Cmc04g0108151 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0108151
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr04: 27107542 .. 27108702 (+)
RNA-Seq Expression	Cmc04g0108151
Synteny	Cmc04g0108151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGAGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTTGTAATAGAAAGGATTGGCCCAAGTGGAAAGGAGCCATCCAAACAGAACTAAACTCACTCACGAAACATGAAGTTTTTGAACCTATAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAGACTAGGGATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACTGCATACTTATATGGATCTTTGGAAAATGAAATTTATATGAAAATCCCTAAAGGATTTAAGATACCTGAATCATATAATTCAAACTTTAGAGAATTATGTTCAATCAAACTACAAATATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCACTTAAGTGAATATTTATTGAAAGAAGTTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTTAGGATTTGGGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTAAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGACTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCCTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGATCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGAATGTACTTCGTTATCTTTGA

mRNA sequence

ATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGAGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTTGTAATAGAAAGGATTGGCCCAAGTGGAAAGGAGCCATCCAAACAGAACTAAACTCACTCACGAAACATGAAGTTTTTGAACCTATAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAGACTAGGGATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACTGCATACTTATATGGATCTTTGGAAAATGAAATTTATATGAAAATCCCTAAAGGATTTAAGATACCTGAATCATATAATTCAAACTTTAGAGAATTATGTTCAATCAAACTACAAATATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCACTTAAGTGAATATTTATTGAAAGAAGTTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTTAGGATTTGGGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTAAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGACTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCCTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGATCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGAATGTACTTCGTTATCTTTGA

Coding sequence (CDS)

ATGACAGGAAAAAGGTGGAATAGAATTAATGTAGTTGTGGACAACATTTTTGAGTATAATGTTGCACATAATATCATTCATGAAAATGAGGATTATGAACCTAAATCTGTTGACGAATGTTGTAATAGAAAGGATTGGCCCAAGTGGAAAGGAGCCATCCAAACAGAACTAAACTCACTCACGAAACATGAAGTTTTTGAACCTATAGTTTATACACCTAAAGGTGTAAAACCTGTGGGATTTAAATGGGTATTTGTGCGTAAACGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGACTTGTTGCACAAGGATTCTCTCAAAGACTAGGGATTGATTATGAGGAAACATATTCTCCTGTGGTGGATGCTATTACATTAAGATATTTAATTAGTCTGGCTGTATGTGAAAATCTTGATATGCATCTTATGGATGTAGTTACTGCATACTTATATGGATCTTTGGAAAATGAAATTTATATGAAAATCCCTAAAGGATTTAAGATACCTGAATCATATAATTCAAACTTTAGAGAATTATGTTCAATCAAACTACAAATATCATTATATGGATTGAAACAATCAGGACGAATGTGGTACAATCACTTAAGTGAATATTTATTGAAAGAAGTTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTTAGGATTTGGGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAACTCCTAAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAAGGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGACTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGTACCCTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGATCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAGTTAAGAATGTACTTCGTTATCTTTGA

Protein sequence

MTGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLTKHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFRELCSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDLNIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKNVLRYL

Homology

[Close]

BLAST of Cmc04g0108151 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 617.8 bits (1592), Expect = 6.1e-173
Identity = 291/385 (75.58%), Postives = 339/385 (88.05%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 505 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 564

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 565 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 624

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 625 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 684

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 685 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 744

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 745 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 804

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 805 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 864

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSS+PT+RHWNG+K++LRYL
Sbjct: 865 NLLARYSSAPTRRHWNGIKHILRYL 889

[Close]

BLAST of Cmc04g0108151 vs. NCBI nr
Match: RVW50867.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 617.1 bits (1590), Expect = 1.0e-172
Identity = 290/385 (75.32%), Postives = 339/385 (88.05%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDSFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLA+YSS+PT+RHWNG+K++LRYL
Sbjct: 878 NLLAKYSSAPTRRHWNGIKHILRYL 902

[Close]

BLAST of Cmc04g0108151 vs. NCBI nr
Match: RVW51062.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 616.7 bits (1589), Expect = 1.4e-172
Identity = 290/385 (75.32%), Postives = 339/385 (88.05%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 508 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 567

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 568 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 627

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 628 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 687

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 688 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 747

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 748 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 807

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYL+AIGALMYLAN TR DIAFSV
Sbjct: 808 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLNAIGALMYLANCTRPDIAFSV 867

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSS+PT+RHWNG+K++LRYL
Sbjct: 868 NLLARYSSAPTRRHWNGIKHILRYL 892

[Close]

BLAST of Cmc04g0108151 vs. NCBI nr
Match: RVW51051.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 616.3 bits (1588), Expect = 1.8e-172
Identity = 290/385 (75.32%), Postives = 338/385 (87.79%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVAFDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR G+DYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGVDYEETYSP 637

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKK + GF IIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKLETGFAIIAVYVDDL 757

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSSSPT+RHWNG+K++LRYL
Sbjct: 878 NLLARYSSSPTRRHWNGIKHILRYL 902

[Close]

BLAST of Cmc04g0108151 vs. NCBI nr
Match: RVX16158.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 613.2 bits (1580), Expect = 1.5e-171
Identity = 289/385 (75.06%), Postives = 338/385 (87.79%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLK+ Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKKGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LK FYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKCFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSS+PT+RHWNG+K++LRYL
Sbjct: 878 NLLARYSSTPTRRHWNGIKHILRYL 902

[Close]

BLAST of Cmc04g0108151 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 7.0e-63
Identity = 140/362 (38.67%), Postives = 218/362 (60.22%), Query Frame = 0


Query: 29   NEDYEPKSVDECCNRKDWPKWKGAIQTELNSLTKHEVFEPIVYTPKGVKPVGFKWVFVRK 88
            ++D EP+S+ E  +  +  +   A+Q E+ SL K+  ++ +V  PKG +P+  KWVF  K
Sbjct: 806  SDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYK-LVELPKGKRPLKCKWVFKLK 865

Query: 89   RNENNEVTRYKARLVAQGFSQRLGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVV 148
            ++ + ++ RYKARLV +GF Q+ GID++E +SPVV   ++R ++SLA   +L++  +DV 
Sbjct: 866  KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 925

Query: 149  TAYLYGSLENEIYMKIPKGFKIPESYNSNFRELCSIKLQISLYGLKQSGRMWYNHLSEYL 208
            TA+L+G LE EIYM+ P+GF++    +     +C  KL  SLYGLKQ+ R WY     ++
Sbjct: 926  TAFLHGDLEEEIYMEQPEGFEVAGKKHM----VC--KLNKSLYGLKQAPRQWYMKFDSFM 985

Query: 209  LKEVYQNNPICPCVFIKK-SQLGFGIIAVYVDDLNIIGTPKEL-SKAIEYLKKEFEMKDL 268
              + Y      PCV+ K+ S+  F I+ +YVDD+ I+G  K L +K    L K F+MKDL
Sbjct: 986  KSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDL 1045

Query: 269  GKTKFCLDLQI--EHLADGIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDIFR 328
            G  +  L ++I  E  +  +++ Q  Y E++L+RF M  A P++ P+       KK    
Sbjct: 1046 GPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK--MC 1105

Query: 329  PREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKNVLR 387
            P    E+    +VPY SA+G+LMY    TR DIA +V +++R+  +P K HW  VK +LR
Sbjct: 1106 PTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILR 1158

[Close]

BLAST of Cmc04g0108151 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 219.9 bits (559), Expect = 4.9e-56
Identity = 141/387 (36.43%), Postives = 209/387 (54.01%), Query Frame = 0


Query: 7    NRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLTKHEVF 66
            N +N VV N      AH I ++     P S DE   R D   W+ AI TELN+   +  +
Sbjct: 874  NSLNKVVLN------AHTIFND----VPNSFDEIQYRDDKSSWEEAINTELNAHKINNTW 933

Query: 67   EPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSPVVDAI 126
              I   P+    V  +WVF  K NE     RYKARLVA+GF+Q+  IDYEET++PV    
Sbjct: 934  -TITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARIS 993

Query: 127  TLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFRELCSIKL 186
            + R+++SL +  NL +H MDV TA+L G+L+ EIYM++P+G       + N   +C  KL
Sbjct: 994  SFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI------SCNSDNVC--KL 1053

Query: 187  QISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFI-KKSQLGFGI-IAVYVDDLNI- 246
              ++YGLKQ+ R W+    + L +  + N+ +  C++I  K  +   I + +YVDD+ I 
Sbjct: 1054 NKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIA 1113

Query: 247  IGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYMDK 306
             G    ++    YL ++F M DL + K  + ++IE   D I++ QS Y +KIL +F M+ 
Sbjct: 1114 TGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMEN 1173

Query: 307  AHPLNIPMVVRSLDVKKDIFRPREDNEELLGPE----VPYLSAIGALMYLANNTRSDIAF 366
             + ++ P+             P + N ELL  +     P  S IG LMY+   TR D+  
Sbjct: 1174 CNAVSTPL-------------PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTT 1228

Query: 367  SVNLLARYSSSPTKRHWNGVKNVLRYL 387
            +VN+L+RYSS      W  +K VLRYL
Sbjct: 1234 AVNILSRYSSKNNSELWQNLKRVLRYL 1228

[Close]

BLAST of Cmc04g0108151 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-47
Identity = 111/340 (32.65%), Postives = 183/340 (53.82%), Query Frame = 0


Query: 48   KWKGAIQTELNSLTKHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGF 107
            +W+ A+ +E+N+   +  ++ +   P  V  VG +W+F +K N +  + RYKARLVA+G+
Sbjct: 950  RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY 1009

Query: 108  SQRLGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKG 167
            +QR G+DY ET+SPV+ + ++R ++ +AV  +  +  +DV  A+L G+L +E+YM  P G
Sbjct: 1010 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPG 1069

Query: 168  FKIPESYNSNFRELCSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKS 227
            F   +      R     +L+ ++YGLKQ+ R WY  L  YLL   + N+     +F+ + 
Sbjct: 1070 FVDKD------RPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1129

Query: 228  QLGFGIIAVYVDDLNIIGTPKELSK-AIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFI 287
                  + VYVDD+ I G    L K  ++ L + F +K+     + L ++ + +  G+ +
Sbjct: 1130 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1189

Query: 288  HQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGAL 347
             Q  YT  +L R  M  A P+  PM            +    +   L     Y   +G+L
Sbjct: 1190 SQRRYTLDLLARTNMLTAKPVATPMATSP--------KLTLHSGTKLPDPTEYRGIVGSL 1249

Query: 348  MYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKNVLRYL 387
             YLA  TR D++++VN L++Y   PT  HWN +K VLRYL
Sbjct: 1250 QYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYL 1274

[Close]

BLAST of Cmc04g0108151 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.4e-47
Identity = 119/370 (32.16%), Postives = 204/370 (55.14%), Query Frame = 0


Query: 18   EYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLTKHEVFEPIVYTPKGVK 77
            +Y++A ++  E+   EP++  +    KD  +W+ A+ +E+N+   +  ++ +   P  V 
Sbjct: 943  KYSLAVSLAAES---EPRTAIQAL--KD-ERWRNAMGSEINAQIGNHTWDLVPPPPSHVT 1002

Query: 78   PVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSPVVDAITLRYLISLAVC 137
             VG +W+F +K N +  + RYKARLVA+G++QR G+DY ET+SPV+ + ++R ++ +AV 
Sbjct: 1003 IVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVD 1062

Query: 138  ENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFRELCSIKLQISLYGLKQSG 197
             +  +  +DV  A+L G+L +++YM  P GF   +  N     +C  KL+ +LYGLKQ+ 
Sbjct: 1063 RSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPN----YVC--KLRKALYGLKQAP 1122

Query: 198  RMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDLNIIGT-PKELSKAIEY 257
            R WY  L  YLL   + N+     +F+ +       + VYVDD+ I G  P  L   ++ 
Sbjct: 1123 RAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDN 1182

Query: 258  LKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSL 317
            L + F +KD  +  + L ++ + +  G+ + Q  Y   +L R  M  A P+  PM   + 
Sbjct: 1183 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPM---AP 1242

Query: 318  DVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSVNLLARYSSSPTKRHW 377
              K  ++       +L  P   Y   +G+L YLA  TR DI+++VN L+++   PT+ H 
Sbjct: 1243 SPKLSLY----SGTKLTDP-TEYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHL 1291

Query: 378  NGVKNVLRYL 387
              +K +LRYL
Sbjct: 1303 QALKRILRYL 1291

[Close]

BLAST of Cmc04g0108151 vs. ExPASy Swiss-Prot
Match: P47024 (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 3.5e-22
Identity = 108/401 (26.93%), Postives = 188/401 (46.88%), Query Frame = 0


Query: 7    NRINVVVDNIFEYNVAH-NIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLTKHEV 66
            NR+ ++ DN+   +      I+ NE     ++ +  + K+  ++K A   EL +L   +V
Sbjct: 1251 NRVKLIPDNMETVSAPKIRAIYYNE-----AISKNPDLKEKHEYKQAYHKELQNLKDMKV 1310

Query: 67   FEPIVYTPKGVKP----VGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 126
            F+  V   +   P    V    +F +KRN       YKAR+V +G +Q       +TYS 
Sbjct: 1311 FDVDVKYSRSEIPDNLIVPTNTIFTKKRN-----GIYKARIVCRGDTQS-----PDTYSV 1370

Query: 127  V----VDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSN 186
            +    ++   ++  + +A   N+ M  +D+  A+LY  LE EIY        IP  ++  
Sbjct: 1371 ITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIY--------IPHPHDRR 1430

Query: 187  FRELCSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVY 246
                C +KL  +LYGLKQS + W +HL +YL     ++N   P ++  +++    +IAVY
Sbjct: 1431 ----CVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY--QTEDKNLMIAVY 1490

Query: 247  VDDLNIIGTPKE-LSKAIEYLKKEFEMKDLG--------KTKFCLDLQIEHLADGIFIHQ 306
            VDD  I  + ++ L + I  LK  FE+K  G             +DL        I +  
Sbjct: 1491 VDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTL 1550

Query: 307  STYTEKILKRF--YMDKAHPLNIP-MVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGA 366
             ++  ++ K++   + K    +IP M    +D KKD+ +  E  EE     +     +G 
Sbjct: 1551 KSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSE--EEFRQGVLKLQQLLGE 1610

Query: 367  LMYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKNVLRYL 387
            L Y+ +  R DI F+V  +AR  + P +R +  +  +++YL
Sbjct: 1611 LNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYL 1620

[Close]

BLAST of Cmc04g0108151 vs. ExPASy TrEMBL
Match: A0A438FGC5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2905 PE=4 SV=1)

HSP 1 Score: 617.8 bits (1592), Expect = 3.0e-173
Identity = 291/385 (75.58%), Postives = 339/385 (88.05%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 505 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 564

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 565 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 624

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 625 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 684

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 685 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 744

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 745 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 804

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 805 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 864

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSS+PT+RHWNG+K++LRYL
Sbjct: 865 NLLARYSSAPTRRHWNGIKHILRYL 889

[Close]

BLAST of Cmc04g0108151 vs. ExPASy TrEMBL
Match: A0A438ET65 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1)

HSP 1 Score: 617.1 bits (1590), Expect = 5.1e-173
Identity = 290/385 (75.32%), Postives = 339/385 (88.05%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDSFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLA+YSS+PT+RHWNG+K++LRYL
Sbjct: 878 NLLAKYSSAPTRRHWNGIKHILRYL 902

[Close]

BLAST of Cmc04g0108151 vs. ExPASy TrEMBL
Match: A0A438ETU3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 6.6e-173
Identity = 290/385 (75.32%), Postives = 339/385 (88.05%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 508 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 567

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 568 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 627

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 628 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 687

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 688 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDL 747

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 748 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 807

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYL+AIGALMYLAN TR DIAFSV
Sbjct: 808 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLNAIGALMYLANCTRPDIAFSV 867

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSS+PT+RHWNG+K++LRYL
Sbjct: 868 NLLARYSSAPTRRHWNGIKHILRYL 892

[Close]

BLAST of Cmc04g0108151 vs. ExPASy TrEMBL
Match: A0A438ETG9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1001 PE=4 SV=1)

HSP 1 Score: 616.3 bits (1588), Expect = 8.6e-173
Identity = 290/385 (75.32%), Postives = 338/385 (87.79%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVAFDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR G+DYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGVDYEETYSP 637

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLKE Y NNPICPC+FIKK + GF IIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPCIFIKKLETGFAIIAVYVDDL 757

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LKRFYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSSSPT+RHWNG+K++LRYL
Sbjct: 878 NLLARYSSSPTRRHWNGIKHILRYL 902

[Close]

BLAST of Cmc04g0108151 vs. ExPASy TrEMBL
Match: A0A438K4P3 (Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1)

HSP 1 Score: 613.2 bits (1580), Expect = 7.3e-172
Identity = 289/385 (75.06%), Postives = 338/385 (87.79%), Query Frame = 0


Query: 2   TGKRWNRINVVVDNIFEYNVAHNIIHENEDYEPKSVDECCNRKDWPKWKGAIQTELNSLT 61
           TG++W+R N+V++NIF + VA +II  +ED EP++V+EC +R DWPKWK AIQ ELNSLT
Sbjct: 518 TGEKWDRNNIVINNIFAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEAIQAELNSLT 577

Query: 62  KHEVFEPIVYTPKGVKPVGFKWVFVRKRNENNEVTRYKARLVAQGFSQRLGIDYEETYSP 121
           K EVF P+V TP+ VKPVG+KWVFVRKRNENNE+ RYKARLVAQGFSQR GIDYEETYSP
Sbjct: 578 KREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSP 637

Query: 122 VVDAITLRYLISLAVCENLDMHLMDVVTAYLYGSLENEIYMKIPKGFKIPESYNSNFREL 181
           V+DAIT R+LISLAV E LDM LMDV+TAYLYGS++N+IYMKIP+GFK+P++ N+  R +
Sbjct: 638 VMDAITFRFLISLAVSEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKPRSM 697

Query: 182 CSIKLQISLYGLKQSGRMWYNHLSEYLLKEVYQNNPICPCVFIKKSQLGFGIIAVYVDDL 241
            SIKLQ SLYGLKQSGRMWYN LSEYLLK+ Y NNPICPC+FIKKS+ GF IIAVYVDDL
Sbjct: 698 YSIKLQRSLYGLKQSGRMWYNRLSEYLLKKGYVNNPICPCIFIKKSETGFAIIAVYVDDL 757

Query: 242 NIIGTPKELSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYTEKILKRFYM 301
           N++GTP+EL++   YLKKEFEMKDLGKTKFCL LQIEH  +G+ +HQSTY +K+LK FYM
Sbjct: 758 NLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKCFYM 817

Query: 302 DKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRSDIAFSV 361
           DKAHPL+ PMVVRSLDVKKD FRP E +EELLGPEVPYLSAIGALMYLAN TR DIAFSV
Sbjct: 818 DKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSV 877

Query: 362 NLLARYSSSPTKRHWNGVKNVLRYL 387
           NLLARYSS+PT+RHWNG+K++LRYL
Sbjct: 878 NLLARYSSTPTRRHWNGIKHILRYL 902

[Close]

BLAST of Cmc04g0108151 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 179.9 bits (455), Expect = 4.0e-45
Identity = 116/358 (32.40%), Postives = 184/358 (51.40%), Query Frame = 0


Query: 33  EPKSVDECCNRKDWPKWKGAIQTELNSLTKHEVFEPIVYTPKGVKPVGFKWVFVRKRNEN 92
           EP + +E    K++  W GA+  E+ ++     +E I   P   KP+G KWV+  K N +
Sbjct: 85  EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWE-ICTLPPNKKPIGCKWVYKIKYNSD 144

Query: 93  NEVTRYKARLVAQGFSQRLGIDYEETYSPVVDAITLRYLISLAVCENLDMHLMDVVTAYL 152
             + RYKARLVA+G++Q+ GID+ ET+SPV    +++ +++++   N  +H +D+  A+L
Sbjct: 145 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 204

Query: 153 YGSLENEIYMKIPKGFKIPESYNSNFRELCSIKLQISLYGLKQSGRMWYNHLSEYLLKEV 212
            G L+ EIYMK+P G+   +  +     +C +K   S+YGLKQ+ R W+   S  L+   
Sbjct: 205 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKK--SIYGLKQASRQWFLKFSVTLIGFG 264

Query: 213 YQNNPICPCVFIKKSQLGFGIIAVYVDDLNII-GTPKELSKAIEYLKKEFEMKDLGKTKF 272
           +  +      F+K +   F  + VYVDD+ I       + +    LK  F+++DLG  K+
Sbjct: 265 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 324

Query: 273 CLDLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIPM---VVRSLDVKKDIFRPRED 332
            L L+I   A GI I Q  Y   +L    +    P ++PM   V  S     D    +  
Sbjct: 325 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK-- 384

Query: 333 NEELLGPEVPYLSAIGALMYLANNTRSDIAFSVNLLARYSSSPTKRHWNGVKNVLRYL 387
                     Y   IG LMYL   TR DI+F+VN L+++S +P   H   V  +L Y+
Sbjct: 385 ---------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYI 424

[Close]

BLAST of Cmc04g0108151 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-13
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 234 IAVYVDDLNIIGTPKE-LSKAIEYLKKEFEMKDLGKTKFCLDLQIEHLADGIFIHQSTYT 293
           + +YVDD+ + G+    L+  I  L   F MKDLG   + L +QI+    G+F+ Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 294 EKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNEELLGPEVP----YLSAIGALMY 353
           E+IL    M    P++ P+             P + N  +   + P    + S +GAL Y
Sbjct: 63  EQILNNAGMLDCKPMSTPL-------------PLKLNSSVSTAKYPDPSDFRSIVGALQY 122

Query: 354 LANNTRSDIAFSVNLLARYSSSPTKRHWNGVKNVLRYL 387
           L   TR DI+++VN++ +    PT   ++ +K VLRY+
Sbjct: 123 L-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 146

[Close]

BLAST of Cmc04g0108151 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-12
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 33  EPKSVDECCNRKDWPKWKGAIQTELNSLTKHEVFEPIVYTPKGVKPVGFKWVFVRKRNEN 92
           EPKSV      KD P W  A+Q EL++L++++ +  +V  P     +G KWVF  K + +
Sbjct: 27  EPKSV--IFALKD-PGWCQAMQEELDALSRNKTW-ILVPPPVNQNILGCKWVFKTKLHSD 86

Query: 93  NEVTRYKARLVAQGFSQRLGIDYEETYSPVVDAITLRYLISLA 136
             + R KARLVA+GF Q  GI + ETYSPVV   T+R ++++A
Sbjct: 87  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc04g0108151 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW59049.1	6.1e-173	75.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW50867.1	1.0e-172	75.32	Copia protein [Vitis vinifera]	[more]
RVW51062.1	1.4e-172	75.32	Copia protein [Vitis vinifera]	[more]
RVW51051.1	1.8e-172	75.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX16158.1	1.5e-171	75.06	Copia protein [Vitis vinifera]	[more]

BLAST of Cmc04g0108151 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.0e-63	38.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.9e-56	36.43	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.1e-47	32.65	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.4e-47	32.16	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P47024	3.5e-22	26.93	Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0108151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438FGC5	3.0e-173	75.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438ET65	5.1e-173	75.32	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_127 PE=4 SV=1	[more]
A0A438ETU3	6.6e-173	75.32	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_69 PE=4 SV=1	[more]
A0A438ETG9	8.6e-173	75.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438K4P3	7.3e-172	75.06	Copia protein OS=Vitis vinifera OX=29760 GN=GIP_114 PE=4 SV=1	[more]

BLAST of Cmc04g0108151 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.0e-45	32.40	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.2e-13	31.01	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	2.0e-12	42.72	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 69..311 e-value: 3.6E-60 score: 203.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 20..386
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 66..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0108151.1	Cmc04g0108151.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding