Cmc04g0107751 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0107751
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Protein TAPETUM DETERMINANT 1
Location	CMiso1.1chr04: 26252776 .. 26253651 (-)
RNA-Seq Expression	Cmc04g0107751
Synteny	Cmc04g0107751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGGTACTGTTGCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATTCCTTCTCCTTTTACTTTCTTCTTTCATTTCTACCAAAGGTACTTTTTTCTTTTCACATGCCTATTAATGATTTCTTCTATTTCACTCCTCAATTATTAATCAAACATCAAAACAACCCCTTTTTGTATTACAAAATAAGTTTGGAATGATTATGAAATCAAATTTGACTGTGGGTTGTTTTTGTGTTTATTTAATCTAATAATGTTTTAGTTATTTAAATTTCAACTTTGTGTTTAATTAGTAGCTTTCTTTTTACTTTTATGATTTCCTGTATCACAATGTCCGTATACTTTCATTTCTTTTAACATTTCTTAGTGTTGAAATATTTTAAATTATATATGTTTAACGCATGGAACATTCTATAAACTAAACTAAAGTTGTCATATACATATTATCAAATCTTATGAATTTCTTTAAAACACTATATAAAGTAGCAAAAGAATAATTAAACCTCAATGTTTGGAAATTATATGAATTAGGTGGAGCATTTGAAAAGAATTGCGATGGAAATTCGGTAGCAATAAGCCAAGGAGAAGGGGATCGAATGTTCAATGGAATCCCAACGTATAGGGTGCAGATAACAAATCAATGTTTTGGCAATTGCACTATATACGATCTGCATCTCAAATGTGGATCCTTCAGCTCTTCTAGCTCAATAAATCCTCGCATCTTCAAGAGACTCGCGGTCGACGATTGTCTTGTCAACAATGGATCACCAATTAACTACGGGGAAACTCTTTCTTTTCAATATGCTACTACGTATATGTTTCCTCTTTCCATTTCCTCTTTTAAATGTTAG

mRNA sequence

ATGGCGATGGGTACTGTTGCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATTCCTTCTCCTTTTACTTTCTTCTTTCATTTCTACCAAAGGTGGAGCATTTGAAAAGAATTGCGATGGAAATTCGGTAGCAATAAGCCAAGGAGAAGGGGATCGAATGTTCAATGGAATCCCAACGTATAGGGTGCAGATAACAAATCAATGTTTTGGCAATTGCACTATATACGATCTGCATCTCAAATGTGGATCCTTCAGCTCTTCTAGCTCAATAAATCCTCGCATCTTCAAGAGACTCGCGGTCGACGATTGTCTTGTCAACAATGGATCACCAATTAACTACGGGGAAACTCTTTCTTTTCAATATGCTACTACGTATATGTTTCCTCTTTCCATTTCCTCTTTTAAATGTTAG

Coding sequence (CDS)

ATGGCGATGGGTACTGTTGCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATTCCTTCTCCTTTTACTTTCTTCTTTCATTTCTACCAAAGGTGGAGCATTTGAAAAGAATTGCGATGGAAATTCGGTAGCAATAAGCCAAGGAGAAGGGGATCGAATGTTCAATGGAATCCCAACGTATAGGGTGCAGATAACAAATCAATGTTTTGGCAATTGCACTATATACGATCTGCATCTCAAATGTGGATCCTTCAGCTCTTCTAGCTCAATAAATCCTCGCATCTTCAAGAGACTCGCGGTCGACGATTGTCTTGTCAACAATGGATCACCAATTAACTACGGGGAAACTCTTTCTTTTCAATATGCTACTACGTATATGTTTCCTCTTTCCATTTCCTCTTTTAAATGTTAG

Protein sequence

MAMGTVANSSSSSSSSSSSSSSSSLFLLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC

Homology

[Close]

BLAST of Cmc04g0107751 vs. NCBI nr
Match: XP_010535235.1 (PREDICTED: protein TAPETUM DETERMINANT 1-like [Tarenaya hassleriana] >XP_010535236.1 PREDICTED: protein TAPETUM DETERMINANT 1-like [Tarenaya hassleriana])

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-26
Identity = 60/121 (49.59%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 26  FLLLLLSSFISTKGGAFE--KNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIY 85
           FL+ +   F +  G   E    C  N++ ISQ     + NGIPT+RV+ITNQC   C+I 
Sbjct: 8   FLIAIPVVFSTGAGKVMEGGGRCRKNNIVISQESTQPLPNGIPTFRVEITNQCVTGCSIS 67

Query: 86  DLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFK 145
           D+HL CG FSS++ I P +FKRL+ +DCLVN G P+ +G T+SFQYAT+++FPLS+SS +
Sbjct: 68  DIHLNCGWFSSATLIRPNVFKRLSYNDCLVNGGQPLEFGHTVSFQYATSFLFPLSVSSVQ 127

[Close]

BLAST of Cmc04g0107751 vs. NCBI nr
Match: XP_024005303.1 (protein TAPETUM DETERMINANT 1 isoform X2 [Eutrema salsugineum])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-25
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 44  KNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIF 103
           + C G+ + ++Q   + M NGIP YRV+ITNQC   C I  +H+ CG FSS+  INPR+F
Sbjct: 74  EKCKGSDIVVNQVATEPMPNGIPGYRVEITNQCMSGCKISRIHISCGWFSSAKLINPRLF 133

Query: 104 KRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
           KR+  DDCLVNNG P+ YG TLSFQYA T+ +PLS+S   C
Sbjct: 134 KRIHYDDCLVNNGKPLPYGSTLSFQYANTFPYPLSVSFVTC 174

[Close]

BLAST of Cmc04g0107751 vs. NCBI nr
Match: ESQ54814.1 (hypothetical protein EUTSA_v10027160mg, partial [Eutrema salsugineum])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-25
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 44  KNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIF 103
           + C G+ + ++Q   + M NGIP YRV+ITNQC   C I  +H+ CG FSS+  INPR+F
Sbjct: 14  EKCKGSDIVVNQVATEPMPNGIPGYRVEITNQCMSGCKISRIHISCGWFSSAKLINPRLF 73

Query: 104 KRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
           KR+  DDCLVNNG P+ YG TLSFQYA T+ +PLS+S   C
Sbjct: 74  KRIHYDDCLVNNGKPLPYGSTLSFQYANTFPYPLSVSFVTC 114

[Close]

BLAST of Cmc04g0107751 vs. NCBI nr
Match: XP_006413361.2 (protein TAPETUM DETERMINANT 1 isoform X1 [Eutrema salsugineum] >XP_024005302.1 protein TAPETUM DETERMINANT 1 isoform X1 [Eutrema salsugineum])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-25
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 44  KNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIF 103
           + C G+ + ++Q   + M NGIP YRV+ITNQC   C I  +H+ CG FSS+  INPR+F
Sbjct: 76  EKCKGSDIVVNQVATEPMPNGIPGYRVEITNQCMSGCKISRIHISCGWFSSAKLINPRLF 135

Query: 104 KRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
           KR+  DDCLVNNG P+ YG TLSFQYA T+ +PLS+S   C
Sbjct: 136 KRIHYDDCLVNNGKPLPYGSTLSFQYANTFPYPLSVSFVTC 176

[Close]

BLAST of Cmc04g0107751 vs. NCBI nr
Match: XP_004153503.1 (protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652243.1 protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_031736243.1 protein TAPETUM DETERMINANT 1 [Cucumis sativus] >KGN64432.1 hypothetical protein Csa_014163 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-24
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 27  LLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLH 86
           LLL   + I      + + C  + + I+QG    +  GIPTY V++ N C   C IY +H
Sbjct: 64  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIH 123

Query: 87  LKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
            KCG FSS+  INPR+FKRL  DDCLVN+G P+ YG TLSFQYA TY +PLS+SS  C
Sbjct: 124 FKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of Cmc04g0107751 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-23
Identity = 51/128 (39.84%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 17  SSSSSSSSLFLLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQC 76
           S + + ++L   LLLS  I        ++C  + + + QG  + + +G+P+Y V+I N C
Sbjct: 51  SINENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 110

Query: 77  FGNCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFP 136
             +C I ++H+ CG FSS   +NPR+F+RL  DDCLVN+G P+  G++LSFQYA ++ +P
Sbjct: 111 VSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYP 170

Query: 137 LSISSFKC 145
           LS++S  C
Sbjct: 171 LSVASVSC 178

[Close]

BLAST of Cmc04g0107751 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-22
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 14  SSSSSSSSSSSLFLLLLLSSFISTKGGAFE-----KNCDGNSVAISQGEGDRMFNGIPTY 73
           + +++SS S S   +LLLS        + E     + C    + ++Q   + M NGIP Y
Sbjct: 40  TKTTTSSPSISHRKMLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGY 99

Query: 74  RVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQ 133
            V+ITNQC   C I  +H+ CG FSS+  INPR+FKR+  DDCLVNNG P+ +G TLSF 
Sbjct: 100 MVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFH 159

Query: 134 YATTYMFPLSISSFKC 145
           YA T+ + LS++   C
Sbjct: 160 YANTFPYHLSVAFVTC 175

[Close]

BLAST of Cmc04g0107751 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-19
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 34  FISTKGGA----------FEKNCDG-NSVAISQGEGDRMFNGIPTYRVQITNQCFG---- 93
           F+S  GG            +  C G + +AI QG    + +G+P Y V + N+C G    
Sbjct: 92  FVSGSGGGGGGDGVRTRRVDDGCAGADDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGG 151

Query: 94  --NCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFP 145
              C I  +H++CG FSS S ++PR+F+RL  DDCL+N+G P+  GET+SF+Y  ++ + 
Sbjct: 152 DEECAIAGIHVRCGWFSSVSLVDPRVFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYK 211

[Close]

BLAST of Cmc04g0107751 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-17
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 10  SSSSSSSSSSSSSSSLFLLLLLSSFISTKGGAF------EKNCDGNSVAISQGEGDRMFN 69
           S  SSSS+  S + ++  LL +S   S  GG          +C   +V + Q   + + +
Sbjct: 29  SGESSSSAMQSKTLNMNKLLNISEDHSPNGGRHWMQRMQPDSCSEQNVVVYQNNAEHLPS 88

Query: 70  GIPTYRVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGE 129
           GIPTY V+I N C   CT+YD+H+ CG F+S+  ++P  F+R+  +DCLV  G  +   E
Sbjct: 89  GIPTYSVEIINVCTA-CTVYDVHISCGEFASAELVDPSQFQRIGFNDCLVKGGGRLGPSE 148

Query: 130 TLSFQYATTYMFPLSISSFKC 145
            +SFQY+ ++ +PL++++  C
Sbjct: 149 AVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of Cmc04g0107751 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 23  SSLFLLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTI 82
           SSL LLLL         GA    C+G S   +  +    +     +RV++ N+C   C I
Sbjct: 11  SSLALLLL-----QIGSGAI---CEGKSSEPAVRQTQVKWREGKKFRVEVMNKC-PMCPI 70

Query: 83  YDLHLKCGSFSSSSSINPRIFKRL--AVDDCLVNNGSPINYGETLSFQYATTYMF---PL 142
            +L LKC  F   S ++P   + L  +  +C+VN+G P++  +TLSF Y+ T+ F   PL
Sbjct: 71  INLRLKCQGF-PQSLVDPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFALRPL 126

Query: 143 SISSFKC 145
           S  SF+C
Sbjct: 131 S-WSFQC 126

[Close]

BLAST of Cmc04g0107751 vs. ExPASy TrEMBL
Match: V4MEA8 (Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10027160mg PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 44  KNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIF 103
           + C G+ + ++Q   + M NGIP YRV+ITNQC   C I  +H+ CG FSS+  INPR+F
Sbjct: 14  EKCKGSDIVVNQVATEPMPNGIPGYRVEITNQCMSGCKISRIHISCGWFSSAKLINPRLF 73

Query: 104 KRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
           KR+  DDCLVNNG P+ YG TLSFQYA T+ +PLS+S   C
Sbjct: 74  KRIHYDDCLVNNGKPLPYGSTLSFQYANTFPYPLSVSFVTC 114

[Close]

BLAST of Cmc04g0107751 vs. ExPASy TrEMBL
Match: A0A1S3B0P8 (protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.6e-25
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 27  LLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLH 86
           LLL   + I      + + C  + + I+QG    +  GIPTY V++ N C   C IY +H
Sbjct: 64  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIH 123

Query: 87  LKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
            KCG FSS+  INPR+FKRL  DDCLVN+G P+ YG TLSFQYA TY +PLS+SS  C
Sbjct: 124 FKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of Cmc04g0107751 vs. ExPASy TrEMBL
Match: A0A5A7UPF3 (Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001940 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.6e-25
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 27  LLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLH 86
           LLL   + I      + + C  + + I+QG    +  GIPTY V++ N C   C IY +H
Sbjct: 64  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIH 123

Query: 87  LKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
            KCG FSS+  INPR+FKRL  DDCLVN+G P+ YG TLSFQYA TY +PLS+SS  C
Sbjct: 124 FKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of Cmc04g0107751 vs. ExPASy TrEMBL
Match: A0A0A0LUG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.6e-25
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 27  LLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLH 86
           LLL   + I      + + C  + + I+QG    +  GIPTY V++ N C   C IY +H
Sbjct: 64  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIH 123

Query: 87  LKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
            KCG FSS+  INPR+FKRL  DDCLVN+G P+ YG TLSFQYA TY +PLS+SS  C
Sbjct: 124 FKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of Cmc04g0107751 vs. ExPASy TrEMBL
Match: A0A6J1KH78 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495228 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 27  LLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTIYDLH 86
           LLL   + I      + + C  + + I+QG    +  GIPTY V++ N C   C IY +H
Sbjct: 62  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 121

Query: 87  LKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLSISSFKC 145
            KCG FSS+  INPR+FKRL  DDCLVN+G P+ YG TLSFQYA TY +PLS+SS  C
Sbjct: 122 FKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 179

[Close]

BLAST of Cmc04g0107751 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-24
Identity = 51/128 (39.84%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 17  SSSSSSSSLFLLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQC 76
           S + + ++L   LLLS  I        ++C  + + + QG  + + +G+P+Y V+I N C
Sbjct: 51  SINENRTALSRKLLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 110

Query: 77  FGNCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFP 136
             +C I ++H+ CG FSS   +NPR+F+RL  DDCLVN+G P+  G++LSFQYA ++ +P
Sbjct: 111 VSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYP 170

Query: 137 LSISSFKC 145
           LS++S  C
Sbjct: 171 LSVASVSC 178

[Close]

BLAST of Cmc04g0107751 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 107.8 bits (268), Expect = 7.2e-24
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 14  SSSSSSSSSSSLFLLLLLSSFISTKGGAFE-----KNCDGNSVAISQGEGDRMFNGIPTY 73
           + +++SS S S   +LLLS        + E     + C    + ++Q   + M NGIP Y
Sbjct: 40  TKTTTSSPSISHRKMLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGY 99

Query: 74  RVQITNQCFGNCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQ 133
            V+ITNQC   C I  +H+ CG FSS+  INPR+FKR+  DDCLVNNG P+ +G TLSF 
Sbjct: 100 MVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFH 159

Query: 134 YATTYMFPLSISSFKC 145
           YA T+ + LS++   C
Sbjct: 160 YANTFPYHLSVAFVTC 175

[Close]

BLAST of Cmc04g0107751 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 23  SSLFLLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFGNCTI 82
           SSL LLLL         GA    C+G S   +  +    +     +RV++ N+C   C I
Sbjct: 11  SSLALLLL-----QIGSGAI---CEGKSSEPAVRQTQVKWREGKKFRVEVMNKC-PMCPI 70

Query: 83  YDLHLKCGSFSSSSSINPRIFKRL--AVDDCLVNNGSPINYGETLSFQYATTYMF---PL 142
            +L LKC  F   S ++P   + L  +  +C+VN+G P++  +TLSF Y+ T+ F   PL
Sbjct: 71  INLRLKCQGF-PQSLVDPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFALRPL 126

Query: 143 SISSFKC 145
           S  SF+C
Sbjct: 131 S-WSFQC 126

[Close]

BLAST of Cmc04g0107751 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 33/121 (27.27%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 19  SSSSSSLFLLLLLSSFISTKGGAFEKNCDGNSVAISQGEGDRMFNGIPTYRVQITNQCFG 78
           +S++  L  L+L  +F++   G    +C  NS+++ Q +  ++    P + V++TN C  
Sbjct: 2   ASNACKLLCLVLFLAFVNQGYG----DCSLNSLSVKQSKTGKLVQNKPEWEVRVTNPC-N 61

Query: 79  NCTIYDLHLKCGSFSSSSSINPRIFKRLAVDDCLVNNGSPINYGETLSFQYATTYMFPLS 138
           NC   +  L C  F+S + I+  +  + + D CLVN G  I     + F+Y     F L 
Sbjct: 62  NCKFQNTELLCVGFNSVTPIDTSLLLK-SGDACLVNAGKFIVPHVDIVFKYVWDTSFDLK 116

Query: 139 I 140
           +
Sbjct: 122 V 116

The following BLAST results are available for this feature:

BLAST of Cmc04g0107751 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010535235.1	7.2e-26	49.59	PREDICTED: protein TAPETUM DETERMINANT 1-like [Tarenaya hassleriana] >XP_0105352...	[more]
XP_024005303.1	2.1e-25	54.46	protein TAPETUM DETERMINANT 1 isoform X2 [Eutrema salsugineum]	[more]
ESQ54814.1	2.1e-25	54.46	hypothetical protein EUTSA_v10027160mg, partial [Eutrema salsugineum]	[more]
XP_006413361.2	2.1e-25	54.46	protein TAPETUM DETERMINANT 1 isoform X1 [Eutrema salsugineum] >XP_024005302.1 p...	[more]
XP_004153503.1	1.4e-24	50.00	protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 protein TAPETUM ...	[more]

BLAST of Cmc04g0107751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3T1	5.9e-23	39.84	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
Q6TLJ2	1.0e-22	42.65	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
Q2QR54	6.8e-19	37.50	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
Q8S6P9	2.8e-17	34.75	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
A8MS78	5.0e-06	34.65	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Cmc04g0107751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
V4MEA8	1.0e-25	54.46	Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v100...	[more]
A0A1S3B0P8	6.6e-25	50.00	protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1	[more]
A0A5A7UPF3	6.6e-25	50.00	Protein TAPETUM DETERMINANT 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0LUG9	6.6e-25	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1	[more]
A0A6J1KH78	8.6e-25	50.00	protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111495228 P...	[more]

BLAST of Cmc04g0107751 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32583.1	4.2e-24	39.84	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G24972.1	7.2e-24	42.65	tapetum determinant 1	[more]
AT1G05835.1	3.6e-07	34.65	PHD finger protein	[more]
AT4G32110.1	1.5e-05	27.27	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33184:SF67	PROTEIN TAPETUM DETERMINANT 1	coord: 35..144
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 35..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0107751.1	Cmc04g0107751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process