Cmc04g0105471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0105471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribosomal protein
Location	CMiso1.1chr04: 23554452 .. 23557873 (+)
RNA-Seq Expression	Cmc04g0105471
Synteny	Cmc04g0105471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAAAAGGGCAAAATTAATGGCCACAAAAATTACAACCATCCAAACGAACAAAATGGCCCCATTTCTACTTCTTATCATCTCCACAATGTATGGATAGAGAGACCCATTTCCATTTCCAAATCCAAATCCAAATCCAAAACCCCAACTTCATGAGGTAGAAGAAGAAGAACATCCCAACTTCACTCTCCATCAATGGCAGCCTGTACTTCCACTCCTCCTTCTTCCCTAATGCTCACTTCTGCCTCTTCTTCTGTACCTCCCCCCCAGGACCTCGCTTCCTCCATCGTCTCTTTCAAGGGCAAACCACAAATTCCCACCATCAAATCCTTCTCTTCTTCTAACTTTCTGTGCAGATCTAGGAGATCAGCCGATTGGGTATTTCTTAACTTTCAGAGACGAGCGAGGCAGCATGTGATCGTTGCAGCTCTTGCCGCTGAAGCGAATGTCGCGGAGGTGGAAGCCGAGGAAGAGGAAGCGGTGGCCGCGGCGGCCACGGCTACTGCGCCTAAACCCAAGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGGGTATGTTCCAAAATTATTTTCATGGCTACTGTTCGATTTGTTTTTTCGATTTGGGTCTGATGATTGGATTGCGGGTCGTGTTCTGTTTCATGGGTTGTGCTTGGAGGAGCTTGTTTTTCAAGCTTAGTACTGGAGGGCCTTTAATGATCATTTCGGTGGACTATTGGCTTCATTTTCCATGTCGTTATTTCATTGTTGATGTCTGAATTCAATTTGTTGCGTGATATGTCAGAGGAGATCAAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTCACGACAGCAATATCTCTGCTCAAGGAAATGAGTAGCACAAAGTTTGTAGAATCAGCTGAAGCTCATTTCCGGCTCAACATTGATCCGAAATACAATGATCAACAGCTGAGAGCAACTGTGAGTTTTGTTTTATGATCCCTTTAACTGTTAAGGGAAGTTGTAACTTATAAAGAATTTGGACATCATTACGTTATTTATTGTTTGAATGCTTTTATGCAGGTAAATTTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTAGTTACTAGTTACTTTTAATGCTTGATCGACTCTGTCTCTCTCAAACTATGCTATATGTTATTACATTTTAACTAAATCCACCAAGTGGAGTCTCTGTCTGTGGCTAAGGCCTTGTTTGAGAGTTGGGTTTGAAACAGTTCTATGTTTTTTTTTTTTTAACAATAAGTAGTGTAAATGTGTTCCAATAACTATTTCCAAAACCTTTTTTTCTCTACACTGATGACTTGATTTTTCAAATAAATGAAAAATCAATCACGAATGATACTAATCTTTACATTCCCTTTGATCACTGTTCTTAAAAACAGTTTTGAAAATAGTTTTATGATCAAGAAACTTTTTGGAGTTGTCTTCATGTTCAGTTCTAAGCTAAGTTTGGGTTGATTGTACCATAATTTGAAGTTTGCACCCTCGAGTTGAGGTCCCCATGAATCTAGAATAGGGTAAAGTTCAGTCTTGTGGCCTTTGATCTTGGTCGAACTGAATACTAGGTTTTTATGAATCTAGATTCCTTTATGCACAATTTGAAGGTCGCACCCTCGAGTTCGGCCCTAGGAGTAAAGTTGGAACGAGTTGTTAACCCTGCTATTTGTTTAGAACAAGGAGTTCATGGGCCCCACAACTAAAAATCAATTTCATGACTTATTAACTTCTTATGGGCCACATGCCTAATCAACTCCACAGACTATACAACTCAGCTCTGTGCCCCAATAGTTGCTTGTTAAAAGGATTTTACTGTTTAGGGTGTGATCCTAAAAAGTTCAAAGAAATACACAGGTGAGAGATTCGATGAAGCAAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTATTGCTTAGACCGCTTTACTTCAATCATTATTTCAATTATCTTTTGAGGTTTTTATAACCTTCCGAAAATATAAATTGTTTTCCTGAACAAGTTGCAAACTTTAAAAGATTAATTATATGGTTAGGATTGCACTGCTTATTGCTGCAGAAAGAAATAAGAAAGCGGATTTATTGAACCATTTTTGTCATAGATATACTTCCTAGATTTAGTCGATTTAAGTCCTTGCCCCATGGCTGGGGCCAAATTTTAGCCCGTTCTTAAAATTGATAAAGTATCTATGCTAAGTGTTTTCTGGCCCTGTCTACTATTTATCGTTGATGTCGATTGCCGATTACCTGTATTACTAAGAATAGTAAGTCAATATAGTTGATTTCCATATTTGAGTCTTCTCTGCTCATTTCAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGGCTGATGCCAAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGTATCAATGATCTTCTTCCTCTACCTGCATTGCATCCAGATTTCATATCTATTGATTAGAAAAATAAATTTAAGAATGTAGTTGAACCATCGGGCATCACTGATTTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCATTTACCGTTTGGAAAAGCCAACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAGTATGTTCTTCCCTTCTCTCTGTAGCTGTTAGTCTCTAGAGACTGGTCTCACTCATTTTTTATAAATCATTTTCTTCAACTCTGACAGAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGTGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGATATGCTGGACTTCAAACTTCCCTCGAGCGCTTGACGATAACAGACCTGTAAATTCCTTCTGTTTGTTGAATCAGCCTCAGGTGGATCCACTGGATTATAATGATGCCCAAATGTGAGCAGCATTGGAACCAATATGATAGAAGAAACTAGGAAGAAGAGCGAGGAGACATCAGATAATAATGATTACACAGCAACAGGCAATACTGCATAGTCTTCTATACTGGCTCACTTTGTATTGATGGTGTTAAGTTCTTATCGATCTACTACACTTTGATTGACCTCTTGGGTTTTAAGGGGAAAAAATGATAAATGTACTGAATTGTATTGACCAGTTGCTGCTCTTTTCCGTGGCACATTTCGAAAGTGGTTGTTCTTGTTGGTTCTGTCATTAATGGTCATTTGCTAATACAGTTCTATCGATCTAAGTTACATAATTTCATATTTTGACATGCTTATATGGATGACACATGAGATC

mRNA sequence

AAGAAAAAAGGGCAAAATTAATGGCCACAAAAATTACAACCATCCAAACGAACAAAATGGCCCCATTTCTACTTCTTATCATCTCCACAATGTATGGATAGAGAGACCCATTTCCATTTCCAAATCCAAATCCAAATCCAAAACCCCAACTTCATGAGGTAGAAGAAGAAGAACATCCCAACTTCACTCTCCATCAATGGCAGCCTGTACTTCCACTCCTCCTTCTTCCCTAATGCTCACTTCTGCCTCTTCTTCTGTACCTCCCCCCCAGGACCTCGCTTCCTCCATCGTCTCTTTCAAGGGCAAACCACAAATTCCCACCATCAAATCCTTCTCTTCTTCTAACTTTCTGTGCAGATCTAGGAGATCAGCCGATTGGGTATTTCTTAACTTTCAGAGACGAGCGAGGCAGCATGTGATCGTTGCAGCTCTTGCCGCTGAAGCGAATGTCGCGGAGGTGGAAGCCGAGGAAGAGGAAGCGGTGGCCGCGGCGGCCACGGCTACTGCGCCTAAACCCAAGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGGAGGAGATCAAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTCACGACAGCAATATCTCTGCTCAAGGAAATGAGTAGCACAAAGTTTGTAGAATCAGCTGAAGCTCATTTCCGGCTCAACATTGATCCGAAATACAATGATCAACAGCTGAGAGCAACTGTAAATTTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTGAGAGATTCGATGAAGCAAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGGCTGATGCCAAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCATTTACCGTTTGGAAAAGCCAACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGTGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGATATGCTGGACTTCAAACTTCCCTCGAGCGCTTGACGATAACAGACCTGTAAATTCCTTCTGTTTGTTGAATCAGCCTCAGGTGGATCCACTGGATTATAATGATGCCCAAATGTGAGCAGCATTGGAACCAATATGATAGAAGAAACTAGGAAGAAGAGCGAGGAGACATCAGATAATAATGATTACACAGCAACAGGCAATACTGCATAGTCTTCTATACTGGCTCACTTTGTATTGATGGTGTTAAGTTCTTATCGATCTACTACACTTTGATTGACCTCTTGGGTTTTAAGGGGAAAAAATGATAAATGTACTGAATTGTATTGACCAGTTGCTGCTCTTTTCCGTGGCACATTTCGAAAGTGGTTGTTCTTGTTGGTTCTGTCATTAATGGTCATTTGCTAATACAGTTCTATCGATCTAAGTTACATAATTTCATATTTTGACATGCTTATATGGATGACACATGAGATC

Coding sequence (CDS)

ATGGCAGCCTGTACTTCCACTCCTCCTTCTTCCCTAATGCTCACTTCTGCCTCTTCTTCTGTACCTCCCCCCCAGGACCTCGCTTCCTCCATCGTCTCTTTCAAGGGCAAACCACAAATTCCCACCATCAAATCCTTCTCTTCTTCTAACTTTCTGTGCAGATCTAGGAGATCAGCCGATTGGGTATTTCTTAACTTTCAGAGACGAGCGAGGCAGCATGTGATCGTTGCAGCTCTTGCCGCTGAAGCGAATGTCGCGGAGGTGGAAGCCGAGGAAGAGGAAGCGGTGGCCGCGGCGGCCACGGCTACTGCGCCTAAACCCAAGAAGGGGAAAGCCGCCTTGCCCCTTAAAAGAGATAGGAGGAGATCAAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACCTCACGACAGCAATATCTCTGCTCAAGGAAATGAGTAGCACAAAGTTTGTAGAATCAGCTGAAGCTCATTTCCGGCTCAACATTGATCCGAAATACAATGATCAACAGCTGAGAGCAACTGTAAATTTGCCTAAAGGAACTGGCCAAACTGTAAAAGTAGCTGTTCTTACTCAAGGTGAGAGATTCGATGAAGCAAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTAATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTAGGACCACGGGGGCTGATGCCAAATCCAAAAGCCGGTACTGTAGCAACCAATTTGCCTCAGGCAATAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACTGGTATAGTTCATTTACCGTTTGGAAAAGCCAACTTCAGCGAAGAGGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAATAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAAAGTGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGATATGCTGGACTTCAAACTTCCCTCGAGCGCTTGA

Protein sequence

MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSADWVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA

Homology

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BLAST of Cmc04g0105471 vs. NCBI nr
Match: XP_008461822.1 (PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo] >TYJ99869.1 50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 671.8 bits (1732), Expect = 3.3e-189
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
           WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
           RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP
Sbjct: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300
           KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Cmc04g0105471 vs. NCBI nr
Match: KAA0048392.1 (50S ribosomal protein L1 [Cucumis melo var. makuwa])

HSP 1 Score: 667.2 bits (1720), Expect = 8.1e-188
Identity = 356/357 (99.72%), Postives = 356/357 (99.72%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
           WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
           RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQG-ERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           VNLPKGTGQTVKVAVLTQG ERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 VNLPKGTGQTVKVAVLTQGSERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 300

Query: 301 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA
Sbjct: 301 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357

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BLAST of Cmc04g0105471 vs. NCBI nr
Match: XP_004149726.1 (50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KGN58572.1 hypothetical protein Csa_001857 [Cucumis sativus])

HSP 1 Score: 649.8 bits (1675), Expect = 1.3e-182
Identity = 345/356 (96.91%), Postives = 348/356 (97.75%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTSTPPSSLMLTSASSSV PPQDLASS+VSFK K QI TIKSFSSSNFLCRSRRS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVHPPQDLASSLVSFKAKLQISTIKSFSSSNFLCRSRRSPD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
           WVFLNFQRRARQHVIVAA AAEANVAEVEAEEEE VAAA TATAPKPKKGKAALPLKRDR
Sbjct: 61  WVFLNFQRRARQHVIVAAFAAEANVAEVEAEEEEGVAAAPTATAPKPKKGKAALPLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
           RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKF+ESAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFIESAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP
Sbjct: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300
           KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIRDMLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Cmc04g0105471 vs. NCBI nr
Match: XP_038905945.1 (50S ribosomal protein L1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 601.7 bits (1550), Expect = 4.2e-168
Identity = 329/357 (92.16%), Postives = 335/357 (93.84%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSF-SSSNFLCRSRRSA 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFK KPQI TIKSF SSS+FL   RRS 
Sbjct: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKPKPQISTIKSFSSSSHFLGWPRRST 60

Query: 61  DWVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRD 120
           DWVFL+FQRRAR HVIVAALAAEANVAEVEAEEE       T  APKPKKGKAALPLKRD
Sbjct: 61  DWVFLHFQRRARHHVIVAALAAEANVAEVEAEEE-----TPTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEYDL TAISLLKEM STKFVE+AEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTV+VAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+FS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 351

[Close]

BLAST of Cmc04g0105471 vs. NCBI nr
Match: XP_022948661.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 598.6 bits (1542), Expect = 3.6e-167
Identity = 320/358 (89.39%), Postives = 335/358 (93.58%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTST PSSLMLT ASSSV  PQDL SSIVSF GK +  TIKSFSS +FLCR RRSAD
Sbjct: 1   MAACTSTSPSSLMLTYASSSV-YPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSAD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120
           W+ LNFQRRAR HVIVAALAAEANVAE EAE EE VA   T T  APKPKKGKAALPLKR
Sbjct: 61  WICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300

Query: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPS+A
Sbjct: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of Cmc04g0105471 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.3e-119
Identity = 235/351 (66.95%), Postives = 278/351 (79.20%), Query Frame = 0


Query: 18  SSSVPPPQDL--ASSIVSFKGKPQIPT-IKSFSSSNFLC------RSRRSADWVFLNFQR 77
           +++ PP   L  ASS   ++  P   T  K    ++ LC      R R    WV    Q+
Sbjct: 2   ATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQK 61

Query: 78  RARQHV---IVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDRRRSKR 137
           ++ + V   ++AA+AAEA VA++E EE E+   A   +  KPKKGKAALPLK DR RSKR
Sbjct: 62  QSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKR 121

Query: 138 FLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRATVNLPK 197
           FLEIQKLRE K+EYDL TA+SL+K+MSSTKFVE+AEAHFRLNIDPKYNDQQLRATV+LPK
Sbjct: 122 FLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPK 181

Query: 198 GTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASL 257
           GTG+TVK+AVL QG++ DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DMM KVASL
Sbjct: 182 GTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASL 241

Query: 258 GKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLI 317
           G++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK NF EEDLLI
Sbjct: 242 GRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLI 301

Query: 318 NLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           NL A IKS+ETNKP+GAKGVYWKSAHI SSMGPSIRLNIR+MLD+K PS+A
Sbjct: 302 NLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of Cmc04g0105471 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.4e-118
Identity = 241/355 (67.89%), Postives = 276/355 (77.75%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAAC +   SSLML  A++S    QDL  +   F      P   SF     L     S D
Sbjct: 1   MAACAT--HSSLMLAYAAAST-RSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
                  R +    IV+A+AAE   A+++ EE+    A A    PKPKKGKAAL LKRDR
Sbjct: 61  RRCAAIDRASNHKFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
            RSKRFLEIQKLRE KKEYD+ TAISLLK+ ++T+FVES EAHFRLNIDPKYNDQQLRAT
Sbjct: 121 TRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           V+LPKGTGQTV VAVL QGE+ DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM 
Sbjct: 181 VSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300
           KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK NF+E
Sbjct: 241 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 300

Query: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSS 356
           EDLLIN LAA+KS+ETNKP GAKGVYWKSAHICSSMGPSI+LNIR+M+DFK P++
Sbjct: 301 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of Cmc04g0105471 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 7.9e-77
Identity = 143/233 (61.37%), Postives = 187/233 (80.26%), Query Frame = 0


Query: 120 RRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRA 179
           ++ S+R  + Q   EN K Y+   A++LLKE+++ KF E+AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRT 62

Query: 180 TVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 239
           TV+LPKGTG+TV+VAV+T+GE+  EA NAGAD+VG E+LIE+I  G MDF+ LIA+PDMM
Sbjct: 63  TVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMM 122

Query: 240 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 299
           PKVA LG+ LGPRGLMP+PK GTV T+L  AIAEFK GK+E+RAD+TGIVH+ FGKA+FS
Sbjct: 123 PKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFS 182

Query: 300 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKL 353
            EDLL+NL A  ++++ N+PSGAKG YW++ ++ SSMGPSI+++I  + D KL
Sbjct: 183 AEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of Cmc04g0105471 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-75
Identity = 141/237 (59.49%), Postives = 188/237 (79.32%), Query Frame = 0


Query: 120 RRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRA 179
           ++ S+R  E+Q   E+ +EY    A+SLLKE ++ KF E+AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRT 62

Query: 180 TVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 239
           TV LPKGTGQ V+VAV+ +GE+  EA NAGAD+ G E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 240 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 299
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA+FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 300 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
            EDLL+NL A  ++I+ N+PSGAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Cmc04g0105471 vs. ExPASy Swiss-Prot
Match: Q8YLJ7 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.5e-75
Identity = 141/237 (59.49%), Postives = 188/237 (79.32%), Query Frame = 0


Query: 120 RRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRA 179
           ++ S+R  E+Q   E+ +EY    A+ LLKE ++ KF E+AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRT 62

Query: 180 TVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 239
           TV LPKGTGQ V+VAV+ +GE+  EA NAGAD+VG E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 240 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 299
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA+FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 300 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
            EDLL+NL A  ++I+ N+PSGAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Cmc04g0105471 vs. ExPASy TrEMBL
Match: A0A5D3BLK6 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00110 PE=3 SV=1)

HSP 1 Score: 671.8 bits (1732), Expect = 1.6e-189
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
           WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
           RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP
Sbjct: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300
           KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Cmc04g0105471 vs. ExPASy TrEMBL
Match: A0A1S3CFH3 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1)

HSP 1 Score: 671.8 bits (1732), Expect = 1.6e-189
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
           WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
           RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP
Sbjct: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300
           KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Cmc04g0105471 vs. ExPASy TrEMBL
Match: A0A5A7TXX7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001120 PE=3 SV=1)

HSP 1 Score: 667.2 bits (1720), Expect = 3.9e-188
Identity = 356/357 (99.72%), Postives = 356/357 (99.72%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
           WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
           RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQG-ERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           VNLPKGTGQTVKVAVLTQG ERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 VNLPKGTGQTVKVAVLTQGSERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFS 300

Query: 301 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA
Sbjct: 301 EEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357

[Close]

BLAST of Cmc04g0105471 vs. ExPASy TrEMBL
Match: A0A0A0LD08 (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_3G687730 PE=3 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 6.5e-183
Identity = 345/356 (96.91%), Postives = 348/356 (97.75%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTSTPPSSLMLTSASSSV PPQDLASS+VSFK K QI TIKSFSSSNFLCRSRRS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVHPPQDLASSLVSFKAKLQISTIKSFSSSNFLCRSRRSPD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
           WVFLNFQRRARQHVIVAA AAEANVAEVEAEEEE VAAA TATAPKPKKGKAALPLKRDR
Sbjct: 61  WVFLNFQRRARQHVIVAAFAAEANVAEVEAEEEEGVAAAPTATAPKPKKGKAALPLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
           RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKF+ESAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFIESAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP
Sbjct: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300
           KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE
Sbjct: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300

Query: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           EDLLINLLAAIKSIETNKPSGAKGVYW+SAHICSSMGPSIRLNIRDMLDFKLPSSA
Sbjct: 301 EDLLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Cmc04g0105471 vs. ExPASy TrEMBL
Match: A0A6J1G9U2 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1)

HSP 1 Score: 598.6 bits (1542), Expect = 1.7e-167
Identity = 320/358 (89.39%), Postives = 335/358 (93.58%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAACTST PSSLMLT ASSSV  PQDL SSIVSF GK +  TIKSFSS +FLCR RRSAD
Sbjct: 1   MAACTSTSPSSLMLTYASSSV-YPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSAD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120
           W+ LNFQRRAR HVIVAALAAEANVAE EAE EE VA   T T  APKPKKGKAALPLKR
Sbjct: 61  WICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300

Query: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357
           SEEDLL+NLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPS+A
Sbjct: 301 SEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of Cmc04g0105471 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 427.6 bits (1098), Expect = 1.0e-119
Identity = 241/355 (67.89%), Postives = 276/355 (77.75%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAAC +   SSLML  A++S    QDL  +   F      P   SF     L     S D
Sbjct: 1   MAACAT--HSSLMLAYAAAST-RSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
                  R +    IV+A+AAE   A+++ EE+    A A    PKPKKGKAAL LKRDR
Sbjct: 61  RRCAAIDRASNHKFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
            RSKRFLEIQKLRE KKEYD+ TAISLLK+ ++T+FVES EAHFRLNIDPKYNDQQLRAT
Sbjct: 121 TRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           V+LPKGTGQTV VAVL QGE+ DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM 
Sbjct: 181 VSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSE 300
           KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK NF+E
Sbjct: 241 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 300

Query: 301 EDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSS 356
           EDLLIN LAA+KS+ETNKP GAKGVYWKSAHICSSMGPSI+LNIR+M+DFK P++
Sbjct: 301 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of Cmc04g0105471 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 282.7 bits (722), Expect = 4.0e-76
Identity = 177/295 (60.00%), Postives = 206/295 (69.83%), Query Frame = 0


Query: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60
           MAAC +   SSLML  A++S    QDL  +   F      P   SF     L     S D
Sbjct: 1   MAACAT--HSSLMLAYAAAST-RSQDLTPTPSLFSFASSRPNHLSFP----LLLLGGSRD 60

Query: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATATAPKPKKGKAALPLKRDR 120
                  R +    IV+A+AAE   A+++ EE+    A A    PKPKKGKAAL LKRDR
Sbjct: 61  RRCAAIDRASNHKFIVSAVAAE---ADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDR 120

Query: 121 RRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRAT 180
            RSKRFLEIQKLRE KKEYD+ TAISLLK+ ++T+FVES EAHFRLNIDPKYNDQQLRAT
Sbjct: 121 TRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMP 240
           V+LPKGTGQTV VAVL QGE+ DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM 
Sbjct: 181 VSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV 240

Query: 241 KVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 296
           KVA LGK+LGPRGLMPNPKAGTV  N+PQ+    ++GK+     K G+     GK
Sbjct: 241 KVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of Cmc04g0105471 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 162.5 bits (410), Expect = 6.1e-40
Identity = 90/224 (40.18%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 131 KLRENKKE-YDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 190
           +L+  KK  +DL  AI  +K  +  KF E+ EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 191 TVKVAVLTQGERFDEAKNAGADLVGGEDLIEQI-KGGFMDFDKLIASPDMMPKVASLGKL 250
            VKVA   +G   ++AK AGAD+VGG +LIE+I K G +DFD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 251 LGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEEDLLINLL 310
           L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK +FSEE L  N+ 
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358

Query: 311 AAIKSIETNKPSGAKGV-----YWKSAHICSSMGPSIRLNIRDM 348
           A + ++   KP+G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 AFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of Cmc04g0105471 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461822.1	3.3e-189	100.00	PREDICTED: 50S ribosomal protein L1, chloroplastic [Cucumis melo] >TYJ99869.1 50...	[more]
KAA0048392.1	8.1e-188	99.72	50S ribosomal protein L1 [Cucumis melo var. makuwa]	[more]
XP_004149726.1	1.3e-182	96.91	50S ribosomal protein L1, chloroplastic [Cucumis sativus] >KGN58572.1 hypothetic...	[more]
XP_038905945.1	4.2e-168	92.16	50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]	[more]
XP_022948661.1	3.6e-167	89.39	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Cmc04g0105471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LE95	1.3e-119	66.95	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
Q9LY66	1.4e-118	67.89	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
B0JNQ5	7.9e-77	61.37	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
Q3MA18	1.1e-75	59.49	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YLJ7	2.5e-75	59.49	50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of Cmc04g0105471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLK6	1.6e-189	100.00	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00...	[more]
A0A1S3CFH3	1.6e-189	100.00	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1	[more]
A0A5A7TXX7	3.9e-188	99.72	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00...	[more]
A0A0A0LD08	6.5e-183	96.91	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_3G687730 PE=3 SV=1	[more]
A0A6J1G9U2	1.7e-167	89.39	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1	[more]

BLAST of Cmc04g0105471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	1.0e-119	67.89	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	4.0e-76	60.00	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	6.1e-40	40.18	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..98
None	No IPR available	GENE3D	3.30.190.20		coord: 139..342 e-value: 4.7E-82 score: 276.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 136..347
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 136..347
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 148..338 e-value: 3.4E-47 score: 160.8
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 144..342 e-value: 6.18187E-73 score: 223.6
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 122..345 e-value: 4.7E-94 score: 312.0
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 120..347 score: 39.567905
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 186..277 e-value: 4.7E-82 score: 276.5
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 239..257
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 125..344

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0105471.1	Cmc04g0105471.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding