Cmc04g0107971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0107971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 26779709 .. 26781160 (-)
RNA-Seq Expression	Cmc04g0107971
Synteny	Cmc04g0107971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGATTCCTTACGACTCGAACAACAAACCCAAATGAGAGATTCATTTTTATGGGAAACAGAGTCAAAGTTCCAGCTGAAGCTGTGGGAACCTATCGTTTAACTTTAGACACTGGACATCATTTAGACCTTTTTGATACCTTTTATGTTCCTTCTATTTCTCGTAATTTGATTTCCTTGTCAAAACTTGATACTTCAAGTTATTACTTTAAATTTGGAAATGAGTGTTTTAGTTTATTCAAACAGAACATTTTTATTGGTTCTGGTATTCTTTGTGATGACTTATATAAATTCAAGCTTGATAATGTTTTTGCTGAGAGCTTGTTAACTCTACATCATAATGTTGGTACTAAACGTGGTCAAACAAATGAATCGTCGGCTTACTTGTGGCATGAACATTTAGGTCACATATCCAAAGAAAGAATTAAAAGATTGATAAATAATGAAATTCTTCCAAATTTGGATTTTACTGACCTTGAAATTTGTGTGGATTGTATTAAAGGAAAACAAACAAAACACACAGTTAATAAAAAAGCTACAAGAAGCTCACAACTTCTTGAAATTATACACACGGATATTTGTGGGTCTTTTGATGTTCCATCTTTTGGTGGAGAAAAGTATTTTATCAGCTTTATTGATGATTTCTCACGTTATGTTTATATATATTTATTGCATGAGAAATCTCAAGCAATAGATGCCTTAAAAGTATTTATAAATGAAGTTGAAAGGCAATTAGATAGAAACGTGAAAATCTTAAGATCTAATAGAGGTGGTGAGTATTATGGAAAATATGACAACAATGGACGATGCCCCGGTCCCTTCGCTAAATTCCTAGAAAGCCATGGCATATGTGCTCAATACACAATGGCAGGAACACCACAACAAAATGGTGTTGCAGAAAGACGAAATCGTACATTAATGAATATGGTTAGAAGCATGTTAATTAATTCATCTTTACCTGTGTCCTTGTGGATGTATGCATTAAGAACCGCTCAATATTTATTAAACAGGGTTCCTAGTAAGTCAGTTCCAAATACACCTTTTGAACTGTGGACAGGAAGGAAACCTAATTTAAGACACCTACATGTTTGGGGTTGTCAAGTGGAAGTAAGAATTTATAATCCACATGAAAAGAAACTGGATTCAAGAACAACTAGTGGTTTCTTCATTGGTTATCTAGAAAAATCAAAAGGGTGTAGATTTTATTGTCCTAACCACAGTACGAAAATAGTTGAAACTGGAAATATAAGGTTCATTGAGAATGACATAATTAGTGGGAGTTTGAAACCACGTAAAGTGGAAATTCTTTCATCTATAACTTCTTCTCAAGTTGTTGTTCTTGTAGTTTACTATGTTAACAATCCACAAGAACAACAAATTAATGGTCAAACACCACATAATGATGTTGTAACAAATGAACCTGTAACTGAGGGACCACAAGAAATATAG

mRNA sequence

ATGCAGGGATTCCTTACGACTCGAACAACAAACCCAAATGAGAGATTCATTTTTATGGGAAACAGAGTCAAAGTTCCAGCTGAAGCTGTGGGAACCTATCGTTTAACTTTAGACACTGGACATCATTTAGACCTTTTTGATACCTTTTATGTTCCTTCTATTTCTCGTAATTTGATTTCCTTGTCAAAACTTGATACTTCAAGTTATTACTTTAAATTTGGAAATGAGTGTTTTAGTTTATTCAAACAGAACATTTTTATTGGTTCTGGTATTCTTTGTGATGACTTATATAAATTCAAGCTTGATAATGTTTTTGCTGAGAGCTTGTTAACTCTACATCATAATGTTGGTACTAAACGTGGTCAAACAAATGAATCGTCGGCTTACTTGTGGCATGAACATTTAGGTCACATATCCAAAGAAAGAATTAAAAGATTGATAAATAATGAAATTCTTCCAAATTTGGATTTTACTGACCTTGAAATTTGTGTGGATTGTATTAAAGGAAAACAAACAAAACACACAGTTAATAAAAAAGCTACAAGAAGCTCACAACTTCTTGAAATTATACACACGGATATTTGTGGGTCTTTTGATGTTCCATCTTTTGGTGGAGAAAAGTATTTTATCAGCTTTATTGATGATTTCTCACGTTATGTTTATATATATTTATTGCATGAGAAATCTCAAGCAATAGATGCCTTAAAAGTATTTATAAATGAAGTTGAAAGGCAATTAGATAGAAACGTGAAAATCTTAAGATCTAATAGAGGTGGTGAGTATTATGGAAAATATGACAACAATGGACGATGCCCCGGTCCCTTCGCTAAATTCCTAGAAAGCCATGGCATATGTGCTCAATACACAATGGCAGGAACACCACAACAAAATGGTGTTGCAGAAAGACGAAATCGTACATTAATGAATATGGTTAGAAGCATGTTAATTAATTCATCTTTACCTGTGTCCTTGTGGATGTATGCATTAAGAACCGCTCAATATTTATTAAACAGGGTTCCTAGTAAGTCAGTTCCAAATACACCTTTTGAACTGTGGACAGGAAGGAAACCTAATTTAAGACACCTACATGTTTGGGGTTGTCAAGTGGAAGTAAGAATTTATAATCCACATGAAAAGAAACTGGATTCAAGAACAACTAGTGGTTTCTTCATTGGTTATCTAGAAAAATCAAAAGGGTGTAGATTTTATTGTCCTAACCACAGTACGAAAATAGTTGAAACTGGAAATATAAGGTTCATTGAGAATGACATAATTAGTGGGAGTTTGAAACCACGTAAAGTGGAAATTCTTTCATCTATAACTTCTTCTCAAGTTGTTGTTCTTGTAGTTTACTATGTTAACAATCCACAAGAACAACAAATTAATGGTCAAACACCACATAATGATGTTGTAACAAATGAACCTGTAACTGAGGGACCACAAGAAATATAG

Coding sequence (CDS)

ATGCAGGGATTCCTTACGACTCGAACAACAAACCCAAATGAGAGATTCATTTTTATGGGAAACAGAGTCAAAGTTCCAGCTGAAGCTGTGGGAACCTATCGTTTAACTTTAGACACTGGACATCATTTAGACCTTTTTGATACCTTTTATGTTCCTTCTATTTCTCGTAATTTGATTTCCTTGTCAAAACTTGATACTTCAAGTTATTACTTTAAATTTGGAAATGAGTGTTTTAGTTTATTCAAACAGAACATTTTTATTGGTTCTGGTATTCTTTGTGATGACTTATATAAATTCAAGCTTGATAATGTTTTTGCTGAGAGCTTGTTAACTCTACATCATAATGTTGGTACTAAACGTGGTCAAACAAATGAATCGTCGGCTTACTTGTGGCATGAACATTTAGGTCACATATCCAAAGAAAGAATTAAAAGATTGATAAATAATGAAATTCTTCCAAATTTGGATTTTACTGACCTTGAAATTTGTGTGGATTGTATTAAAGGAAAACAAACAAAACACACAGTTAATAAAAAAGCTACAAGAAGCTCACAACTTCTTGAAATTATACACACGGATATTTGTGGGTCTTTTGATGTTCCATCTTTTGGTGGAGAAAAGTATTTTATCAGCTTTATTGATGATTTCTCACGTTATGTTTATATATATTTATTGCATGAGAAATCTCAAGCAATAGATGCCTTAAAAGTATTTATAAATGAAGTTGAAAGGCAATTAGATAGAAACGTGAAAATCTTAAGATCTAATAGAGGTGGTGAGTATTATGGAAAATATGACAACAATGGACGATGCCCCGGTCCCTTCGCTAAATTCCTAGAAAGCCATGGCATATGTGCTCAATACACAATGGCAGGAACACCACAACAAAATGGTGTTGCAGAAAGACGAAATCGTACATTAATGAATATGGTTAGAAGCATGTTAATTAATTCATCTTTACCTGTGTCCTTGTGGATGTATGCATTAAGAACCGCTCAATATTTATTAAACAGGGTTCCTAGTAAGTCAGTTCCAAATACACCTTTTGAACTGTGGACAGGAAGGAAACCTAATTTAAGACACCTACATGTTTGGGGTTGTCAAGTGGAAGTAAGAATTTATAATCCACATGAAAAGAAACTGGATTCAAGAACAACTAGTGGTTTCTTCATTGGTTATCTAGAAAAATCAAAAGGGTGTAGATTTTATTGTCCTAACCACAGTACGAAAATAGTTGAAACTGGAAATATAAGGTTCATTGAGAATGACATAATTAGTGGGAGTTTGAAACCACGTAAAGTGGAAATTCTTTCATCTATAACTTCTTCTCAAGTTGTTGTTCTTGTAGTTTACTATGTTAACAATCCACAAGAACAACAAATTAATGGTCAAACACCACATAATGATGTTGTAACAAATGAACCTGTAACTGAGGGACCACAAGAAATATAG

Protein sequence

MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLISLSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKRGQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKATRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFINEVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVAERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLRHLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFIENDIISGSLKPRKVEILSSITSSQVVVLVVYYVNNPQEQQINGQTPHNDVVTNEPVTEGPQEI

Homology

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BLAST of Cmc04g0107971 vs. NCBI nr
Match: KYP65984.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 736.1 bits (1899), Expect = 1.9e-208
Identity = 353/491 (71.89%), Postives = 408/491 (83.10%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGFLTTRTT PNE+F+FMGNRVKVP EAVGTYRL LDTGHHLDLF+T YVPSISRNL+S
Sbjct: 1   MQGFLTTRTTKPNEKFVFMGNRVKVPVEAVGTYRLILDTGHHLDLFETLYVPSISRNLVS 60

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD + Y  KFGN CFSL+K    IGSGILCD LYK  LDN+FAE+LLTLHHN+GTKR
Sbjct: 61  LSKLDVNGYSIKFGNGCFSLYKHTHLIGSGILCDGLYKLNLDNLFAETLLTLHHNIGTKR 120

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
           G  NE  AYLWH+ LGH+SKER++RL+ NEILP+LDFTDL +CVDCIKGKQTKHT  K A
Sbjct: 121 GLENERFAYLWHKRLGHVSKERLQRLVKNEILPDLDFTDLNVCVDCIKGKQTKHT-KKGA 180

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEIIHTDICG FDV SF  EKYFI+FIDD+SRY Y+YLLH+KSQAI+AL+++I 
Sbjct: 181 TRSTQLLEIIHTDICGPFDVNSFNKEKYFITFIDDYSRYGYVYLLHDKSQAINALEIYIE 240

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLD  VKI+RS+RGGEYYG+YD  G+ PGPFAKFLE  GICAQYTM GTPQQNGV+
Sbjct: 241 EVERQLDSKVKIIRSDRGGEYYGRYDERGQHPGPFAKFLEKRGICAQYTMPGTPQQNGVS 300

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ER NRTL++MVRSML NSSL +SLW YAL++A YLLNRVPSK+VP TPFELWTGRKP+LR
Sbjct: 301 ERHNRTLLDMVRSMLSNSSLLISLWTYALKSAMYLLNRVPSKAVPKTPFELWTGRKPSLR 360

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGC  ++R YNP EKKLD+RT +G+FIGY EKSKG RFYCPNH+T+I+ETGN RFI
Sbjct: 361 HLHVWGCPAKIRFYNPQEKKLDARTINGYFIGYPEKSKGYRFYCPNHTTRIIETGNARFI 420

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHNDVVT 480
           EN  +SGS  PRKVEI        L+ I++  VV  V+  +NN +EQQ N    HN+V  
Sbjct: 421 ENGEVSGSETPRKVEIQEMRVQVPLTCISNKVVVPQVIEPINNHEEQQTNDPITHNEVEV 480

Query: 481 NEPVTEGPQEI 484
           NEP+ E PQ+I
Sbjct: 481 NEPIVEEPQQI 490

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BLAST of Cmc04g0107971 vs. NCBI nr
Match: RZC12927.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A [Glycine soja] >RZC12928.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform B [Glycine soja])

HSP 1 Score: 719.2 bits (1855), Expect = 2.4e-203
Identity = 348/493 (70.59%), Postives = 407/493 (82.56%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGFLT +T +PNE+F+FMGNRVK P EAVGTYRL LDTGHHLDL +T YVPS+SRNL+S
Sbjct: 385 MQGFLTIQTISPNEKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVS 444

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD + Y F FGN CFSLFK N  IG+G+LCD LYK KLD ++ E++LTLHHNVGTKR
Sbjct: 445 LSKLDITGYSFNFGNGCFSLFKYNHLIGTGVLCDGLYKLKLDGLYVETVLTLHHNVGTKR 504

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
              NE SA+LWH+ LGHIS+ERI+RLI NEILP+LDFTDL ICVDCIKGKQTKHT  K A
Sbjct: 505 SLVNERSAFLWHKRLGHISRERIERLIKNEILPDLDFTDLNICVDCIKGKQTKHT-KKGA 564

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEI+HTDICG FDV SFG E+YFI+FIDD+SRY Y+YLLHEKSQA++AL++++N
Sbjct: 565 TRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYLLHEKSQAVNALEIYLN 624

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLDR VKI+RS+RGGEYYG+YD  G+ PGPFAK L+  GICAQYTM GTPQQNGV+
Sbjct: 625 EVERQLDRKVKIIRSDRGGEYYGRYDETGQHPGPFAKLLQKRGICAQYTMPGTPQQNGVS 684

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ERRNRTLM+MVRSMLINS+LPVSLWMYAL+TA YLLN VPSK+VP TPFELWT R P++R
Sbjct: 685 ERRNRTLMDMVRSMLINSTLPVSLWMYALKTAMYLLNMVPSKAVPKTPFELWTNRTPSMR 744

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGCQ E+RIYNP E+KLD+RT SG+FIGY EKSKG  FYCPNHST+IVETGN RFI
Sbjct: 745 HLHVWGCQAEIRIYNPQERKLDARTISGYFIGYPEKSKGYMFYCPNHSTRIVETGNARFI 804

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHND--V 480
           EN  ISGS  PR+VEI        L+  +SS+V+   V   N+ +E Q      HND  +
Sbjct: 805 ENGEISGSTVPREVEIKEVRVQVPLAFASSSKVITTSVTATNSNEEVQ------HNDEPM 864

Query: 481 VTNEPVTEGPQEI 484
           + NEP+ E PQE+
Sbjct: 865 IHNEPIMEEPQEV 870

[Close]

BLAST of Cmc04g0107971 vs. NCBI nr
Match: RZC25410.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja])

HSP 1 Score: 713.4 bits (1840), Expect = 1.3e-201
Identity = 346/493 (70.18%), Postives = 405/493 (82.15%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGFLT +T +PNE+F+FMGNRVK P EAVGTYRL LDTGHHLDL +T YVPS+SRNL+S
Sbjct: 374 MQGFLTIQTISPNEKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVS 433

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD + Y F FGN CFSLFK N  IG+G+LCD LYK KLD ++ E++LTLHHNVGTKR
Sbjct: 434 LSKLDITGYSFNFGNGCFSLFKYNHLIGTGVLCDGLYKLKLDGLYVETVLTLHHNVGTKR 493

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
              NE SA+LWH+ LGHIS ERI+RLI NEILP+LDFTDL ICVDCIKGKQTKHT  K A
Sbjct: 494 SLVNERSAFLWHKRLGHISGERIERLIKNEILPDLDFTDLNICVDCIKGKQTKHT-KKGA 553

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEI+HTDICG FDV SFG E+YFI+FIDD+SRY Y+YLLHEKSQA++AL++++N
Sbjct: 554 TRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYLLHEKSQAVNALEIYLN 613

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLDR VKI+RS+RGGEYY +YD  G+ P PFAK L+  GICAQYTM GTPQQNGV+
Sbjct: 614 EVERQLDRKVKIIRSDRGGEYYRRYDETGQHPSPFAKLLQKRGICAQYTMPGTPQQNGVS 673

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ERRN+TLM+MVRSMLINS+LPVSLWMYAL+TA YLLNRVPSK+VP TPFELWT R P++R
Sbjct: 674 ERRNKTLMDMVRSMLINSTLPVSLWMYALKTAMYLLNRVPSKAVPKTPFELWTNRTPSMR 733

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGCQ E+RIYNP E+KLD+RT SG+FIGY EKSKG  FYCPNHST+IVETGN RFI
Sbjct: 734 HLHVWGCQAEIRIYNPQERKLDARTISGYFIGYPEKSKGYMFYCPNHSTRIVETGNARFI 793

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHND--V 480
           EN  ISGS  PR+VEI        L+  +SS+V+   V   N+ +E Q      HND  +
Sbjct: 794 ENGEISGSTVPREVEIKEVRVQVPLAFASSSKVITTSVTATNSNEEVQ------HNDEPM 853

Query: 481 VTNEPVTEGPQEI 484
           + NEP+ E PQE+
Sbjct: 854 IHNEPIMEEPQEV 859

[Close]

BLAST of Cmc04g0107971 vs. NCBI nr
Match: KYP36562.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 707.2 bits (1824), Expect = 9.6e-200
Identity = 340/491 (69.25%), Postives = 402/491 (81.87%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGF T +T +PNE+F+FMGNRVKVP EAVGTYRL L+TGHHLDL +T YVPS+SRNL+S
Sbjct: 237 MQGFTTIQTISPNEKFVFMGNRVKVPVEAVGTYRLILNTGHHLDLLETLYVPSLSRNLVS 296

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD   Y F FGN CFSLFK+N  IG+GILCD LYK  LD ++ E+LLTLHHN+GTKR
Sbjct: 297 LSKLDAIGYSFTFGNGCFSLFKRNHLIGTGILCDGLYKLNLDGLYDETLLTLHHNIGTKR 356

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
              NE SA+LWH  LGHIS+ER++RLI NEILPNLDFTDL ICVDCIKGKQTKHT  K A
Sbjct: 357 SLVNERSAFLWHRRLGHISRERMERLIKNEILPNLDFTDLNICVDCIKGKQTKHT-KKGA 416

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEI+HTDICG FDV SFG EKYFI+FIDD+SRY Y+YLLHEKSQA+DAL++++N
Sbjct: 417 TRSTQLLEIVHTDICGPFDVNSFGKEKYFITFIDDYSRYGYVYLLHEKSQAVDALEIYLN 476

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLD+ VK++RS+RGGEYYG+Y+  G+ PGPFAK L+  GICAQYTM GTPQQNGV+
Sbjct: 477 EVERQLDKKVKVVRSDRGGEYYGRYNETGQHPGPFAKLLQKRGICAQYTMPGTPQQNGVS 536

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ERRNRTLM+MVRSML NS+LP+ LWMYAL+TA YLLNRVPSK+V  TPFELWTGR P+LR
Sbjct: 537 ERRNRTLMDMVRSMLSNSTLPIYLWMYALKTAMYLLNRVPSKAVSKTPFELWTGRTPSLR 596

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGCQ E+RIYNP EKKLD+RT SG+FIGY EKSKG  FYCPNH+ +IVETGN RFI
Sbjct: 597 HLHVWGCQAEIRIYNPQEKKLDARTISGYFIGYPEKSKGYMFYCPNHNMRIVETGNARFI 656

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHNDVVT 480
           EN  +SGS  P+KVE+        L+  + ++V V +    NN +E+Q N +     ++ 
Sbjct: 657 ENGEVSGSTIPQKVEVKEVRMQVPLTYASGNKVSVPLTVESNNNEEEQHNNE----PMIH 716

Query: 481 NEPVTEGPQEI 484
           NEP+ E PQEI
Sbjct: 717 NEPIVEQPQEI 722

[Close]

BLAST of Cmc04g0107971 vs. NCBI nr
Match: RZC09906.1 (B2 protein isoform D [Glycine soja])

HSP 1 Score: 684.9 bits (1766), Expect = 5.1e-193
Identity = 322/434 (74.19%), Postives = 373/434 (85.94%), Query Frame = 0


Query: 3   GFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLISLS 62
           GFLT +T +PN++F+FMGNRVK P EAVGTYRL LDTGHHLDL +T YVPS+SRNL+SLS
Sbjct: 298 GFLTIQTISPNKKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVSLS 357

Query: 63  KLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKRGQ 122
           KLD + Y F FGN CFSLFK N  IG+G+LCD LYK KLD ++ E++LTLHHNVGTKR  
Sbjct: 358 KLDITGYSFNFGNGCFSLFKYNHLIGTGVLCDGLYKLKLDGLYVETVLTLHHNVGTKRSL 417

Query: 123 TNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKATR 182
            NE SA+LWH+ LGHIS+ERI+RLI NEILP+LDFTDL ICVDCIKGKQTKHT  K ATR
Sbjct: 418 VNERSAFLWHKRLGHISRERIERLIKNEILPDLDFTDLNICVDCIKGKQTKHT-KKGATR 477

Query: 183 SSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFINEV 242
           S+QLLEI+HTDICG FDV SFG E+YFI+FIDD+SRY Y+YLLHEKSQA++AL++++NEV
Sbjct: 478 STQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYLLHEKSQAVNALEIYLNEV 537

Query: 243 ERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVAER 302
           ERQLDR VKI+RS+R GEYY +YD  G+  GPFAK L+  GICAQYTM GT QQNGV+ER
Sbjct: 538 ERQLDRKVKIIRSDRDGEYYRRYDETGQHSGPFAKLLQKRGICAQYTMPGTLQQNGVSER 597

Query: 303 RNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLRHL 362
           RNRTLM+MVRSMLINS+LPVSLWMYAL+TA YLLNRVPSK++P TPFELWT R P++RHL
Sbjct: 598 RNRTLMDMVRSMLINSTLPVSLWMYALKTAMYLLNRVPSKAIPKTPFELWTNRTPSMRHL 657

Query: 363 HVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFIEN 422
           HVWGCQ E+RIYNP E+KLDSRT SG+FIGY EKSKG  FYCPNHS +IVETGN RFIEN
Sbjct: 658 HVWGCQAEIRIYNPQERKLDSRTISGYFIGYPEKSKGYMFYCPNHSMRIVETGNARFIEN 717

Query: 423 DIISGSLKPRKVEI 437
             ISGS  PR+V+I
Sbjct: 718 GEISGSTVPREVKI 730

[Close]

BLAST of Cmc04g0107971 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.3e-60
Identity = 147/473 (31.08%), Postives = 237/473 (50.11%), Query Frame = 0


Query: 19  MGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLISLSKLDTSSYYFKFGNECF 78
           MGN        +G   +  + G  L L D  +VP +  NLIS   LD   Y   F N+ +
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 79  SLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKRGQTNESSAYLWHEHLGHI 138
            L K ++ I  G+    LY+   +              G      +E S  LWH+ +GH+
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEIC-----------QGELNAAQDEISVDLWHKRMGHM 443

Query: 139 SKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKATRSSQLLEIIHTDICGSF 198
           S++ ++ L    ++     T ++ C  C+ GKQ + +    + R   +L+++++D+CG  
Sbjct: 444 SEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPM 503

Query: 199 DVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFINEVERQLDRNVKILRSNRG 258
           ++ S GG KYF++FIDD SR +++Y+L  K Q     + F   VER+  R +K LRS+ G
Sbjct: 504 EIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNG 563

Query: 259 GEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVAERRNRTLMNMVRSMLINS 318
           GEY  +          F ++  SHGI  + T+ GTPQ NGVAER NRT++  VRSML  +
Sbjct: 564 GEYTSR---------EFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 623

Query: 319 SLPVSLWMYALRTAQYLLNRVPSKSVP-NTPFELWTGRKPNLRHLHVWGCQVEVRIYNPH 378
            LP S W  A++TA YL+NR PS  +    P  +WT ++ +  HL V+GC+    +    
Sbjct: 624 KLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQ 683

Query: 379 EKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFIENDIISGSLKPRKVEIL 438
             KLD ++    FIGY ++  G R + P    K++ + ++ F E+++ + +    KV+  
Sbjct: 684 RTKLDDKSIPCIFIGYGDEEFGYRLWDP-VKKKVIRSRDVVFRESEVRTAADMSEKVK-- 743

Query: 439 SSITSSQVVVLVVYYVNNP-------QEQQINGQTPHNDVVTNEPVTEGPQEI 484
           + I  +   V +    NNP        E    G+ P   +   E + EG +E+
Sbjct: 744 NGIIPN--FVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEV 771

[Close]

BLAST of Cmc04g0107971 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 164.1 bits (414), Expect = 4.0e-39
Identity = 111/375 (29.60%), Postives = 173/375 (46.13%), Query Frame = 0


Query: 31  GTYRLTLDTGHHLDLFDTFYVPSISRNLISLSKLDTSSYYFKFGNECFSLFKQNIFI--G 90
           G  RL  D  H + L D  +    + NL+S+ +L  +    +F     ++ K  + +   
Sbjct: 333 GIVRLRND--HEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKN 392

Query: 91  SGILCDDLYKFKLDNVFAESLLTLHHNVGTKRGQTNESSAYLWHEHLGHISKERI----- 150
           SG+    L    + N  A S+   H N           +  LWHE  GHIS  ++     
Sbjct: 393 SGM----LNNVPVINFQAYSINAKHKN-----------NFRLWHERFGHISDGKLLEIKR 452

Query: 151 KRLINNEILPNLDFTDLEICVDCIKGKQTKHTVN--KKATRSSQLLEIIHTDICGSFDVP 210
           K + +++ L N      EIC  C+ GKQ +      K  T   + L ++H+D+CG     
Sbjct: 453 KNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPV 512

Query: 211 SFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFINEVERQLDRNVKILRSNRGGEY 270
           +   + YF+ F+D F+ Y   YL+  KS      + F+ + E   +  V  L  + G EY
Sbjct: 513 TLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREY 572

Query: 271 YGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVAERRNRTLMNMVRSMLINSSLP 330
                          +F    GI    T+  TPQ NGV+ER  RT+    R+M+  + L 
Sbjct: 573 LS---------NEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLD 632

Query: 331 VSLWMYALRTAQYLLNRVPSKSV---PNTPFELWTGRKPNLRHLHVWGCQVEVRIYNPHE 390
            S W  A+ TA YL+NR+PS+++     TP+E+W  +KP L+HL V+G  V V I N  +
Sbjct: 633 KSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKN-KQ 680

Query: 391 KKLDSRTTSGFFIGY 394
            K D ++    F+GY
Sbjct: 693 GKFDDKSFKSIFVGY 680

[Close]

BLAST of Cmc04g0107971 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.4e-37
Identity = 110/358 (30.73%), Postives = 183/358 (51.12%), Query Frame = 0


Query: 43  LDLFDTFYVPSISRNLISLSKL-DTSSYYFKFGNECFSLFKQN--IFIGSGILCDDLYKF 102
           LDL    YVP+I +NLIS+ +L +T+    +F    F +   N  + +  G   D+LY++
Sbjct: 364 LDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 423

Query: 103 KLDNVFAESLLTLHHNVGTKRGQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFT- 162
            + +  A S+              ++++   WH  LGH S   +  +I+N  LP L+ + 
Sbjct: 424 PIASSQAVSMFA---------SPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSH 483

Query: 163 DLEICVDCIKGKQTKHTVNKKATRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSR 222
            L  C DC   K  K   +     SS+ LE I++D+  S  + S    +Y++ F+D F+R
Sbjct: 484 KLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSS-PILSIDNYRYYVIFVDHFTR 543

Query: 223 YVYIYLLHEKSQAIDALKVFINEVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKF 282
           Y ++Y L +KSQ  D   +F + VE +    +  L S+ GGE+    D           +
Sbjct: 544 YTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRD-----------Y 603

Query: 283 LESHGICAQYTMAGTPQQNGVAERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNR 342
           L  HGI    +   TP+ NG++ER++R ++ M  ++L ++S+P + W YA   A YL+NR
Sbjct: 604 LSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINR 663

Query: 343 VPSKSVP-NTPFELWTGRKPNLRHLHVWGCQVE--VRIYNPHEKKLDSRTTSGFFIGY 394
           +P+  +   +PF+   G+ PN   L V+GC     +R YN H  KL+ ++    F+GY
Sbjct: 664 LPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRH--KLEDKSKQCAFMGY 698

[Close]

BLAST of Cmc04g0107971 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-34
Identity = 107/405 (26.42%), Postives = 200/405 (49.38%), Query Frame = 0


Query: 25  VPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLISLSKL-DTSSYYFKFGNECFSLFKQ 84
           +P    G+  L+  +   L+L +  YVP+I +NLIS+ +L + +    +F    F +   
Sbjct: 368 IPISHTGSTSLSTKS-RPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDL 427

Query: 85  N--IFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKRGQTNESSAYLWHEHLGHISKE 144
           N  + +  G   D+LY++ + +    SL             +++++   WH  LGH +  
Sbjct: 428 NTGVPLLQGKTKDELYEWPIASSQPVSLFA---------SPSSKATHSSWHARLGHPAPS 487

Query: 145 RIKRLINNEILPNLDFTDLEI-CVDCIKGKQTKHTVNKKATRSSQLLEIIHTDICGSFDV 204
            +  +I+N  L  L+ +   + C DC+  K  K   ++    S++ LE I++D+  S  +
Sbjct: 488 ILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSS-PI 547

Query: 205 PSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFINEVERQLDRNVKILRSNRGGE 264
            S    +Y++ F+D F+RY ++Y L +KSQ  +    F N +E +    +    S+ GGE
Sbjct: 548 LSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGE 607

Query: 265 YYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVAERRNRTLMNMVRSMLINSSL 324
           +   ++           +   HGI    +   TP+ NG++ER++R ++    ++L ++S+
Sbjct: 608 FVALWE-----------YFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASI 667

Query: 325 PVSLWMYALRTAQYLLNRVPSKSVP-NTPFELWTGRKPNLRHLHVWGCQVE--VRIYNPH 384
           P + W YA   A YL+NR+P+  +   +PF+   G  PN   L V+GC     +R YN H
Sbjct: 668 PKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQH 727

Query: 385 EKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFIEN 423
             KLD ++    F+GY   ++         ++++  + ++RF EN
Sbjct: 728 --KLDDKSRQCVFLGY-SLTQSAYLCLHLQTSRLYISRHVRFDEN 747

[Close]

BLAST of Cmc04g0107971 vs. ExPASy Swiss-Prot
Match: Q12501 (Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-OR2 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.8e-27
Identity = 104/412 (25.24%), Postives = 174/412 (42.23%), Query Frame = 0


Query: 25  VPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLISLSKLDTSSYYFKFGNECFSLFKQN 84
           +P  A+G        G    +    + P+I+ +L+SLS+L   +    F           
Sbjct: 490 IPINAIGNLHFNFQNGTKTSI-KALHTPNIAYDLLSLSELTNQNITACFTRNTLER-SDG 549

Query: 85  IFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKRGQTNESSAYLWHEHLGHISKERIK 144
             +   +   D Y      +    +  L  N   K    N+    L H  LGH +   I+
Sbjct: 550 TVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQ 609

Query: 145 RLINNEILPNLDFTDLE-------ICVDCIKGKQTKHTVNK----KATRSSQLLEIIHTD 204
           + +    +  L  +D+E        C DC+ GK TKH   K    K   S +  + +HTD
Sbjct: 610 KSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTD 669

Query: 205 ICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQ--AIDALKVFINEVERQLDRNVK 264
           I G           YFISF D+ +R+ ++Y LH++ +   ++     +  ++ Q +  V 
Sbjct: 670 IFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVL 729

Query: 265 ILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVAERRNRTLMNMV 324
           +++ +RG EY  K            KF  + GI A YT     + +GVAER NRTL+N  
Sbjct: 730 VIQMDRGSEYTNK---------TLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDC 789

Query: 325 RSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLRHLHVWGCQVEV 384
           R++L  S LP  LW  A+  +  + N + S     +  +       ++  +  +G  V V
Sbjct: 790 RTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIV 849

Query: 385 RIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFIEND 424
             +NP + K+  R   G+ +     S G   Y P+   K V+T N   ++N+
Sbjct: 850 NNHNP-DSKIHPRGIPGYALHPSRNSYGYIIYLPS-LKKTVDTTNYVILQNN 888

[Close]

BLAST of Cmc04g0107971 vs. ExPASy TrEMBL
Match: A0A151TG02 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_012262 PE=4 SV=1)

HSP 1 Score: 736.1 bits (1899), Expect = 9.4e-209
Identity = 353/491 (71.89%), Postives = 408/491 (83.10%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGFLTTRTT PNE+F+FMGNRVKVP EAVGTYRL LDTGHHLDLF+T YVPSISRNL+S
Sbjct: 1   MQGFLTTRTTKPNEKFVFMGNRVKVPVEAVGTYRLILDTGHHLDLFETLYVPSISRNLVS 60

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD + Y  KFGN CFSL+K    IGSGILCD LYK  LDN+FAE+LLTLHHN+GTKR
Sbjct: 61  LSKLDVNGYSIKFGNGCFSLYKHTHLIGSGILCDGLYKLNLDNLFAETLLTLHHNIGTKR 120

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
           G  NE  AYLWH+ LGH+SKER++RL+ NEILP+LDFTDL +CVDCIKGKQTKHT  K A
Sbjct: 121 GLENERFAYLWHKRLGHVSKERLQRLVKNEILPDLDFTDLNVCVDCIKGKQTKHT-KKGA 180

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEIIHTDICG FDV SF  EKYFI+FIDD+SRY Y+YLLH+KSQAI+AL+++I 
Sbjct: 181 TRSTQLLEIIHTDICGPFDVNSFNKEKYFITFIDDYSRYGYVYLLHDKSQAINALEIYIE 240

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLD  VKI+RS+RGGEYYG+YD  G+ PGPFAKFLE  GICAQYTM GTPQQNGV+
Sbjct: 241 EVERQLDSKVKIIRSDRGGEYYGRYDERGQHPGPFAKFLEKRGICAQYTMPGTPQQNGVS 300

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ER NRTL++MVRSML NSSL +SLW YAL++A YLLNRVPSK+VP TPFELWTGRKP+LR
Sbjct: 301 ERHNRTLLDMVRSMLSNSSLLISLWTYALKSAMYLLNRVPSKAVPKTPFELWTGRKPSLR 360

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGC  ++R YNP EKKLD+RT +G+FIGY EKSKG RFYCPNH+T+I+ETGN RFI
Sbjct: 361 HLHVWGCPAKIRFYNPQEKKLDARTINGYFIGYPEKSKGYRFYCPNHTTRIIETGNARFI 420

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHNDVVT 480
           EN  +SGS  PRKVEI        L+ I++  VV  V+  +NN +EQQ N    HN+V  
Sbjct: 421 ENGEVSGSETPRKVEIQEMRVQVPLTCISNKVVVPQVIEPINNHEEQQTNDPITHNEVEV 480

Query: 481 NEPVTEGPQEI 484
           NEP+ E PQ+I
Sbjct: 481 NEPIVEEPQQI 490

[Close]

BLAST of Cmc04g0107971 vs. ExPASy TrEMBL
Match: A0A445KPR8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A OS=Glycine soja OX=3848 GN=D0Y65_012596 PE=4 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 1.2e-203
Identity = 348/493 (70.59%), Postives = 407/493 (82.56%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGFLT +T +PNE+F+FMGNRVK P EAVGTYRL LDTGHHLDL +T YVPS+SRNL+S
Sbjct: 385 MQGFLTIQTISPNEKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVS 444

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD + Y F FGN CFSLFK N  IG+G+LCD LYK KLD ++ E++LTLHHNVGTKR
Sbjct: 445 LSKLDITGYSFNFGNGCFSLFKYNHLIGTGVLCDGLYKLKLDGLYVETVLTLHHNVGTKR 504

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
              NE SA+LWH+ LGHIS+ERI+RLI NEILP+LDFTDL ICVDCIKGKQTKHT  K A
Sbjct: 505 SLVNERSAFLWHKRLGHISRERIERLIKNEILPDLDFTDLNICVDCIKGKQTKHT-KKGA 564

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEI+HTDICG FDV SFG E+YFI+FIDD+SRY Y+YLLHEKSQA++AL++++N
Sbjct: 565 TRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYLLHEKSQAVNALEIYLN 624

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLDR VKI+RS+RGGEYYG+YD  G+ PGPFAK L+  GICAQYTM GTPQQNGV+
Sbjct: 625 EVERQLDRKVKIIRSDRGGEYYGRYDETGQHPGPFAKLLQKRGICAQYTMPGTPQQNGVS 684

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ERRNRTLM+MVRSMLINS+LPVSLWMYAL+TA YLLN VPSK+VP TPFELWT R P++R
Sbjct: 685 ERRNRTLMDMVRSMLINSTLPVSLWMYALKTAMYLLNMVPSKAVPKTPFELWTNRTPSMR 744

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGCQ E+RIYNP E+KLD+RT SG+FIGY EKSKG  FYCPNHST+IVETGN RFI
Sbjct: 745 HLHVWGCQAEIRIYNPQERKLDARTISGYFIGYPEKSKGYMFYCPNHSTRIVETGNARFI 804

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHND--V 480
           EN  ISGS  PR+VEI        L+  +SS+V+   V   N+ +E Q      HND  +
Sbjct: 805 ENGEISGSTVPREVEIKEVRVQVPLAFASSSKVITTSVTATNSNEEVQ------HNDEPM 864

Query: 481 VTNEPVTEGPQEI 484
           + NEP+ E PQE+
Sbjct: 865 IHNEPIMEEPQEV 870

[Close]

BLAST of Cmc04g0107971 vs. ExPASy TrEMBL
Match: A0A445LQ30 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3848 GN=D0Y65_004205 PE=4 SV=1)

HSP 1 Score: 713.4 bits (1840), Expect = 6.5e-202
Identity = 346/493 (70.18%), Postives = 405/493 (82.15%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGFLT +T +PNE+F+FMGNRVK P EAVGTYRL LDTGHHLDL +T YVPS+SRNL+S
Sbjct: 374 MQGFLTIQTISPNEKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVS 433

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD + Y F FGN CFSLFK N  IG+G+LCD LYK KLD ++ E++LTLHHNVGTKR
Sbjct: 434 LSKLDITGYSFNFGNGCFSLFKYNHLIGTGVLCDGLYKLKLDGLYVETVLTLHHNVGTKR 493

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
              NE SA+LWH+ LGHIS ERI+RLI NEILP+LDFTDL ICVDCIKGKQTKHT  K A
Sbjct: 494 SLVNERSAFLWHKRLGHISGERIERLIKNEILPDLDFTDLNICVDCIKGKQTKHT-KKGA 553

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEI+HTDICG FDV SFG E+YFI+FIDD+SRY Y+YLLHEKSQA++AL++++N
Sbjct: 554 TRSTQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYLLHEKSQAVNALEIYLN 613

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLDR VKI+RS+RGGEYY +YD  G+ P PFAK L+  GICAQYTM GTPQQNGV+
Sbjct: 614 EVERQLDRKVKIIRSDRGGEYYRRYDETGQHPSPFAKLLQKRGICAQYTMPGTPQQNGVS 673

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ERRN+TLM+MVRSMLINS+LPVSLWMYAL+TA YLLNRVPSK+VP TPFELWT R P++R
Sbjct: 674 ERRNKTLMDMVRSMLINSTLPVSLWMYALKTAMYLLNRVPSKAVPKTPFELWTNRTPSMR 733

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGCQ E+RIYNP E+KLD+RT SG+FIGY EKSKG  FYCPNHST+IVETGN RFI
Sbjct: 734 HLHVWGCQAEIRIYNPQERKLDARTISGYFIGYPEKSKGYMFYCPNHSTRIVETGNARFI 793

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHND--V 480
           EN  ISGS  PR+VEI        L+  +SS+V+   V   N+ +E Q      HND  +
Sbjct: 794 ENGEISGSTVPREVEIKEVRVQVPLAFASSSKVITTSVTATNSNEEVQ------HNDEPM 853

Query: 481 VTNEPVTEGPQEI 484
           + NEP+ E PQE+
Sbjct: 854 IHNEPIMEEPQEV 859

[Close]

BLAST of Cmc04g0107971 vs. ExPASy TrEMBL
Match: A0A151R237 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_042301 PE=4 SV=1)

HSP 1 Score: 707.2 bits (1824), Expect = 4.7e-200
Identity = 340/491 (69.25%), Postives = 402/491 (81.87%), Query Frame = 0


Query: 1   MQGFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLIS 60
           MQGF T +T +PNE+F+FMGNRVKVP EAVGTYRL L+TGHHLDL +T YVPS+SRNL+S
Sbjct: 237 MQGFTTIQTISPNEKFVFMGNRVKVPVEAVGTYRLILNTGHHLDLLETLYVPSLSRNLVS 296

Query: 61  LSKLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKR 120
           LSKLD   Y F FGN CFSLFK+N  IG+GILCD LYK  LD ++ E+LLTLHHN+GTKR
Sbjct: 297 LSKLDAIGYSFTFGNGCFSLFKRNHLIGTGILCDGLYKLNLDGLYDETLLTLHHNIGTKR 356

Query: 121 GQTNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKA 180
              NE SA+LWH  LGHIS+ER++RLI NEILPNLDFTDL ICVDCIKGKQTKHT  K A
Sbjct: 357 SLVNERSAFLWHRRLGHISRERMERLIKNEILPNLDFTDLNICVDCIKGKQTKHT-KKGA 416

Query: 181 TRSSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFIN 240
           TRS+QLLEI+HTDICG FDV SFG EKYFI+FIDD+SRY Y+YLLHEKSQA+DAL++++N
Sbjct: 417 TRSTQLLEIVHTDICGPFDVNSFGKEKYFITFIDDYSRYGYVYLLHEKSQAVDALEIYLN 476

Query: 241 EVERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVA 300
           EVERQLD+ VK++RS+RGGEYYG+Y+  G+ PGPFAK L+  GICAQYTM GTPQQNGV+
Sbjct: 477 EVERQLDKKVKVVRSDRGGEYYGRYNETGQHPGPFAKLLQKRGICAQYTMPGTPQQNGVS 536

Query: 301 ERRNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLR 360
           ERRNRTLM+MVRSML NS+LP+ LWMYAL+TA YLLNRVPSK+V  TPFELWTGR P+LR
Sbjct: 537 ERRNRTLMDMVRSMLSNSTLPIYLWMYALKTAMYLLNRVPSKAVSKTPFELWTGRTPSLR 596

Query: 361 HLHVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFI 420
           HLHVWGCQ E+RIYNP EKKLD+RT SG+FIGY EKSKG  FYCPNH+ +IVETGN RFI
Sbjct: 597 HLHVWGCQAEIRIYNPQEKKLDARTISGYFIGYPEKSKGYMFYCPNHNMRIVETGNARFI 656

Query: 421 ENDIISGSLKPRKVEI--------LSSITSSQVVVLVVYYVNNPQEQQINGQTPHNDVVT 480
           EN  +SGS  P+KVE+        L+  + ++V V +    NN +E+Q N +     ++ 
Sbjct: 657 ENGEVSGSTIPQKVEVKEVRMQVPLTYASGNKVSVPLTVESNNNEEEQHNNE----PMIH 716

Query: 481 NEPVTEGPQEI 484
           NEP+ E PQEI
Sbjct: 717 NEPIVEQPQEI 722

[Close]

BLAST of Cmc04g0107971 vs. ExPASy TrEMBL
Match: A0A445KGB1 (B2 protein isoform D OS=Glycine soja OX=3848 GN=D0Y65_016300 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 2.5e-193
Identity = 322/434 (74.19%), Postives = 373/434 (85.94%), Query Frame = 0


Query: 3   GFLTTRTTNPNERFIFMGNRVKVPAEAVGTYRLTLDTGHHLDLFDTFYVPSISRNLISLS 62
           GFLT +T +PN++F+FMGNRVK P EAVGTYRL LDTGHHLDL +T YVPS+SRNL+SLS
Sbjct: 298 GFLTIQTISPNKKFVFMGNRVKAPVEAVGTYRLKLDTGHHLDLLETLYVPSLSRNLVSLS 357

Query: 63  KLDTSSYYFKFGNECFSLFKQNIFIGSGILCDDLYKFKLDNVFAESLLTLHHNVGTKRGQ 122
           KLD + Y F FGN CFSLFK N  IG+G+LCD LYK KLD ++ E++LTLHHNVGTKR  
Sbjct: 358 KLDITGYSFNFGNGCFSLFKYNHLIGTGVLCDGLYKLKLDGLYVETVLTLHHNVGTKRSL 417

Query: 123 TNESSAYLWHEHLGHISKERIKRLINNEILPNLDFTDLEICVDCIKGKQTKHTVNKKATR 182
            NE SA+LWH+ LGHIS+ERI+RLI NEILP+LDFTDL ICVDCIKGKQTKHT  K ATR
Sbjct: 418 VNERSAFLWHKRLGHISRERIERLIKNEILPDLDFTDLNICVDCIKGKQTKHT-KKGATR 477

Query: 183 SSQLLEIIHTDICGSFDVPSFGGEKYFISFIDDFSRYVYIYLLHEKSQAIDALKVFINEV 242
           S+QLLEI+HTDICG FDV SFG E+YFI+FIDD+SRY Y+YLLHEKSQA++AL++++NEV
Sbjct: 478 STQLLEIVHTDICGPFDVSSFGRERYFITFIDDYSRYGYVYLLHEKSQAVNALEIYLNEV 537

Query: 243 ERQLDRNVKILRSNRGGEYYGKYDNNGRCPGPFAKFLESHGICAQYTMAGTPQQNGVAER 302
           ERQLDR VKI+RS+R GEYY +YD  G+  GPFAK L+  GICAQYTM GT QQNGV+ER
Sbjct: 538 ERQLDRKVKIIRSDRDGEYYRRYDETGQHSGPFAKLLQKRGICAQYTMPGTLQQNGVSER 597

Query: 303 RNRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVPNTPFELWTGRKPNLRHL 362
           RNRTLM+MVRSMLINS+LPVSLWMYAL+TA YLLNRVPSK++P TPFELWT R P++RHL
Sbjct: 598 RNRTLMDMVRSMLINSTLPVSLWMYALKTAMYLLNRVPSKAIPKTPFELWTNRTPSMRHL 657

Query: 363 HVWGCQVEVRIYNPHEKKLDSRTTSGFFIGYLEKSKGCRFYCPNHSTKIVETGNIRFIEN 422
           HVWGCQ E+RIYNP E+KLDSRT SG+FIGY EKSKG  FYCPNHS +IVETGN RFIEN
Sbjct: 658 HVWGCQAEIRIYNPQERKLDSRTISGYFIGYPEKSKGYMFYCPNHSMRIVETGNARFIEN 717

Query: 423 DIISGSLKPRKVEI 437
             ISGS  PR+V+I
Sbjct: 718 GEISGSTVPREVKI 730

[Close]

BLAST of Cmc04g0107971 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.6e-05
Identity = 29/86 (33.72%), Postives = 43/86 (50.00%), Query Frame = 0


Query: 304 NRTLMNMVRSMLINSSLPVSLWMYALRTAQYLLNRVPSKSVP-NTPFELWTGRKPNLRHL 363
           NRT++  VRSML    LP +    A  TA +++N+ PS ++  + P E+W    P   +L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 364 HVWGCQVEVRIYNPHEKKLDSRTTSG 389
             +GC   V   +  E KL  R   G
Sbjct: 62  RRFGC---VAYIHCDEGKLKPRAKKG 84

The following BLAST results are available for this feature:

BLAST of Cmc04g0107971 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP65984.1	1.9e-208	71.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
RZC12927.1	2.4e-203	70.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A [Glycine s...	[more]
RZC25410.1	1.3e-201	70.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]	[more]
KYP36562.1	9.6e-200	69.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
RZC09906.1	5.1e-193	74.19	B2 protein isoform D [Glycine soja]	[more]

BLAST of Cmc04g0107971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.3e-60	31.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.0e-39	29.60	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	6.4e-37	30.73	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.3e-34	26.42	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12501	7.8e-27	25.24	Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc04g0107971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151TG02	9.4e-209	71.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A445KPR8	1.2e-203	70.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform A OS=Glycine...	[more]
A0A445LQ30	6.5e-202	70.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3...	[more]
A0A151R237	4.7e-200	69.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A445KGB1	2.5e-193	74.19	B2 protein isoform D OS=Glycine soja OX=3848 GN=D0Y65_016300 PE=4 SV=1	[more]

BLAST of Cmc04g0107971 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	6.6e-05	33.72	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 188..294 e-value: 1.8E-10 score: 41.0
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 182..356 score: 19.897837
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 176..373 e-value: 7.6E-41 score: 141.6
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 96..171 e-value: 2.7E-15 score: 56.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 460..483
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 49..408
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 182..350

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0107971.1	Cmc04g0107971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0009231	riboflavin biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0004491	methylmalonate-semialdehyde dehydrogenase (acylating) activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding