 
Sbjct: 150 VNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEG 209

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKY 106
           +NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI SLGK+
Sbjct: 210 VNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKF 254

[Close]

BLAST of Cmc04g0108511 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.6e-28
Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNL+F+F+ +++V DITSL+SK +HIN+L C+++TF HVT+TA G S N DGIH G S+ 
Sbjct: 129 MNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKG 188

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           + I NT I  GDDCIS+G  ++ + I  V CG G+GISI SLG+Y+  K
Sbjct: 189 VTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEK 237

[Close]

BLAST of Cmc04g0108511 vs. ExPASy TrEMBL
Match: A0A5A7TRZ0 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00600 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 145 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 204

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 205 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of Cmc04g0108511 vs. ExPASy TrEMBL
Match: A0A5D3DYI3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00050 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 145 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 204

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 205 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of Cmc04g0108511 vs. ExPASy TrEMBL
Match: A0A5D3BWP4 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00550 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 145 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 204

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 205 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of Cmc04g0108511 vs. ExPASy TrEMBL
Match: A0A5A7TR51 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00990 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 145 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 204

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 205 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 253

[Close]

BLAST of Cmc04g0108511 vs. ExPASy TrEMBL
Match: A0A1S4E643 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQ
Sbjct: 100 MNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQ 159

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGK 110
           INILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI SLGKYSK K
Sbjct: 160 INILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEK 208

[Close]

BLAST of Cmc04g0108511 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-29
Identity = 56/105 (53.33%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           ++++F+F+ N+ + DI+S+D+KN+HIN+LG KN+TFD+V + A   SPN DGIH G SE 
Sbjct: 140 ISIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEG 199

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKY 106
           + ILN+ I  GDDCISVGD  K + + +V CG G+GIS+ SLG+Y
Sbjct: 200 VKILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRY 244

[Close]

BLAST of Cmc04g0108511 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-28
Identity = 53/105 (50.48%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           ++++F+F+TN+ + DI+S+D+KN+HIN++G KN+TFD+V I A   SPN DGIH G S  
Sbjct: 140 ISIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVG 199

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKY 106
           ++I+N+ I  GDDC+SVGD    +++ +V CG G+GIS+ SLG+Y
Sbjct: 200 VSIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRY 244

[Close]

BLAST of Cmc04g0108511 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 56/106 (52.83%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           ++++F+F+T++ +  ITSLD+K++HIN++G KN+TF+ V I A   SPN DGIH G S+ 
Sbjct: 139 ISIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDG 198

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYS 107
           I I+N+ I  GDDC+SVGD  K +++  VTCG G+GISI SLG+YS
Sbjct: 199 IKIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYS 244

[Close]

BLAST of Cmc04g0108511 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-27
Identity = 56/105 (53.33%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           ++++F+FI NS + DI+S+D+KN+HIN+LG KN+T +++ I A  +SPN DGIH G S+ 
Sbjct: 139 ISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDG 198

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKY 106
           + ILN+ I  GDDCISVGD  K + +  VTCG G+GIS+ SLG+Y
Sbjct: 199 VKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRY 243

[Close]

BLAST of Cmc04g0108511 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-23
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQ 60
           +N++F  +TNS +  ITS +SK +H+N+L CKN+T   + I A   S N DGIH G S  
Sbjct: 190 INIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNG 249

Query: 61  INILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKY 106
           +N++   I  GDDC+S+GD  + +++ +V CG G+GISI SLG+Y
Sbjct: 250 VNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRY 294

The following BLAST results are available for this feature:

BLAST of Cmc04g0108511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045594.1	2.8e-44	86.24	exopolygalacturonase-like [Cucumis melo var. makuwa]	[more]
XP_016903689.1	2.8e-44	86.24	PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]	[more]
KAA0045610.1	2.8e-44	86.24	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalactur...	[more]
KAA0045593.1	2.8e-44	86.24	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalactur...	[more]
XP_008466933.1	2.8e-44	86.24	PREDICTED: polygalacturonase-like, partial [Cucumis melo]	[more]

BLAST of Cmc04g0108511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40312	7.5e-32	59.43	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P24548	2.7e-29	57.14	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q39766	2.3e-28	54.29	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	3.0e-28	54.29	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
Q6H9K0	8.6e-28	54.13	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]

BLAST of Cmc04g0108511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRZ0	1.4e-44	86.24	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DYI3	1.4e-44	86.24	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3BWP4	1.4e-44	86.24	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TR51	1.4e-44	86.24	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S4E643	1.4e-44	86.24	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1	[more]

BLAST of Cmc04g0108511 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07840.1	8.0e-29	53.33	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	6.8e-28	50.48	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	1.2e-27	52.83	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	1.5e-27	53.33	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	2.3e-23	45.71	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..112 e-value: 2.4E-28 score: 101.2
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 3..107 e-value: 7.9E-29 score: 100.7
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..107
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 2..107
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 3..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0108511.1	Cmc04g0108511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity