Cmc04g0105311 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0105311
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 23447743 .. 23448741 (+)
RNA-Seq Expression	Cmc04g0105311
Synteny	Cmc04g0105311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCGGCTAAAGCAGTGGGAGATTTAAAGTTGTTTTTTAATGGTAGATATATTATACTCAAGAATGTCTTGTATGCACCTCTAATGAAGAGGAATTTGCTATATATCTCTTGTTTATTAGAACATATGTATAAAATATCTTTTAACATTAATGAAGCGTTCATTTTAAGAAAATGTATTCACATTTGTTCTGCTATACTTGAAAACAACTTATATAAATTAAGACCAACACGAGAAAATTTTGTCTTAAATACTGAGATGTTTAGAACAATTGAAACTCAAAATAAAAGACAAAAAGTTTCTTCCAATACCTTCTTATGGCACTTAAGACTCGGTCACATTAACCTCAATAGGATTGGGAGATTAGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATAACCAAAAGATATTTTACTAGAAAAGGTCTTAGAGCCAAAACACCTTTAGAGCTCGTACATTTGGACCTTTGTGGACCAATGAATGTAAAGGTTCGGGGAGGATATGAATATTTCATTAGTTTGATTGATGATTATTCGAGGTATGAACATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTATAGTTGAAAATGAATCAGGTAAAACGATAAAGACATTTCGATCAGATCGAAGTGGAGAGTATATGGATTTACGATTTCAAGACTATTTGATAGAACATGGAATCCAATCGCAACTCTCCGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGTCGGATTCTTTTTGGGGATATGCTTTAGAAACAACTATCTATATTTTGAACAACGTTCCCTCTAAAAATGTTTCTGAAACACCTTATGAGCTATGGAAATGGCGTAAAGGTAGTTTACTTCACTTTAGGATTTAG

mRNA sequence

ATGGTCTCGGCTAAAGCAGTGGGAGATTTAAAGTTGTTTTTTAATGGTAGATATATTATACTCAAGAATGTCTTGTATGCACCTCTAATGAAGAGGAATTTGCTATATATCTCTTGTTTATTAGAACATATGTATAAAATATCTTTTAACATTAATGAAGCGTTCATTTTAAGAAAATGTATTCACATTTGTTCTGCTATACTTGAAAACAACTTATATAAATTAAGACCAACACGAGAAAATTTTGTCTTAAATACTGAGATGTTTAGAACAATTGAAACTCAAAATAAAAGACAAAAAGTTTCTTCCAATACCTTCTTATGGCACTTAAGACTCGGTCACATTAACCTCAATAGGATTGGGAGATTAGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATAACCAAAAGATATTTTACTAGAAAAGGTCTTAGAGCCAAAACACCTTTAGAGCTCGTACATTTGGACCTTTGTGGACCAATGAATGTAAAGGTTCGGGGAGGATATGAATATTTCATTAGTTTGATTGATGATTATTCGAGGTATGAACATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTATAGTTGAAAATGAATCAGGTAAAACGATAAAGACATTTCGATCAGATCGAAGTGGAGAGTATATGGATTTACGATTTCAAGACTATTTGATAGAACATGGAATCCAATCGCAACTCTCCGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGTCGGATTCTTTTTGGGGATATGCTTTAGAAACAACTATCTATATTTTGAACAACGTTCCCTCTAAAAATGTTTCTGAAACACCTTATGAGCTATGGAAATGGCGTAAAGGTAGTTTACTTCACTTTAGGATTTAG

Coding sequence (CDS)

ATGGTCTCGGCTAAAGCAGTGGGAGATTTAAAGTTGTTTTTTAATGGTAGATATATTATACTCAAGAATGTCTTGTATGCACCTCTAATGAAGAGGAATTTGCTATATATCTCTTGTTTATTAGAACATATGTATAAAATATCTTTTAACATTAATGAAGCGTTCATTTTAAGAAAATGTATTCACATTTGTTCTGCTATACTTGAAAACAACTTATATAAATTAAGACCAACACGAGAAAATTTTGTCTTAAATACTGAGATGTTTAGAACAATTGAAACTCAAAATAAAAGACAAAAAGTTTCTTCCAATACCTTCTTATGGCACTTAAGACTCGGTCACATTAACCTCAATAGGATTGGGAGATTAGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATAACCAAAAGATATTTTACTAGAAAAGGTCTTAGAGCCAAAACACCTTTAGAGCTCGTACATTTGGACCTTTGTGGACCAATGAATGTAAAGGTTCGGGGAGGATATGAATATTTCATTAGTTTGATTGATGATTATTCGAGGTATGAACATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTATAGTTGAAAATGAATCAGGTAAAACGATAAAGACATTTCGATCAGATCGAAGTGGAGAGTATATGGATTTACGATTTCAAGACTATTTGATAGAACATGGAATCCAATCGCAACTCTCCGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGTCGGATTCTTTTTGGGGATATGCTTTAGAAACAACTATCTATATTTTGAACAACGTTCCCTCTAAAAATGTTTCTGAAACACCTTATGAGCTATGGAAATGGCGTAAAGGTAGTTTACTTCACTTTAGGATTTAG

Protein sequence

MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKCIHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSSNTFLWHLRLGHINLNRIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVKVRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI

Homology

[Close]

BLAST of Cmc04g0105311 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 547.4 bits (1409), Expect = 8.8e-152
Identity = 271/332 (81.63%), Postives = 296/332 (89.16%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           +VSA+AVGDL LFF  RY+ILK+VLY PLMKRNL+ I+C+LEH+Y ISF +NE FIL K 
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSSNTFLWHLRLGHINLNRI 120
           I ICSAI ENNLYKLRPTR N VLNTEMFRT+ETQNK+QKVSSN +LWHLRLGHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVKVR 180
            RLVKSG+L+QLEDNSLPPC+SCLEGK+TKR FT KGLRAK PLELVH DLCGPMNVK R
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 GGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEYMD 240
           GGYEYFIS IDD+SRY HVYL+ +KS+SFEKFKEYKA VENE GKTIKT RSDR GEYMD
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 LRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETT 300
            +FQDYLIE GIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMS+AQL DSFWGYALET 
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           I+ILNNVPSK+V ETPYELWK RK SL +FRI
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRI 669

[Close]

BLAST of Cmc04g0105311 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 491.9 bits (1265), Expect = 4.4e-135
Identity = 238/334 (71.26%), Postives = 283/334 (84.73%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           ++SA+AVGD KLFF  +++ L+N+   P +KRNL+ +SCL+EHMY I+F++NEAFI +  
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVS--SNTFLWHLRLGHINLN 120
           +HICSA LENNLY LRP     VLN EMFRT  TQNKRQ++S  +NT+LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RIGRLVK+GLL++L+D SLPPC+SCLEGK+TKR FT KG RAK PLEL+H DLCGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
            RGG+EYFIS IDDYSRY ++YL+++KS++ EKFKEYK  VEN   K IK  RSDR GEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDMVRSMMS+AQL  SFWGYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T ++ILNNVPSK+VSETP+ELW+ RK SL HFRI
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRI 575

[Close]

BLAST of Cmc04g0105311 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 488.4 bits (1256), Expect = 4.8e-134
Identity = 237/334 (70.96%), Postives = 281/334 (84.13%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           ++SA+AVGD KLFF  +++ L+N+   P +KRNL+ +SCL+EHMY I+F++NEAFI +  
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVS--SNTFLWHLRLGHINLN 120
           +HICSA LENNLY LRP     VLN EMFRT  TQNKRQ++S  +NT+LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RIGRLVK GLL++L+D SLPPC+SCLEGK+TKR FT KG RAK PLEL+H DLCGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
            RG +EYFIS IDDYSRY ++YL+++KS++ EKFKEYK  VEN   K IK FRSDR GEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDL FQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDMVRSMMS+AQL  SFWGYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T ++ILNNVPSK+VSETP+ELW+ RK SL HFRI
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRI 575

[Close]

BLAST of Cmc04g0105311 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 483.8 bits (1244), Expect = 1.2e-132
Identity = 235/334 (70.36%), Postives = 278/334 (83.23%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           ++SA+AVGD KLFF  +++ L+N+   P +KRNL+ +SCL+EHMY ISF++NEAFI +  
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSS--NTFLWHLRLGHINLN 120
           +HICS  LE+NLY L+P     VLN EMFRT  TQNKRQ++SS  NT+LWHLRLGHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RIGRLVK+GLL++LED+SLPPC+SCLEGK+TKR FT KG RAK PLEL+H DLCGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
             GG+EYFIS IDDYS Y ++YLI++KS++ EKFKEYK  VEN   K IK  RSDR GEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDMV SMMS+ QL  SFWGYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T ++ILNNVPSKNV ETP+ELW+ RK SL HFRI
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRI 547

[Close]

BLAST of Cmc04g0105311 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 456.4 bits (1173), Expect = 2.0e-124
Identity = 229/334 (68.56%), Postives = 269/334 (80.54%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           +VSA AVG L+L     +++L+NV   P +KRNL+ + CLLE  Y ++FN+N+ FI +  
Sbjct: 344 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 403

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVS--SNTFLWHLRLGHINLN 120
           + ICSA LENNLY LR      +LNTEMF+T  TQNKR K+S   N  LWHLRLGHINLN
Sbjct: 404 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 463

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RI RLVK+GLLS+LE+NSLP C+SCLEGK+TKR FT KG RAK PLELVH DLCGPMNVK
Sbjct: 464 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 523

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
            RGG+EYFI+  DDYSRY +VYL+Q+KS++ EKFKEYKA VEN   KTIKTFRSDR GEY
Sbjct: 524 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 583

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDL+FQ+YL+E GI SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A L +SFWGYA++
Sbjct: 584 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 643

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T +YILN VPSK+VSETP +LW  RKGSL HFRI
Sbjct: 644 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRI 677

[Close]

BLAST of Cmc04g0105311 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.8e-49
Identity = 111/328 (33.84%), Postives = 184/328 (56.10%), Query Frame = 0


Query: 7   VGDLKLFFN-GRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKCIHICS 66
           +GD+ +  N G  ++LK+V + P ++ NL+    L    Y+  F   +  + +  + I  
Sbjct: 335 IGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAK 394

Query: 67  AILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSSNTFLWHLRLGHINLNRIGRLVK 126
            +    LY+          N E+ +  E    + ++S +  LWH R+GH++   +  L K
Sbjct: 395 GVARGTLYR---------TNAEICQG-ELNAAQDEISVD--LWHKRMGHMSEKGLQILAK 454

Query: 127 SGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVKVRGGYEY 186
             L+S  +  ++ PCD CL GK  +  F     R    L+LV+ D+CGPM ++  GG +Y
Sbjct: 455 KSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKY 514

Query: 187 FISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEYMDLRFQD 246
           F++ IDD SR   VY+++ K   F+ F+++ A+VE E+G+ +K  RSD  GEY    F++
Sbjct: 515 FVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEE 574

Query: 247 YLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETTIYILN 306
           Y   HGI+ + + P TPQ NGV+ER NRT+++ VRSM+  A+L  SFWG A++T  Y++N
Sbjct: 575 YCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLIN 634

Query: 307 NVPSKNVS-ETPYELWKWRKGSLLHFRI 333
             PS  ++ E P  +W  ++ S  H ++
Sbjct: 635 RSPSVPLAFEIPERVWTNKEVSYSHLKV 650

[Close]

BLAST of Cmc04g0105311 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 151.0 bits (380), Expect = 2.4e-35
Identity = 104/331 (31.42%), Postives = 159/331 (48.04%), Query Frame = 0


Query: 15  NGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKCIHICSAILENNLYK 74
           N   I L++VL+      NL+ +  L E    I F+ +   I +  + +           
Sbjct: 339 NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMV----------- 398

Query: 75  LRPTRENFVLNTEMFRTIETQNKRQKVSSNTFLWHLRLGHIN------LNRIGRLVKSGL 134
               + + +LN       +  +   K  +N  LWH R GHI+      + R        L
Sbjct: 399 ---VKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSL 458

Query: 135 LSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKT----PLELVHLDLCGPMNVKVRGGYE 194
           L+ LE  S   C+ CL GK  +  F  K L+ KT    PL +VH D+CGP+         
Sbjct: 459 LNNLE-LSCEICEPCLNGKQARLPF--KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKN 518

Query: 195 YFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEYMDLRFQ 254
           YF+  +D ++ Y   YLI+ KSD F  F+++ A  E      +     D   EY+    +
Sbjct: 519 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 578

Query: 255 DYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETTIYIL 314
            + ++ GI   L+ P TPQ NGVSER  RT+ +  R+M+S A+L  SFWG A+ T  Y++
Sbjct: 579 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLI 638

Query: 315 NNVPSK---NVSETPYELWKWRKGSLLHFRI 333
           N +PS+   + S+TPYE+W  +K  L H R+
Sbjct: 639 NRIPSRALVDSSKTPYEMWHNKKPYLKHLRV 652

[Close]

BLAST of Cmc04g0105311 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-27
Identity = 84/309 (27.18%), Postives = 150/309 (48.54%), Query Frame = 0


Query: 8   GDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLE------HMYKISFNINEAFILRKCI 67
           G   L  + R + L  VLY P + +NL+ +  L          +  SF + +   L   +
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKD---LNTGV 412

Query: 68  HICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSSNTFLWHLRLGHINLNRIG 127
            +     ++ LY      E  + +++      +   +   SS    WH RLGH +L  + 
Sbjct: 413 PLLQGKTKDELY------EWPIASSQAVSMFASPCSKATHSS----WHSRLGHPSLAILN 472

Query: 128 RLVKSGLLSQLE-DNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVKVR 187
            ++ +  L  L   + L  C  C   K  K  F+   + +  PLE ++ D+     + + 
Sbjct: 473 SVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSI- 532

Query: 188 GGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEYMD 247
             Y Y++  +D ++RY  +Y ++ KS   + F  +K++VEN     I T  SD  GE++ 
Sbjct: 533 DNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVV 592

Query: 248 LRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETT 307
           LR  DYL +HGI    S P TP+ NG+SER++R +++M  +++S A +  ++W YA    
Sbjct: 593 LR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVA 645

Query: 308 IYILNNVPS 310
           +Y++N +P+
Sbjct: 653 VYLINRLPT 645

[Close]

BLAST of Cmc04g0105311 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-26
Identity = 83/319 (26.02%), Postives = 154/319 (48.28%), Query Frame = 0


Query: 8   GDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLE------HMYKISFNINEAFILRKCI 67
           G   L    R + L N+LY P + +NL+ +  L          +  SF + +   L   +
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKD---LNTGV 433

Query: 68  HICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSSNTFLWHLRLGHINLNRIG 127
            +     ++ LY      E  + +++      + + +   SS    WH RLGH   + + 
Sbjct: 434 PLLQGKTKDELY------EWPIASSQPVSLFASPSSKATHSS----WHARLGHPAPSILN 493

Query: 128 RLVKSGLLSQLE-DNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVKVR 187
            ++ +  LS L   +    C  CL  K  K  F++  + +  PLE ++ D+     +   
Sbjct: 494 SVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSH 553

Query: 188 GGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEYMD 247
             Y Y++  +D ++RY  +Y ++ KS   E F  +K ++EN     I TF SD  GE++ 
Sbjct: 554 DNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA 613

Query: 248 LRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETT 307
           L   +Y  +HGI    S P TP+ NG+SER++R +++   +++S A +  ++W YA    
Sbjct: 614 L--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVA 673

Query: 308 IYILNNVPSKNVS-ETPYE 319
           +Y++N +P+  +  E+P++
Sbjct: 674 VYLINRLPTPLLQLESPFQ 676

[Close]

BLAST of Cmc04g0105311 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-19
Identity = 64/234 (27.35%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 91  TIETQNKRQKVSSNTF-LWHLRLGHINLNRIGRLVKSGLLSQLEDNSLP-------PCDS 150
           TI   NK + V+   + L H  LGH N   I + +K   ++ L+++ +         C  
Sbjct: 576 TINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPD 635

Query: 151 CLEGKITKRYFTRKGLRAK-----TPLELVHLDLCGPMNVKVRGGYEYFISLIDDYSRYE 210
           CL GK TK     KG R K      P + +H D+ GP++   +    YFIS  D+ +R++
Sbjct: 636 CLIGKSTKHRHV-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 695

Query: 211 HVYLIQNKSDS--FEKFKEYKAIVENESGKTIKTFRSDRSGEYMDLRFQDYLIEHGIQSQ 270
            VY + ++ +      F    A ++N+    +   + DR  EY +     +    GI + 
Sbjct: 696 WVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 755

Query: 271 LSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETTIYILNNVPS 310
            +  +  + +GV+ER NRTLL+  R+++  + L +  W  A+E +  I N++ S
Sbjct: 756 YTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc04g0105311 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 4.2e-152
Identity = 271/332 (81.63%), Postives = 296/332 (89.16%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           +VSA+AVGDL LFF  RY+ILK+VLY PLMKRNL+ I+C+LEH+Y ISF +NE FIL K 
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSSNTFLWHLRLGHINLNRI 120
           I ICSAI ENNLYKLRPTR N VLNTEMFRT+ETQNK+QKVSSN +LWHLRLGHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVKVR 180
            RLVKSG+L+QLEDNSLPPC+SCLEGK+TKR FT KGLRAK PLELVH DLCGPMNVK R
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 GGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEYMD 240
           GGYEYFIS IDD+SRY HVYL+ +KS+SFEKFKEYKA VENE GKTIKT RSDR GEYMD
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 LRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALETT 300
            +FQDYLIE GIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMS+AQL DSFWGYALET 
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           I+ILNNVPSK+V ETPYELWK RK SL +FRI
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRI 669

[Close]

BLAST of Cmc04g0105311 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 2.1e-135
Identity = 238/334 (71.26%), Postives = 283/334 (84.73%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           ++SA+AVGD KLFF  +++ L+N+   P +KRNL+ +SCL+EHMY I+F++NEAFI +  
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVS--SNTFLWHLRLGHINLN 120
           +HICSA LENNLY LRP     VLN EMFRT  TQNKRQ++S  +NT+LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RIGRLVK+GLL++L+D SLPPC+SCLEGK+TKR FT KG RAK PLEL+H DLCGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
            RGG+EYFIS IDDYSRY ++YL+++KS++ EKFKEYK  VEN   K IK  RSDR GEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDMVRSMMS+AQL  SFWGYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T ++ILNNVPSK+VSETP+ELW+ RK SL HFRI
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRI 575

[Close]

BLAST of Cmc04g0105311 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.3e-134
Identity = 237/334 (70.96%), Postives = 281/334 (84.13%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           ++SA+AVGD KLFF  +++ L+N+   P +KRNL+ +SCL+EHMY I+F++NEAFI +  
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVS--SNTFLWHLRLGHINLN 120
           +HICSA LENNLY LRP     VLN EMFRT  TQNKRQ++S  +NT+LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RIGRLVK GLL++L+D SLPPC+SCLEGK+TKR FT KG RAK PLEL+H DLCGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
            RG +EYFIS IDDYSRY ++YL+++KS++ EKFKEYK  VEN   K IK FRSDR GEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDL FQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDMVRSMMS+AQL  SFWGYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T ++ILNNVPSK+VSETP+ELW+ RK SL HFRI
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRI 575

[Close]

BLAST of Cmc04g0105311 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 5.8e-133
Identity = 235/334 (70.36%), Postives = 278/334 (83.23%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           ++SA+AVGD KLFF  +++ L+N+   P +KRNL+ +SCL+EHMY ISF++NEAFI +  
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVSS--NTFLWHLRLGHINLN 120
           +HICS  LE+NLY L+P     VLN EMFRT  TQNKRQ++SS  NT+LWHLRLGHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RIGRLVK+GLL++LED+SLPPC+SCLEGK+TKR FT KG RAK PLEL+H DLCGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
             GG+EYFIS IDDYS Y ++YLI++KS++ EKFKEYK  VEN   K IK  RSDR GEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDMV SMMS+ QL  SFWGYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T ++ILNNVPSKNV ETP+ELW+ RK SL HFRI
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRI 547

[Close]

BLAST of Cmc04g0105311 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 9.8e-125
Identity = 229/334 (68.56%), Postives = 269/334 (80.54%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNGRYIILKNVLYAPLMKRNLLYISCLLEHMYKISFNINEAFILRKC 60
           +VSA AVG L+L     +++L+NV   P +KRNL+ + CLLE  Y ++FN+N+ FI +  
Sbjct: 345 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 404

Query: 61  IHICSAILENNLYKLRPTRENFVLNTEMFRTIETQNKRQKVS--SNTFLWHLRLGHINLN 120
           + ICSA LENNLY LR      +LNTEMF+T  TQNKR K+S   N  LWHLRLGHINLN
Sbjct: 405 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 464

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEGKITKRYFTRKGLRAKTPLELVHLDLCGPMNVK 180
           RI RLVK+GLLS+LE+NSLP C+SCLEGK+TKR FT KG RAK PLELVH DLCGPMNVK
Sbjct: 465 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 524

Query: 181 VRGGYEYFISLIDDYSRYEHVYLIQNKSDSFEKFKEYKAIVENESGKTIKTFRSDRSGEY 240
            RGG+EYFI+  DDYSRY +VYL+Q+KS++ EKFKEYKA VEN   KTIKTFRSDR GEY
Sbjct: 525 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 584

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSFAQLSDSFWGYALE 300
           MDL+FQ+YL+E GI SQLSAP TPQQNGVSERRNRTLLDMVRSMMS+A L +SFWGYA++
Sbjct: 585 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 644

Query: 301 TTIYILNNVPSKNVSETPYELWKWRKGSLLHFRI 333
           T +YILN VPSK+VSETP +LW  RKGSL HFRI
Sbjct: 645 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRI 678

The following BLAST results are available for this feature:

BLAST of Cmc04g0105311 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	8.8e-152	81.63	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	4.4e-135	71.26	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	4.8e-134	70.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	1.2e-132	70.36	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0048404.1	2.0e-124	68.56	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0105311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.8e-49	33.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.4e-35	31.42	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.1e-27	27.18	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-26	26.02	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	5.4e-19	27.35	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0105311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	4.2e-152	81.63	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	2.1e-135	71.26	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	2.3e-134	70.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	5.8e-133	70.36	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7SMH8	9.8e-125	68.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]

BLAST of Cmc04g0105311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 162..262 e-value: 1.6E-10 score: 41.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 159..324 score: 24.599548
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 98..147 e-value: 2.3E-12 score: 46.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 156..330 e-value: 1.4E-37 score: 131.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 91..332
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 159..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0105311.1	Cmc04g0105311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding