Cmc04g0108011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0108011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase domain-containing protein
Location	CMiso1.1chr04: 26881499 .. 26882221 (+)
RNA-Seq Expression	Cmc04g0108011
Synteny	Cmc04g0108011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGACTCGATCCAAAGGTGGTCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACGACGATTTCGACCAGAACTCATTTCTCAAATCGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCAGTAAGAAAGAAGAATGGCCAACTACGTGTTTGTGTCGATTTTCAAGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTTATGGATGGGTCGTCAGAATATAACCAGATTAGAATGGCTCTAGATGACGAGGAGAAAACAGCACTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCAGATTGAAAAATGCAGGTGCAACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGCTTGTACTCGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGCGAGACCTCGTGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCTAG

mRNA sequence

ATGTCTGGACTCGATCCAAAGGTGGTCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACGACGATTTCGACCAGAACTCATTTCTCAAATCGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCAGTAAGAAAGAAGAATGGCCAACTACGTGTTTGTGTCGATTTTCAAGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTTATGGATGGGTCGTCAGAATATAACCAGATTAGAATGGCTCTAGATGACGAGGAGAAAACAGCACTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCAGATTGAAAAATGCAGGTGCAACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGCTTGTACTCGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGCGAGACCTCGTGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCTAG

Coding sequence (CDS)

ATGTCTGGACTCGATCCAAAGGTGGTCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACGACGATTTCGACCAGAACTCATTTCTCAAATCGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCAGTAAGAAAGAAGAATGGCCAACTACGTGTTTGTGTCGATTTTCAAGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTTATGGATGGGTCGTCAGAATATAACCAGATTAGAATGGCTCTAGATGACGAGGAGAAAACAGCACTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCAGATTGAAAAATGCAGGTGCAACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGAAGAAATGCGATCACTTGAAAGACCTAAAGCTTGTACTCGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTTTTGGGATTTATAGCGAGACCTCGTGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCTAG

Protein sequence

MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

Homology

[Close]

BLAST of Cmc04g0108011 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 474.2 bits (1219), Expect = 6.8e-130
Identity = 231/240 (96.25%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1    MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1321 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1380

Query: 61   NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
            NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 1381 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1440

Query: 121  RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 1441 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 1500

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 1501 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 1560

[Close]

BLAST of Cmc04g0108011 vs. NCBI nr
Match: TYK02262.1 (uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 474.2 bits (1219), Expect = 6.8e-130
Identity = 231/240 (96.25%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 697 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 756

Query: 61  NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
           NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 757 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 816

Query: 121 RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 817 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 876

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 877 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 936

[Close]

BLAST of Cmc04g0108011 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 8.9e-130
Identity = 230/240 (95.83%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1    MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1343 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1402

Query: 61   NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
            NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 1403 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1462

Query: 121  RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 1463 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 1522

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 1523 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 1582

[Close]

BLAST of Cmc04g0108011 vs. NCBI nr
Match: TYK16275.1 (uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 8.9e-130
Identity = 230/240 (95.83%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 526 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 585

Query: 61  NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
           NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 586 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 645

Query: 121 RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 646 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 705

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 706 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 765

[Close]

BLAST of Cmc04g0108011 vs. NCBI nr
Match: KAA0052361.1 (uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 8.9e-130
Identity = 230/240 (95.83%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           MSGLDPKVVVHRLAIKPEHRPVKQAQ+RFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 651 MSGLDPKVVVHRLAIKPEHRPVKQAQQRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 710

Query: 61  NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
           N+VPVRKKNGQLRVCVDF DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 711 NVVPVRKKNGQLRVCVDFCDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 770

Query: 121 RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RMAL+DEEKTA RTPKGIYCYK+MPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 771 RMALEDEEKTAFRTPKGIYCYKIMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 830

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 831 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 890

[Close]

BLAST of Cmc04g0108011 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 69/213 (32.39%), Postives = 115/213 (53.99%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFR 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K A R P+G++ Y VMP+ 
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 241
             KC F  +  KF+G+    +G       ID +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0108011 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 69/213 (32.39%), Postives = 115/213 (53.99%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFR 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K A R P+G++ Y VMP+ 
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 241
             KC F  +  KF+G+    +G       ID +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0108011 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 69/213 (32.39%), Postives = 115/213 (53.99%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFR 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K A R P+G++ Y VMP+ 
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 241
             KC F  +  KF+G+    +G       ID +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0108011 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 69/213 (32.39%), Postives = 115/213 (53.99%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFR 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K A R P+G++ Y VMP+ 
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 241
             KC F  +  KF+G+    +G       ID +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0108011 vs. ExPASy Swiss-Prot
Match: P0CT37 (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 69/213 (32.39%), Postives = 115/213 (53.99%), Query Frame = 0


Query: 31  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPK 90
           P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     
Sbjct: 422 PGKMQAMNDEINQGLKSGIIRESK----AINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 481

Query: 91  DDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFR 150
           + +PLP++E ++    G    + +D  S Y+ IR+   DE K A R P+G++ Y VMP+ 
Sbjct: 482 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 541

Query: 151 LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMN 210
           +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N
Sbjct: 542 ISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIIN 601

Query: 211 PLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 241
             KC F  +  KF+G+    +G       ID +
Sbjct: 602 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0108011 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.3e-130
Identity = 231/240 (96.25%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 697 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 756

Query: 61  NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
           NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 757 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 816

Query: 121 RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 817 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 876

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 877 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 936

[Close]

BLAST of Cmc04g0108011 vs. ExPASy TrEMBL
Match: A0A5D3BIH8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001270 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.3e-130
Identity = 231/240 (96.25%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1    MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1321 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1380

Query: 61   NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
            NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 1381 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1440

Query: 121  RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV
Sbjct: 1441 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 1500

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 1501 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 1560

[Close]

BLAST of Cmc04g0108011 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.3e-130
Identity = 230/240 (95.83%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1    MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1343 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1402

Query: 61   NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
            NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 1403 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1462

Query: 121  RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 1463 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 1522

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 1523 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 1582

[Close]

BLAST of Cmc04g0108011 vs. ExPASy TrEMBL
Match: A0A5D3CXS1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00440 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.3e-130
Identity = 230/240 (95.83%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1   MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
           M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 526 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 585

Query: 61  NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
           NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 586 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 645

Query: 121 RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
           RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 646 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 705

Query: 181 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
           KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 706 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 765

[Close]

BLAST of Cmc04g0108011 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.3e-130
Identity = 230/240 (95.83%), Postives = 233/240 (97.08%), Query Frame = 0


Query: 1    MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 60
            M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA
Sbjct: 1273 MPGLDPKVAVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIA 1332

Query: 61   NIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQI 120
            NIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSS YNQI
Sbjct: 1333 NIVPVRKKNGQLRVCVDFRDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSGYNQI 1392

Query: 121  RMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVV 180
            RMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVV
Sbjct: 1393 RMALEDEEKTAFRTPKGIYCYKVMPFGLKNAGATYQRAMQRIFDDMLHKHVECYVDDLVV 1452

Query: 181  KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI 240
            KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Sbjct: 1453 KSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIVRHRGIEVDHSKIDAI 1512

The following BLAST results are available for this feature:

BLAST of Cmc04g0108011 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98225.1	6.8e-130	96.25	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]
TYK02262.1	6.8e-130	96.25	uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	8.9e-130	95.83	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
TYK16275.1	8.9e-130	95.83	uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa]	[more]
KAA0052361.1	8.9e-130	95.83	uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0108011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CT41	2.4e-29	32.39	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.4e-29	32.39	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	2.4e-29	32.39	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	2.4e-29	32.39	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT37	2.4e-29	32.39	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0108011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTY1	3.3e-130	96.25	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5D3BIH8	3.3e-130	96.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZU9	4.3e-130	95.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3CXS1	4.3e-130	95.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D1E5	4.3e-130	95.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]

BLAST of Cmc04g0108011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 65..224 e-value: 1.6E-21 score: 76.8
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 10..150 e-value: 1.3E-63 score: 216.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..240
None	No IPR available	PANTHER	PTHR24559:SF341	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 1..240
None	No IPR available	CDD	cd01647	RT_LTR	coord: 48..224 e-value: 1.76173E-81 score: 239.805
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 90..224 e-value: 1.3E-63 score: 216.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 8..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0108011.1	Cmc04g0108011.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity