Cmc04g0104591 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0104591
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 22459629 .. 22460276 (+)
RNA-Seq Expression	Cmc04g0104591
Synteny	Cmc04g0104591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAAACATCTTATATAGACAAAATTTTGTTAAGATATAAGATGCAGAATTCCAAAAAGGGTCTGCTTCCGTACAGATATGGAATTCATTTATTAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCATATGCTTCTGTTATTGGAAGCATGATGTATGCAATGTTATGTACTAGACTTGACATTTGCTATTCAATAGGGATAGTTAGTAGATATCAGACTAATCCTGGATGTGATCATTGGACAACCGTTAAGAATATTTTAAAATACCTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAAGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAAATGCTAGAAAGTTTACATCAAGATCAGTTTTCACTCTGAATAGAGGAGCAGTAGTGTGGAGAAGCATAAAAAAATCATGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTACCTGTGAAGCAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATTTGCCAATCACCTTATACTGTGACAATAGTGGTGCAGTTGCAAATTTACGAGAACCTAGAAGTTATAAATGA

mRNA sequence

ATGTCTCAAACATCTTATATAGACAAAATTTTGTTAAGATATAAGATGCAGAATTCCAAAAAGGGTCTGCTTCCGTACAGATATGGAATTCATTTATTAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCATATGCTTCTGTTATTGGAAGCATGATGTATGCAATGTTATGTACTAGACTTGACATTTGCTATTCAATAGGGATAGTTAGTAGATATCAGACTAATCCTGGATGTGATCATTGGACAACCGTTAAGAATATTTTAAAATACCTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAAGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAAATGCTAGAAAGTTTACATCAAGATCAGTTTTCACTCTGAATAGAGGAGCAGTAGTGTGGAGAAGCATAAAAAAATCATGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTACCTGTGAAGCAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATTTGCCAATCACCTTATACTGTGACAATAGTGGTGCAGTTGCAAATTTACGAGAACCTAGAAGTTATAAATGA

Coding sequence (CDS)

ATGTCTCAAACATCTTATATAGACAAAATTTTGTTAAGATATAAGATGCAGAATTCCAAAAAGGGTCTGCTTCCGTACAGATATGGAATTCATTTATTAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCATATGCTTCTGTTATTGGAAGCATGATGTATGCAATGTTATGTACTAGACTTGACATTTGCTATTCAATAGGGATAGTTAGTAGATATCAGACTAATCCTGGATGTGATCATTGGACAACCGTTAAGAATATTTTAAAATACCTTAGAAGAACAAAAGACTACATGCTTGTGTATGGTTCTAAAGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAAATGCTAGAAAGTTTACATCAAGATCAGTTTTCACTCTGAATAGAGGAGCAGTAGTGTGGAGAAGCATAAAAAAATCATGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTACCTGTGAAGCAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATTTGCCAATCACCTTATACTGTGACAATAGTGGTGCAGTTGCAAATTTACGAGAACCTAGAAGTTATAAATGA

Protein sequence

MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMMYAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK

Homology

[Close]

BLAST of Cmc04g0104591 vs. NCBI nr
Match: KAA0052272.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.3 bits (991), Expect = 1.7e-103
Identity = 185/215 (86.05%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKMQNSKK LLPYRYGIHL KEQCPKTPQEV+DMSNIPYAS +GS+M
Sbjct: 356 MSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKEQCPKTPQEVKDMSNIPYASAVGSLM 415

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           YAMLCTR DICYS+GIVSRYQ+NPG DHWT VKNILKYLRRTKDYMLVYGSKDLILT YT
Sbjct: 416 YAMLCTRPDICYSVGIVSRYQSNPGSDHWTAVKNILKYLRRTKDYMLVYGSKDLILTRYT 475

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           DSDFQ+DK+ RK TS SVFTLN  AVVW+ IK+SCIADSTMEAEYVA+CEAAKEAVWLKK
Sbjct: 476 DSDFQSDKDVRKSTSESVFTLNGEAVVWKRIKQSCIADSTMEAEYVASCEAAKEAVWLKK 535

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDLE+VPN+HLPITLYCDNSGAVAN +EPRS+K
Sbjct: 536 FLTDLEIVPNIHLPITLYCDNSGAVANSQEPRSHK 570

[Close]

BLAST of Cmc04g0104591 vs. NCBI nr
Match: TYK11050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.7e-103
Identity = 187/215 (86.98%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKMQNSKKGLLPYRYGIHL KEQCPKTPQEVEDMSNIPYAS IGS+M
Sbjct: 122 MSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLM 181

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           YAMLCTR+DICYS+GIV+RYQ+NPG DHWT VKNILKYLRRTKDYMLVYGSKDLILTGYT
Sbjct: 182 YAMLCTRVDICYSVGIVNRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYGSKDLILTGYT 241

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           DSDFQTDK+ARK TS S+FTLN GAVVW+SIK+SCIA STMEA+YVA  EAAKEAV  KK
Sbjct: 242 DSDFQTDKDARKSTSGSIFTLNEGAVVWKSIKQSCIAHSTMEAKYVAAYEAAKEAVCFKK 301

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDLEVVPNMHLPITLYCDNSGAV N R PRS+K
Sbjct: 302 FLTDLEVVPNMHLPITLYCDNSGAVTNSRAPRSHK 336

[Close]

BLAST of Cmc04g0104591 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.8 bits (987), Expect = 4.9e-103
Identity = 187/215 (86.98%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKM NSKKGLLPYRYGIHL KEQCPKTPQEVEDMSNIPYAS +GS+M
Sbjct: 477 MSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSLM 536

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           Y MLCTR +ICYS+GIVSR Q+ PG DHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT
Sbjct: 537 YVMLCTRPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 596

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           D  FQTDK+ARK TS  VFT+N GAVVWRSIK+SCIADSTMEAEYVATCEAAKEAVWLKK
Sbjct: 597 DFYFQTDKDARKSTSGLVFTMNGGAVVWRSIKQSCIADSTMEAEYVATCEAAKEAVWLKK 656

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDLEVVPNMHLP TLYCDNSGAV N REPRS+K
Sbjct: 657 FLTDLEVVPNMHLPFTLYCDNSGAVVNSREPRSHK 691

[Close]

BLAST of Cmc04g0104591 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 384.4 bits (986), Expect = 6.4e-103
Identity = 182/215 (84.65%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1    MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
            MSQ SYIDK+L RYKMQNSKKG LP+R+GIHL KEQCPKTPQEVEDM NIPY+S +GS+M
Sbjct: 1053 MSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLM 1112

Query: 61   YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
            YAMLCTR DICYS+GIVSRYQ+NPG DHWT VKNILKYLRRT++YMLVYG+KDLILTGYT
Sbjct: 1113 YAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYT 1172

Query: 121  DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
            DSDFQ+DK+ARK TS SVFTLN GAVVWRS+K++CIADSTMEAEYVA CEAAKEAVWL+K
Sbjct: 1173 DSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRK 1232

Query: 181  FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
            FLTDLEVVPNMHLPITLYCDNSGAVAN +EPRS+K
Sbjct: 1233 FLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHK 1267

[Close]

BLAST of Cmc04g0104591 vs. NCBI nr
Match: TYK04838.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101
Identity = 184/215 (85.58%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKMQNSKKGLLPY+YGIHL KEQC KTPQEVEDM NIPYAS +GS+M
Sbjct: 1   MSQTSYIDKMLSRYKMQNSKKGLLPYKYGIHLSKEQCSKTPQEVEDMINIPYASAVGSLM 60

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           YAMLCTRLDICYS+GIVSRYQ+N   DHWT VKNILKYLRRTKDYML+YGSKDLILTGYT
Sbjct: 61  YAMLCTRLDICYSVGIVSRYQSNLERDHWTAVKNILKYLRRTKDYMLLYGSKDLILTGYT 120

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           DSDFQTDKNARK TS SVFTLN GAVVWRSIK+SC ADSTMEAEYVA CE AKE VWLKK
Sbjct: 121 DSDFQTDKNARKSTSISVFTLNGGAVVWRSIKQSCTADSTMEAEYVAACEVAKEVVWLKK 180

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDL+V PNMH PITLYCDNSG VAN +EPRS+K
Sbjct: 181 FLTDLKVAPNMHQPITLYCDNSGVVANSQEPRSHK 215

[Close]

BLAST of Cmc04g0104591 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.7e-46
Identity = 89/205 (43.41%), Postives = 134/205 (65.37%), Query Frame = 0


Query: 1    MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
            +SQ  YI+++L R+ M+N+K    P    + L K+ CP T +E  +M+ +PY+S +GS+M
Sbjct: 1060 LSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLM 1119

Query: 61   YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
            YAM+CTR DI +++G+VSR+  NPG +HW  VK IL+YLR T    L +G  D IL GYT
Sbjct: 1120 YAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYT 1179

Query: 121  DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
            D+D   D + RK ++  +FT + GA+ W+S  + C+A ST EAEY+A  E  KE +WLK+
Sbjct: 1180 DADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKR 1239

Query: 181  FLTDLEVVPNMHLPITLYCDNSGAV 206
            FL +L +    ++   +YCD+  A+
Sbjct: 1240 FLQELGLHQKEYV---VYCDSQSAI 1261

[Close]

BLAST of Cmc04g0104591 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 73/222 (32.88%), Postives = 123/222 (55.41%), Query Frame = 0


Query: 1    MSQTSYIDKILLRYKMQ--NSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGS 60
            +SQ++Y+ KIL ++ M+  N+    LP +    LL           ++  N P  S+IG 
Sbjct: 1137 LSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS---------DEDCNTPCRSLIGC 1196

Query: 61   MMYAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLI--- 120
            +MY MLCTR D+  ++ I+SRY +    + W  +K +L+YL+ T D  L++  K+L    
Sbjct: 1197 LMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF-KKNLAFEN 1256

Query: 121  -LTGYTDSDFQTDKNARKFTSRSVFTL-NRGAVVWRSIKKSCIADSTMEAEYVATCEAAK 180
             + GY DSD+   +  RK T+  +F + +   + W + +++ +A S+ EAEY+A  EA +
Sbjct: 1257 KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVR 1316

Query: 181  EAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
            EA+WLK  LT + +   +  PI +Y DN G ++    P  +K
Sbjct: 1317 EALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHK 1346

[Close]

BLAST of Cmc04g0104591 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-24
Identity = 55/133 (41.35%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 47  MSNIPYASVIGSMMYAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYM 106
           M N+PY S +G++MY M+ TR D+  ++G++S++ ++P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 107 LVYGSKDLI-LTGYTDSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEY 166
           L +       L GY+D+D+  D  +R+ TS  +F LN G V WRS K+  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 167 VATCEAAKEAVWL 179
           +A  EA +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc04g0104591 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-18
Identity = 60/205 (29.27%), Postives = 95/205 (46.34%), Query Frame = 0


Query: 1    MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
            +SQ  Y   +L R  M  +K    P      L      K P   E      Y  ++GS+ 
Sbjct: 1183 LSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE------YRGIVGSLQ 1242

Query: 61   YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDY-MLVYGSKDLILTGY 120
            Y +  TR D+ Y++  +S+Y   P  DHW  +K +L+YL  T D+ + +     L L  Y
Sbjct: 1243 Y-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAY 1302

Query: 121  TDSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLK 180
            +D+D+  D +    T+  +  L    + W S K+  +  S+ EAEY +    + E  W+ 
Sbjct: 1303 SDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWIC 1362

Query: 181  KFLTDLEVVPNMHLPITLYCDNSGA 205
              LT+L +   +  P  +YCDN GA
Sbjct: 1363 SLLTELGI--QLSHPPVIYCDNVGA 1378

[Close]

BLAST of Cmc04g0104591 vs. ExPASy TrEMBL
Match: A0A5A7U945 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001000 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.1e-104
Identity = 185/215 (86.05%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKMQNSKK LLPYRYGIHL KEQCPKTPQEV+DMSNIPYAS +GS+M
Sbjct: 356 MSQTSYIDKMLSRYKMQNSKKSLLPYRYGIHLSKEQCPKTPQEVKDMSNIPYASAVGSLM 415

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           YAMLCTR DICYS+GIVSRYQ+NPG DHWT VKNILKYLRRTKDYMLVYGSKDLILT YT
Sbjct: 416 YAMLCTRPDICYSVGIVSRYQSNPGSDHWTAVKNILKYLRRTKDYMLVYGSKDLILTRYT 475

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           DSDFQ+DK+ RK TS SVFTLN  AVVW+ IK+SCIADSTMEAEYVA+CEAAKEAVWLKK
Sbjct: 476 DSDFQSDKDVRKSTSESVFTLNGEAVVWKRIKQSCIADSTMEAEYVASCEAAKEAVWLKK 535

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDLE+VPN+HLPITLYCDNSGAVAN +EPRS+K
Sbjct: 536 FLTDLEIVPNIHLPITLYCDNSGAVANSQEPRSHK 570

[Close]

BLAST of Cmc04g0104591 vs. ExPASy TrEMBL
Match: A0A5D3CI71 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.8e-103
Identity = 187/215 (86.98%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKMQNSKKGLLPYRYGIHL KEQCPKTPQEVEDMSNIPYAS IGS+M
Sbjct: 122 MSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLM 181

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           YAMLCTR+DICYS+GIV+RYQ+NPG DHWT VKNILKYLRRTKDYMLVYGSKDLILTGYT
Sbjct: 182 YAMLCTRVDICYSVGIVNRYQSNPGRDHWTAVKNILKYLRRTKDYMLVYGSKDLILTGYT 241

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           DSDFQTDK+ARK TS S+FTLN GAVVW+SIK+SCIA STMEA+YVA  EAAKEAV  KK
Sbjct: 242 DSDFQTDKDARKSTSGSIFTLNEGAVVWKSIKQSCIAHSTMEAKYVAAYEAAKEAVCFKK 301

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDLEVVPNMHLPITLYCDNSGAV N R PRS+K
Sbjct: 302 FLTDLEVVPNMHLPITLYCDNSGAVTNSRAPRSHK 336

[Close]

BLAST of Cmc04g0104591 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 187/215 (86.98%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKM NSKKGLLPYRYGIHL KEQCPKTPQEVEDMSNIPYAS +GS+M
Sbjct: 477 MSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSLM 536

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           Y MLCTR +ICYS+GIVSR Q+ PG DHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT
Sbjct: 537 YVMLCTRPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 596

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           D  FQTDK+ARK TS  VFT+N GAVVWRSIK+SCIADSTMEAEYVATCEAAKEAVWLKK
Sbjct: 597 DFYFQTDKDARKSTSGLVFTMNGGAVVWRSIKQSCIADSTMEAEYVATCEAAKEAVWLKK 656

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDLEVVPNMHLP TLYCDNSGAV N REPRS+K
Sbjct: 657 FLTDLEVVPNMHLPFTLYCDNSGAVVNSREPRSHK 691

[Close]

BLAST of Cmc04g0104591 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.1e-103
Identity = 182/215 (84.65%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1    MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
            MSQ SYIDK+L RYKMQNSKKG LP+R+GIHL KEQCPKTPQEVEDM NIPY+S +GS+M
Sbjct: 1053 MSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLM 1112

Query: 61   YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
            YAMLCTR DICYS+GIVSRYQ+NPG DHWT VKNILKYLRRT++YMLVYG+KDLILTGYT
Sbjct: 1113 YAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYT 1172

Query: 121  DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
            DSDFQ+DK+ARK TS SVFTLN GAVVWRS+K++CIADSTMEAEYVA CEAAKEAVWL+K
Sbjct: 1173 DSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRK 1232

Query: 181  FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
            FLTDLEVVPNMHLPITLYCDNSGAVAN +EPRS+K
Sbjct: 1233 FLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHK 1267

[Close]

BLAST of Cmc04g0104591 vs. ExPASy TrEMBL
Match: A0A5D3C0P2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00160 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.8e-102
Identity = 184/215 (85.58%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 1   MSQTSYIDKILLRYKMQNSKKGLLPYRYGIHLLKEQCPKTPQEVEDMSNIPYASVIGSMM 60
           MSQTSYIDK+L RYKMQNSKKGLLPY+YGIHL KEQC KTPQEVEDM NIPYAS +GS+M
Sbjct: 1   MSQTSYIDKMLSRYKMQNSKKGLLPYKYGIHLSKEQCSKTPQEVEDMINIPYASAVGSLM 60

Query: 61  YAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYT 120
           YAMLCTRLDICYS+GIVSRYQ+N   DHWT VKNILKYLRRTKDYML+YGSKDLILTGYT
Sbjct: 61  YAMLCTRLDICYSVGIVSRYQSNLERDHWTAVKNILKYLRRTKDYMLLYGSKDLILTGYT 120

Query: 121 DSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCEAAKEAVWLKK 180
           DSDFQTDKNARK TS SVFTLN GAVVWRSIK+SC ADSTMEAEYVA CE AKE VWLKK
Sbjct: 121 DSDFQTDKNARKSTSISVFTLNGGAVVWRSIKQSCTADSTMEAEYVAACEVAKEVVWLKK 180

Query: 181 FLTDLEVVPNMHLPITLYCDNSGAVANLREPRSYK 216
           FLTDL+V PNMH PITLYCDNSG VAN +EPRS+K
Sbjct: 181 FLTDLKVAPNMHQPITLYCDNSGVVANSQEPRSHK 215

[Close]

BLAST of Cmc04g0104591 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 88.2 bits (217), Expect = 8.8e-18
Identity = 50/155 (32.26%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 52  YASVIGSMMYAMLCTRLDICYSIGIVSRYQTNPGCDHWTTVKNILKYLRRTKDYMLVYGS 111
           Y  +IG +MY  + TRLDI +++  +S++   P   H   V  IL Y++ T    L Y S
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 112 K-DLILTGYTDSDFQTDKNARKFTSRSVFTLNRGAVVWRSIKKSCIADSTMEAEYVATCE 171
           + ++ L  ++D+ FQ+ K+ R+ T+     L    + W+S K+  ++ S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 172 AAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAV 206
           A  E +WL +F  +L++   +  P  L+CDN+ A+
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAI 529

The following BLAST results are available for this feature:

BLAST of Cmc04g0104591 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052272.1	1.7e-103	86.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK11050.1	3.7e-103	86.98	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	4.9e-103	86.98	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	6.4e-103	84.65	gag/pol protein, partial [Bryonia dioica]	[more]
TYK04838.1	1.2e-101	85.58	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0104591 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.7e-46	43.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.5e-27	32.88	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	6.1e-24	41.35	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	3.8e-18	29.27	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc04g0104591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U945	8.1e-104	86.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G0010...	[more]
A0A5D3CI71	1.8e-103	86.98	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330...	[more]
A0A5D3BX45	2.4e-103	86.98	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	3.1e-103	84.65	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3C0P2	5.8e-102	85.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G0016...	[more]

BLAST of Cmc04g0104591 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.8e-18	32.26	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 144..204
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 144..204
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 117..213 e-value: 3.62062E-36 score: 122.192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0104591.1	Cmc04g0104591.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding