Cmc04g0108121 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0108121
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 27048073 .. 27048798 (-)
RNA-Seq Expression	Cmc04g0108121
Synteny	Cmc04g0108121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGTTTTGGCTGAAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATACAAGACAACGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCTAGGCAAGGCAAATGTGGTAGCTGATGCTTTTAGTAGAAAGGTATCACATTCAGCAGCACTTGTTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCGGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGGCGCCTCTGTGTGCCATCAGATAGTGCGATTAAAACAGAATTATTATCTAAGGCTCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACGTGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGACAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGA

mRNA sequence

ATGCGAGTTTTGGCTGAAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATACAAGACAACGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCTAGGCAAGGCAAATGTGGTAGCTGATGCTTTTAGTAGAAAGGTATCACATTCAGCAGCACTTGTTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCGGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGGCGCCTCTGTGTGCCATCAGATAGTGCGATTAAAACAGAATTATTATCTAAGGCTCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACGTGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGACAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGA

Coding sequence (CDS)

ATGCGAGTTTTGGCTGAAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATACAAGACAACGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCTAGGCAAGGCAAATGTGGTAGCTGATGCTTTTAGTAGAAAGGTATCACATTCAGCAGCACTTGTTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCGGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGGTTGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGGCGCCTCTGTGTGCCATCAGATAGTGCGATTAAAACAGAATTATTATCTAAGGCTCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACGTGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGACAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGA

Protein sequence

MRVLAEAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

Homology

[Close]

BLAST of Cmc04g0108121 vs. NCBI nr
Match: KAA0054231.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 454.1 bits (1167), Expect = 7.3e-124
Identity = 228/235 (97.02%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYHLGK
Sbjct: 1149 AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHLGK 1208

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQ TLRQRIID
Sbjct: 1209 ANVVADALSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQSTLRQRIID 1268

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAEAGQA+EFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM
Sbjct: 1269 AQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 1328

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVSKCLVC+QVKAPRQKPAGLLQPLSIPE
Sbjct: 1329 HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCRQVKAPRQKPAGLLQPLSIPE 1383

[Close]

BLAST of Cmc04g0108121 vs. NCBI nr
Match: KAA0059062.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 452.6 bits (1163), Expect = 2.1e-123
Identity = 226/235 (96.17%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 934  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 993

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 994  ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 1053

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSM
Sbjct: 1054 AQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAHSSPFSM 1113

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 1114 HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPE 1168

[Close]

BLAST of Cmc04g0108121 vs. NCBI nr
Match: KAA0062112.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 452.2 bits (1162), Expect = 2.8e-123
Identity = 225/235 (95.74%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 989  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 1048

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 1049 ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 1108

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELLS+AHSSPFSM
Sbjct: 1109 AQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSM 1168

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 1169 HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPE 1223

[Close]

BLAST of Cmc04g0108121 vs. NCBI nr
Match: KAA0037244.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 452.2 bits (1162), Expect = 2.8e-123
Identity = 226/235 (96.17%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 947  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 1006

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 1007 ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 1066

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAE GQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSM
Sbjct: 1067 AQSNDPYLVEKRGLAEVGQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAHSSPFSM 1126

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 1127 HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 1181

[Close]

BLAST of Cmc04g0108121 vs. NCBI nr
Match: KAA0057672.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 451.8 bits (1161), Expect = 3.6e-123
Identity = 224/235 (95.32%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7   AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
           AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 431 AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 490

Query: 67  ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
           ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 491 ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 550

Query: 127 ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
           A+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELL++AHSSPFSM
Sbjct: 551 AQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLAEAHSSPFSM 610

Query: 187 HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
           HPGSTKMYQDLKR+YWWRN+KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 611 HPGSTKMYQDLKRIYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 665

[Close]

BLAST of Cmc04g0108121 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.0e-20
Identity = 68/237 (28.69%), Postives = 116/237 (48.95%), Query Frame = 0


Query: 7   AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILY 66
           A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y
Sbjct: 758 AIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINY 817

Query: 67  HLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQ 126
             G AN +ADA SR       +V    P+ +D E   I          + Q+++    + 
Sbjct: 818 RPGSANHIADALSR-------IVDETEPIPKDSEDNSINF--------VNQISITDDFKN 877

Query: 127 RIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAH 186
           +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H
Sbjct: 878 QVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYH 937

Query: 187 SSPFSMHPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL 238
                +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Sbjct: 938 EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977

[Close]

BLAST of Cmc04g0108121 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.0e-20
Identity = 68/237 (28.69%), Postives = 116/237 (48.95%), Query Frame = 0


Query: 7   AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILY 66
           A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y
Sbjct: 758 AIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINY 817

Query: 67  HLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQ 126
             G AN +ADA SR       +V    P+ +D E   I          + Q+++    + 
Sbjct: 818 RPGSANHIADALSR-------IVDETEPIPKDSEDNSINF--------VNQISITDDFKN 877

Query: 127 RIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAH 186
           +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H
Sbjct: 878 QVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYH 937

Query: 187 SSPFSMHPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL 238
                +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Sbjct: 938 EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977

[Close]

BLAST of Cmc04g0108121 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.0e-20
Identity = 68/237 (28.69%), Postives = 116/237 (48.95%), Query Frame = 0


Query: 7   AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILY 66
           A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y
Sbjct: 758 AIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINY 817

Query: 67  HLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQ 126
             G AN +ADA SR       +V    P+ +D E   I          + Q+++    + 
Sbjct: 818 RPGSANHIADALSR-------IVDETEPIPKDSEDNSINF--------VNQISITDDFKN 877

Query: 127 RIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAH 186
           +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H
Sbjct: 878 QVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYH 937

Query: 187 SSPFSMHPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL 238
                +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Sbjct: 938 EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977

[Close]

BLAST of Cmc04g0108121 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.0e-20
Identity = 68/237 (28.69%), Postives = 116/237 (48.95%), Query Frame = 0


Query: 7   AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILY 66
           A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y
Sbjct: 758 AIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINY 817

Query: 67  HLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQ 126
             G AN +ADA SR       +V    P+ +D E   I          + Q+++    + 
Sbjct: 818 RPGSANHIADALSR-------IVDETEPIPKDSEDNSINF--------VNQISITDDFKN 877

Query: 127 RIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAH 186
           +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H
Sbjct: 878 QVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYH 937

Query: 187 SSPFSMHPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL 238
                +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Sbjct: 938 EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977

[Close]

BLAST of Cmc04g0108121 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.0e-20
Identity = 68/237 (28.69%), Postives = 116/237 (48.95%), Query Frame = 0


Query: 7   AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILY 66
           A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y
Sbjct: 758 AIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINY 817

Query: 67  HLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQ 126
             G AN +ADA SR       +V    P+ +D E   I          + Q+++    + 
Sbjct: 818 RPGSANHIADALSR-------IVDETEPIPKDSEDNSINF--------VNQISITDDFKN 877

Query: 127 RIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAH 186
           +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H
Sbjct: 878 QVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYH 937

Query: 187 SSPFSMHPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL 238
                +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Sbjct: 938 EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI 977

[Close]

BLAST of Cmc04g0108121 vs. ExPASy TrEMBL
Match: A0A5A7UL17 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001760 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.5e-124
Identity = 228/235 (97.02%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYHLGK
Sbjct: 1149 AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHLGK 1208

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQ TLRQRIID
Sbjct: 1209 ANVVADALSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQSTLRQRIID 1268

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAEAGQA+EFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM
Sbjct: 1269 AQSNDPYLVEKRGLAEAGQAIEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 1328

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVSKCLVC+QVKAPRQKPAGLLQPLSIPE
Sbjct: 1329 HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCRQVKAPRQKPAGLLQPLSIPE 1383

[Close]

BLAST of Cmc04g0108121 vs. ExPASy TrEMBL
Match: A0A5A7UT37 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1186G00020 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 226/235 (96.17%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 934  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 993

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 994  ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 1053

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSM
Sbjct: 1054 AQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAHSSPFSM 1113

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 1114 HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPE 1168

[Close]

BLAST of Cmc04g0108121 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.3e-123
Identity = 226/235 (96.17%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 947  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 1006

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 1007 ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 1066

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAE GQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSM
Sbjct: 1067 AQSNDPYLVEKRGLAEVGQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAHSSPFSM 1126

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 1127 HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 1181

[Close]

BLAST of Cmc04g0108121 vs. ExPASy TrEMBL
Match: A0A5A7V1N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004680 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.3e-123
Identity = 225/235 (95.74%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7    AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
            AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 989  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 1048

Query: 67   ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
            ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 1049 ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 1108

Query: 127  ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
            A+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELLS+AHSSPFSM
Sbjct: 1109 AQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSM 1168

Query: 187  HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
            HPGSTKMYQDLKRVYWWRN+KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 1169 HPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPE 1223

[Close]

BLAST of Cmc04g0108121 vs. ExPASy TrEMBL
Match: A0A5A7UP94 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold126G00190 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 224/235 (95.32%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 7   AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGK 66
           AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GK
Sbjct: 431 AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGK 490

Query: 67  ANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 126
           ANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID
Sbjct: 491 ANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIID 550

Query: 127 ARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSM 186
           A+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELL++AHSSPFSM
Sbjct: 551 AQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLAEAHSSPFSM 610

Query: 187 HPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 242
           HPGSTKMYQDLKR+YWWRN+KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Sbjct: 611 HPGSTKMYQDLKRIYWWRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE 665

The following BLAST results are available for this feature:

BLAST of Cmc04g0108121 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054231.1	7.3e-124	97.02	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059062.1	2.1e-123	96.17	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062112.1	2.8e-123	95.74	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037244.1	2.8e-123	96.17	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0057672.1	3.6e-123	95.32	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0108121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	6.0e-20	28.69	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	6.0e-20	28.69	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	6.0e-20	28.69	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	6.0e-20	28.69	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	6.0e-20	28.69	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0108121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UL17	3.5e-124	97.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7UT37	1.0e-123	96.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7T190	1.3e-123	96.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]
A0A5A7V1N3	1.3e-123	95.74	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89...	[more]
A0A5A7UP94	1.8e-123	95.32	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold126G00190 PE...	[more]

BLAST of Cmc04g0108121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 134..224 e-value: 2.4E-17 score: 64.9
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 5..89
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..89
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 7..78 e-value: 2.63898E-35 score: 120.29
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 7..56 e-value: 2.2E-15 score: 56.9
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 169..225 e-value: 3.9E-16 score: 58.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 5..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0108121.1	Cmc04g0108121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding