Cmc04g0104641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0104641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	CMiso1.1chr04: 22604105 .. 22604746 (+)
RNA-Seq Expression	Cmc04g0104641
Synteny	Cmc04g0104641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACATTTCATTGGCTGTCATAAAACTGATTATGCCAAGAATGTTGCTGATTTATTCTTTAAGGAAGTTGTGAGGTTGCATGGCATTCTAAGTTCAATAGTTAGTGATCGAGATGTCAAGTTTTTAAGTCATTTTTGGAAAGTTTTATGGGGAAAGTTGGGAACTAAGTTGTTATTTTCTACCACATGTCACCCACATACTGATGGCCAAACTGAGGTTGTCAATCGAATGTTAATAACTTTGCTTATGAAAATTCTTGAAAAGAATCTTCGCATGTGGAAGGAAATTTTTTCTTTTGTTGAGATTGCTTATAATAGGGCTATCCATAGTACAACTAAATGTTCTTCTTTTGAAATAGCCTATGGTTTGACACCTGTTGATTTATTGCCATTGCCAACTAACAAGTTTGTACATCTTGATGCTAAATCAAAAACTGAGTTTGTCAAGAAGCTTCATAAGAAAGTAAAAGAGAGAATTGAAAAGCATAATGACAAGGTGGCCAAACGAGTGAATCAAGGAAGGATACCACTCATTTTAAAACTAGGAAATTGGGTTTGGATTTTTTTCGGAAGGAGCATTTTCCAAACCAAAGGAAGTCCAATTTACATCCAAGGGGAGATTGACCATTTCAAGTTTTAG

mRNA sequence

ATGTCACATTTCATTGGCTGTCATAAAACTGATTATGCCAAGAATGTTGCTGATTTATTCTTTAAGGAAGTTGTGAGGTTGCATGGCATTCTAAGTTCAATAGTTAGTGATCGAGATGTCAAGTTTTTAAGTCATTTTTGGAAAGTTTTATGGGGAAAGTTGGGAACTAAGTTGTTATTTTCTACCACATGTCACCCACATACTGATGGCCAAACTGAGGTTGTCAATCGAATGTTAATAACTTTGCTTATGAAAATTCTTGAAAAGAATCTTCGCATGTGGAAGGAAATTTTTTCTTTTGTTGAGATTGCTTATAATAGGGCTATCCATAGTACAACTAAATGTTCTTCTTTTGAAATAGCCTATGGTTTGACACCTGTTGATTTATTGCCATTGCCAACTAACAAGTTTGTACATCTTGATGCTAAATCAAAAACTGAGTTTGTCAAGAAGCTTCATAAGAAAGTAAAAGAGAGAATTGAAAAGCATAATGACAAGGTGGCCAAACGAGTGAATCAAGGAAGGATACCACTCATTTTAAAACTAGGAAATTGGGTTTGGATTTTTTTCGGAAGGAGCATTTTCCAAACCAAAGGAAGTCCAATTTACATCCAAGGGGAGATTGACCATTTCAAGTTTTAG

Coding sequence (CDS)

ATGTCACATTTCATTGGCTGTCATAAAACTGATTATGCCAAGAATGTTGCTGATTTATTCTTTAAGGAAGTTGTGAGGTTGCATGGCATTCTAAGTTCAATAGTTAGTGATCGAGATGTCAAGTTTTTAAGTCATTTTTGGAAAGTTTTATGGGGAAAGTTGGGAACTAAGTTGTTATTTTCTACCACATGTCACCCACATACTGATGGCCAAACTGAGGTTGTCAATCGAATGTTAATAACTTTGCTTATGAAAATTCTTGAAAAGAATCTTCGCATGTGGAAGGAAATTTTTTCTTTTGTTGAGATTGCTTATAATAGGGCTATCCATAGTACAACTAAATGTTCTTCTTTTGAAATAGCCTATGGTTTGACACCTGTTGATTTATTGCCATTGCCAACTAACAAGTTTGTACATCTTGATGCTAAATCAAAAACTGAGTTTGTCAAGAAGCTTCATAAGAAAGTAAAAGAGAGAATTGAAAAGCATAATGACAAGGTGGCCAAACGAGTGAATCAAGGAAGGATACCACTCATTTTAAAACTAGGAAATTGGGTTTGGATTTTTTTCGGAAGGAGCATTTTCCAAACCAAAGGAAGTCCAATTTACATCCAAGGGGAGATTGACCATTTCAAGTTTTAG

Protein sequence

MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLFSTTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEIAYGLTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIPLILKLGNWVWIFFGRSIFQTKGSPIYIQGEIDHFKF

Homology

[Close]

BLAST of Cmc04g0104641 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 6.0e-69
Identity = 125/201 (62.19%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+HFI CHKTD AK +ADLFF+EVVRLHGI  +IVSDRDVK LSHFW+VLWGKLGTKL++
Sbjct: 983  MAHFIPCHKTDDAKLIADLFFREVVRLHGIPRTIVSDRDVKXLSHFWRVLWGKLGTKLVY 1042

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            STTCHP TDGQTEVVNR ++T+L  I++KNL+ W++    +E AYNRA+H TTKC+ FEI
Sbjct: 1043 STTCHPQTDGQTEVVNRTMVTMLRAIIDKNLKTWEDCLPLIEFAYNRAVHXTTKCTPFEI 1102

Query: 121  AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
             YG   ++P+DLLP+P N+FV  DA +K + V +LHK+VKERIEK N KVA R+N+GR  
Sbjct: 1103 VYGFNPISPLDLLPMPPNEFVSYDASTKVDLVHRLHKEVKERIEKQNTKVASRINKGRKL 1162

Query: 181  LILKLGNWVWIFFGRSIFQTK 199
            L+   G+WVW+ F +  F T+
Sbjct: 1163 LVFXPGDWVWVHFRKERFPTQ 1183

[Close]

BLAST of Cmc04g0104641 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 268.9 bits (686), Expect = 3.9e-68
Identity = 133/211 (63.03%), Postives = 157/211 (74.41%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+HFI C+KTD A N+A+LFF+EVVRLHGI  +IVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 1153 MAHFIPCNKTDDATNIANLFFREVVRLHGIPKTIVSDRDVKFLSHFWKVLWGKLGTKLLF 1212

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            STTCHP TDGQTEVVNR L  LL  ++ KNL+ W+E   FVE AYNRAIHSTT CS FE+
Sbjct: 1213 STTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFVEFAYNRAIHSTTHCSPFEV 1272

Query: 121  AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
             YG   LTP+DL PLP N F    A S+ E++K LHK++KERIEK N K+  R NQGR  
Sbjct: 1273 VYGFNPLTPLDLSPLPPNMFTSDAASSRVEYIKTLHKEIKERIEKKNQKLVTRKNQGRKE 1332

Query: 181  LILKLGNWVWIFFGRSIF-QTKGSPIYIQGE 208
            LI K G+WVW+   +  F   + S +  QG+
Sbjct: 1333 LIFKPGDWVWVHLRKERFPDQRKSKLQQQGD 1363

[Close]

BLAST of Cmc04g0104641 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 267.7 bits (683), Expect = 8.6e-68
Identity = 141/209 (67.46%), Postives = 154/209 (73.68%), Query Frame = 0


Query: 1   MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
           MSHFI CHK D A +VA+LFF+EVVRLHGI SSIVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 216 MSHFIACHKADDANDVANLFFREVVRLHGIPSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 275

Query: 61  STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
           STTCHP TDGQTEVVNR LIT L  IL+KNLRMW+EI  FVE  YN+AIHSTTKCS FEI
Sbjct: 276 STTCHPQTDGQTEVVNRTLITSLRTILKKNLRMWEEILPFVEFTYNKAIHSTTKCSPFEI 335

Query: 121 AYGL---TPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
            YG    TP+DLLPLPTNKFV+LDAKSK EFVKKLHK+                      
Sbjct: 336 VYGFNPKTPLDLLPLPTNKFVNLDAKSKAEFVKKLHKQ---------------------- 395

Query: 181 LILKLGNWVWIFFGRSIFQTKGSPIYIQG 207
              ++G      F RSIFQTKGSP+  +G
Sbjct: 396 ---EIG--FEFIFERSIFQTKGSPVTSKG 397

[Close]

BLAST of Cmc04g0104641 vs. NCBI nr
Match: TYK22420.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-67
Identity = 130/198 (65.66%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+HFI C+KTD A N+A+LFF+EVVRLHGI  +IVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 1052 MAHFIPCNKTDDATNIANLFFREVVRLHGIPKTIVSDRDVKFLSHFWKVLWGKLGTKLLF 1111

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            STTCHP TDGQTEVVNR L  LL  ++ KNL+ W+E   FVE AYNRAIHSTT CS FE+
Sbjct: 1112 STTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFVEFAYNRAIHSTTHCSPFEV 1171

Query: 121  AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
             YG   LTP+DL PLP N F    A S+ E++K LHK++KERIEK N K+  R NQGR  
Sbjct: 1172 VYGFNPLTPLDLSPLPPNMFTSDAASSRVEYIKTLHKEIKERIEKKNQKLVTRKNQGRKE 1231

Query: 181  LILKLGNWVWIFFGRSIF 196
            LI K G+WVW+   +  F
Sbjct: 1232 LIFKPGDWVWVHLRKERF 1249

[Close]

BLAST of Cmc04g0104641 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-67
Identity = 130/198 (65.66%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+HFI C+KTD A N+A+LFF+EVVRLHGI  +IVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 1153 MAHFIPCNKTDDATNIANLFFREVVRLHGIPKTIVSDRDVKFLSHFWKVLWGKLGTKLLF 1212

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            STTCHP TDGQTEVVNR L  LL  ++ KNL+ W+E   FVE AYNRAIHSTT CS FE+
Sbjct: 1213 STTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFVEFAYNRAIHSTTHCSPFEV 1272

Query: 121  AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
             YG   LTP+DL PLP N F    A S+ E++K LHK++KERIEK N K+  R NQGR  
Sbjct: 1273 VYGFNPLTPLDLSPLPPNMFTSDAASSRVEYIKTLHKEIKERIEKKNQKLVTRKNQGRKE 1332

Query: 181  LILKLGNWVWIFFGRSIF 196
            LI K G+WVW+   +  F
Sbjct: 1333 LIFKPGDWVWVHLRKERF 1350

[Close]

BLAST of Cmc04g0104641 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 7.2e-17
Identity = 63/207 (30.43%), Postives = 100/207 (48.31%), Query Frame = 0


Query: 2    SHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLFS 61
            +HFI   KT  A  + DL F+ +   HG   +I SDRDV+  +  ++ L  +LG K   S
Sbjct: 1227 AHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMS 1286

Query: 62   TTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEIA 121
            +  HP TDGQ+E   + L  LL   +  N++ W      +E  YN     T   S FEI 
Sbjct: 1287 SANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEID 1346

Query: 122  YGLTPVDLLPLPTNKFVHLDAKSKTEFVKKLHK---KVKERIEKHNDKVAKRVNQGRIPL 181
             G  P +   + ++  V+  + +  E  K L     + KE++E    ++    NQ R PL
Sbjct: 1347 LGYLP-NTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPL 1406

Query: 182  ILKLGNWVWIFFGRSIFQTKGSPIYIQ 206
            +L +G+ V +   R  +  KG+ + +Q
Sbjct: 1407 LLNIGDHVLVH--RDAYFKKGAYMKVQ 1430

[Close]

BLAST of Cmc04g0104641 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 63/207 (30.43%), Postives = 99/207 (47.83%), Query Frame = 0


Query: 2    SHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLFS 61
            +HFI   KT  A  + DL F+ +   HG   +I SDRDV+  +  ++ L  +LG K   S
Sbjct: 1201 AHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMS 1260

Query: 62   TTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEIA 121
            +  HP TDGQ+E   + L  LL      N++ W      +E  YN     T   S FEI 
Sbjct: 1261 SANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEID 1320

Query: 122  YGLTPVDLLPLPTNKFVHLDAKSKTEFVKKLHK---KVKERIEKHNDKVAKRVNQGRIPL 181
             G  P +   + ++  V+  + +  E  K L     + KE++E    ++    NQ R PL
Sbjct: 1321 LGYLP-NTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPL 1380

Query: 182  ILKLGNWVWIFFGRSIFQTKGSPIYIQ 206
            +L +G+ V +   R  +  KG+ + +Q
Sbjct: 1381 LLNIGDHVLVH--RDAYFKKGAYMKVQ 1404

[Close]

BLAST of Cmc04g0104641 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 53/169 (31.36%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+  + C K+  A+  A +F + V+   G    I++D D  F S  WK    K    + F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            S    P TDGQTE  N+ +  LL  +   +   W +  S V+ +YN AIHS T+ + FEI
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  AYGLTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAK 170
             +  +P  L PL    F     ++  E + ++ + VKE +  +N K+ K
Sbjct: 1134 VHRYSPA-LSPLELPSFSDKTDENSQETI-QVFQTVKEHLNTNNIKMKK 1180

[Close]

BLAST of Cmc04g0104641 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 53/169 (31.36%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+  + C K+  A+  A +F + V+   G    I++D D  F S  WK    K    + F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            S    P TDGQTE  N+ +  LL  +   +   W +  S V+ +YN AIHS T+ + FEI
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  AYGLTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAK 170
             +  +P  L PL    F     ++  E + ++ + VKE +  +N K+ K
Sbjct: 1134 VHRYSPA-LSPLELPSFSDKTDENSQETI-QVFQTVKEHLNTNNIKMKK 1180

[Close]

BLAST of Cmc04g0104641 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 53/169 (31.36%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+  + C K+  A+  A +F + V+   G    I++D D  F S  WK    K    + F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            S    P TDGQTE  N+ +  LL  +   +   W +  S V+ +YN AIHS T+ + FEI
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  AYGLTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAK 170
             +  +P  L PL    F     ++  E + ++ + VKE +  +N K+ K
Sbjct: 1134 VHRYSPA-LSPLELPSFSDKTDENSQETI-QVFQTVKEHLNTNNIKMKK 1180

[Close]

BLAST of Cmc04g0104641 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.9e-69
Identity = 125/201 (62.19%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+HFI CHKTD AK +ADLFF+EVVRLHGI  +IVSDRDVK LSHFW+VLWGKLGTKL++
Sbjct: 983  MAHFIPCHKTDDAKLIADLFFREVVRLHGIPRTIVSDRDVKXLSHFWRVLWGKLGTKLVY 1042

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            STTCHP TDGQTEVVNR ++T+L  I++KNL+ W++    +E AYNRA+H TTKC+ FEI
Sbjct: 1043 STTCHPQTDGQTEVVNRTMVTMLRAIIDKNLKTWEDCLPLIEFAYNRAVHXTTKCTPFEI 1102

Query: 121  AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
             YG   ++P+DLLP+P N+FV  DA +K + V +LHK+VKERIEK N KVA R+N+GR  
Sbjct: 1103 VYGFNPISPLDLLPMPPNEFVSYDASTKVDLVHRLHKEVKERIEKQNTKVASRINKGRKL 1162

Query: 181  LILKLGNWVWIFFGRSIFQTK 199
            L+   G+WVW+ F +  F T+
Sbjct: 1163 LVFXPGDWVWVHFRKERFPTQ 1183

[Close]

BLAST of Cmc04g0104641 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.9e-68
Identity = 133/211 (63.03%), Postives = 157/211 (74.41%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+HFI C+KTD A N+A+LFF+EVVRLHGI  +IVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 1153 MAHFIPCNKTDDATNIANLFFREVVRLHGIPKTIVSDRDVKFLSHFWKVLWGKLGTKLLF 1212

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            STTCHP TDGQTEVVNR L  LL  ++ KNL+ W+E   FVE AYNRAIHSTT CS FE+
Sbjct: 1213 STTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFVEFAYNRAIHSTTHCSPFEV 1272

Query: 121  AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
             YG   LTP+DL PLP N F    A S+ E++K LHK++KERIEK N K+  R NQGR  
Sbjct: 1273 VYGFNPLTPLDLSPLPPNMFTSDAASSRVEYIKTLHKEIKERIEKKNQKLVTRKNQGRKE 1332

Query: 181  LILKLGNWVWIFFGRSIF-QTKGSPIYIQGE 208
            LI K G+WVW+   +  F   + S +  QG+
Sbjct: 1333 LIFKPGDWVWVHLRKERFPDQRKSKLQQQGD 1363

[Close]

BLAST of Cmc04g0104641 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.2e-68
Identity = 141/209 (67.46%), Postives = 154/209 (73.68%), Query Frame = 0


Query: 1   MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
           MSHFI CHK D A +VA+LFF+EVVRLHGI SSIVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 216 MSHFIACHKADDANDVANLFFREVVRLHGIPSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 275

Query: 61  STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
           STTCHP TDGQTEVVNR LIT L  IL+KNLRMW+EI  FVE  YN+AIHSTTKCS FEI
Sbjct: 276 STTCHPQTDGQTEVVNRTLITSLRTILKKNLRMWEEILPFVEFTYNKAIHSTTKCSPFEI 335

Query: 121 AYGL---TPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
            YG    TP+DLLPLPTNKFV+LDAKSK EFVKKLHK+                      
Sbjct: 336 VYGFNPKTPLDLLPLPTNKFVNLDAKSKAEFVKKLHKQ---------------------- 395

Query: 181 LILKLGNWVWIFFGRSIFQTKGSPIYIQG 207
              ++G      F RSIFQTKGSP+  +G
Sbjct: 396 ---EIG--FEFIFERSIFQTKGSPVTSKG 397

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BLAST of Cmc04g0104641 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 9.3e-68
Identity = 130/198 (65.66%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1    MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
            M+HFI C+KTD A N+A+LFF+EVVRLHGI  +IVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 1153 MAHFIPCNKTDDATNIANLFFREVVRLHGIPKTIVSDRDVKFLSHFWKVLWGKLGTKLLF 1212

Query: 61   STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
            STTCHP TDGQTEVVNR L  LL  ++ KNL+ W+E   FVE AYNRAIHSTT CS FE+
Sbjct: 1213 STTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFVEFAYNRAIHSTTHCSPFEV 1272

Query: 121  AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
             YG   LTP+DL PLP N F    A S+ E++K LHK++KERIEK N K+  R NQGR  
Sbjct: 1273 VYGFNPLTPLDLSPLPPNMFTSDAASSRVEYIKTLHKEIKERIEKKNQKLVTRKNQGRKE 1332

Query: 181  LILKLGNWVWIFFGRSIF 196
            LI K G+WVW+   +  F
Sbjct: 1333 LIFKPGDWVWVHLRKERF 1350

[Close]

BLAST of Cmc04g0104641 vs. ExPASy TrEMBL
Match: A0A5A7VM01 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00490 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 9.3e-68
Identity = 130/198 (65.66%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 1   MSHFIGCHKTDYAKNVADLFFKEVVRLHGILSSIVSDRDVKFLSHFWKVLWGKLGTKLLF 60
           M+HFI C+KTD A N+A+LFF+EVVRLHGI  +IVSDRDVKFLSHFWKVLWGKLGTKLLF
Sbjct: 27  MAHFIPCNKTDDATNIANLFFREVVRLHGIPKTIVSDRDVKFLSHFWKVLWGKLGTKLLF 86

Query: 61  STTCHPHTDGQTEVVNRMLITLLMKILEKNLRMWKEIFSFVEIAYNRAIHSTTKCSSFEI 120
           STTCHP TDGQTEVVNR L  LL  ++ KNL+ W+E   FVE AYNRAIHSTT CS FE+
Sbjct: 87  STTCHPQTDGQTEVVNRTLGALLRSLISKNLKSWEETLPFVEFAYNRAIHSTTHCSPFEV 146

Query: 121 AYG---LTPVDLLPLPTNKFVHLDAKSKTEFVKKLHKKVKERIEKHNDKVAKRVNQGRIP 180
            YG   LTP+DL PLP N F    A S+ E++K LHK++KERIEK N K+  R NQGR  
Sbjct: 147 VYGFNPLTPLDLSPLPPNMFTSDAASSRVEYIKTLHKEIKERIEKKNQKLVTRKNQGRKE 206

Query: 181 LILKLGNWVWIFFGRSIF 196
           LI K G+WVW+   +  F
Sbjct: 207 LIFKPGDWVWVHLRKERF 224

The following BLAST results are available for this feature:

BLAST of Cmc04g0104641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157414.1	6.0e-69	62.19	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]	[more]
TYK02449.1	3.9e-68	63.03	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK19543.1	8.6e-68	67.46	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK22420.1	1.9e-67	65.66	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK26105.1	1.9e-67	65.66	F15O4.13 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0104641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	7.2e-17	30.43	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.2e-16	30.43	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.6e-14	31.36	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.6e-14	31.36	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.6e-14	31.36	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0104641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWE9	2.9e-69	62.19	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia...	[more]
A0A5D3BWE8	1.9e-68	63.03	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4...	[more]
A0A5D3D7R5	4.2e-68	67.46	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DRJ1	9.3e-68	65.66	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ...	[more]
A0A5A7VM01	9.3e-68	65.66	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cmc04g0104641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..163 e-value: 1.7E-29 score: 104.5
None	No IPR available	PANTHER	PTHR47266	FAMILY NOT NAMED	coord: 5..188
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..134 score: 11.280705
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0104641.1	Cmc04g0104641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding