Cmc04g0104081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0104081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	CMiso1.1chr04: 21470928 .. 21471791 (+)
RNA-Seq Expression	Cmc04g0104081
Synteny	Cmc04g0104081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAAGATCTCAAAAAGGCGATGACCCAAGAATTTGAAATGACAGATATAGGACTGATGTCATATTATCTTGACATTGAGGTGAAACAGTCAAAGGAAGGTATTTTCATCTATCAAGAGCGATATACTATAGAAGTTCTAGAAAAGTTCAATATGATCAATTTTAATCCTGTCACAACTCCAATTGAAACTGAGACCAAACTGTCTAAATATGAAGAAGGAAATGTTGATCCTTCATATTTCAAAAGTTCGGTTAGGAGTTTTAGATATTTGACTTGCACACGACCAGATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTATAACTACTAATTTGAAAGTGGCAAAGAGAATTCTTTGTTACCTCAAAGGTACGCTTGACTATGGATTATTTTATTCTTCATCTAAAGAGTTCAAGCTTGAAGGCTATTGTGATAGTGAATGGGTTGGAGATACGAATGATCAAAAGAGCACTAGTGGATATGTTTTCTTTCTTGGTAATACTACATTTACTTGGAATTCTAAGAAGCAACCTATTTTGACATTATCCACTTGTGAGGCAAAATACGTTGCTGCAGCTTCATGTGTCTGTCATGCAGTTTGGTTAAGAAATTTATTAAAAACAGTTGGAATTTTGGAAGATGATCCAACTATGATACATGTAGACAATAAGTCAACAATTGCTCTAGCAAAGAATCCTGTGTTCCATGATCGTAACAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAGGTTCAAGTTGAATATATGAAGACTAAAGATCAAATTACAGATATCTTCACGAAGCCACTCAAAATTAGTGGTTAA

mRNA sequence

ATGTTTGAAGATCTCAAAAAGGCGATGACCCAAGAATTTGAAATGACAGATATAGGACTGATGTCATATTATCTTGACATTGAGGTGAAACAGTCAAAGGAAGGTATTTTCATCTATCAAGAGCGATATACTATAGAAGTTCTAGAAAAGTTCAATATGATCAATTTTAATCCTGTCACAACTCCAATTGAAACTGAGACCAAACTGTCTAAATATGAAGAAGGAAATGTTGATCCTTCATATTTCAAAAGTTCGGTTAGGAGTTTTAGATATTTGACTTGCACACGACCAGATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTATAACTACTAATTTGAAAGTGGCAAAGAGAATTCTTTGTTACCTCAAAGGTACGCTTGACTATGGATTATTTTATTCTTCATCTAAAGAGTTCAAGCTTGAAGGCTATTGTGATAGTGAATGGGTTGGAGATACGAATGATCAAAAGAGCACTAGTGGATATGTTTTCTTTCTTGGTAATACTACATTTACTTGGAATTCTAAGAAGCAACCTATTTTGACATTATCCACTTGTGAGGCAAAATACGTTGCTGCAGCTTCATGTGTCTGTCATGCAGTTTGGTTAAGAAATTTATTAAAAACAGTTGGAATTTTGGAAGATGATCCAACTATGATACATGTAGACAATAAGTCAACAATTGCTCTAGCAAAGAATCCTGTGTTCCATGATCGTAACAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAGGTTCAAGTTGAATATATGAAGACTAAAGATCAAATTACAGATATCTTCACGAAGCCACTCAAAATTAGTGGTTAA

Coding sequence (CDS)

ATGTTTGAAGATCTCAAAAAGGCGATGACCCAAGAATTTGAAATGACAGATATAGGACTGATGTCATATTATCTTGACATTGAGGTGAAACAGTCAAAGGAAGGTATTTTCATCTATCAAGAGCGATATACTATAGAAGTTCTAGAAAAGTTCAATATGATCAATTTTAATCCTGTCACAACTCCAATTGAAACTGAGACCAAACTGTCTAAATATGAAGAAGGAAATGTTGATCCTTCATATTTCAAAAGTTCGGTTAGGAGTTTTAGATATTTGACTTGCACACGACCAGATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTATAACTACTAATTTGAAAGTGGCAAAGAGAATTCTTTGTTACCTCAAAGGTACGCTTGACTATGGATTATTTTATTCTTCATCTAAAGAGTTCAAGCTTGAAGGCTATTGTGATAGTGAATGGGTTGGAGATACGAATGATCAAAAGAGCACTAGTGGATATGTTTTCTTTCTTGGTAATACTACATTTACTTGGAATTCTAAGAAGCAACCTATTTTGACATTATCCACTTGTGAGGCAAAATACGTTGCTGCAGCTTCATGTGTCTGTCATGCAGTTTGGTTAAGAAATTTATTAAAAACAGTTGGAATTTTGGAAGATGATCCAACTATGATACATGTAGACAATAAGTCAACAATTGCTCTAGCAAAGAATCCTGTGTTCCATGATCGTAACAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAGGTTCAAGTTGAATATATGAAGACTAAAGATCAAATTACAGATATCTTCACGAAGCCACTCAAAATTAGTGGTTAA

Protein sequence

MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETKLSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKISG

Homology

[Close]

BLAST of Cmc04g0104081 vs. NCBI nr
Match: KAA0054829.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK27779.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 566.2 bits (1458), Expect = 1.6e-157
Identity = 278/279 (99.64%), Postives = 279/279 (100.00%), Query Frame = 0


Query: 9   MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK 68
           MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK
Sbjct: 1   MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK 60

Query: 69  LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL 128
           LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL
Sbjct: 61  LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL 120

Query: 129 KGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL 188
           KGTLDYGLFYSSSKEFKL+GYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL
Sbjct: 121 KGTLDYGLFYSSSKEFKLDGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL 180

Query: 189 STCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKHI 248
           STCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKHI
Sbjct: 181 STCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKHI 240

Query: 249 DTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKISG 288
           DTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKISG
Sbjct: 241 DTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKISG 279

[Close]

BLAST of Cmc04g0104081 vs. NCBI nr
Match: TYK03241.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 508.4 bits (1308), Expect = 3.9e-140
Identity = 250/287 (87.11%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 930  MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 989

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 990  TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1049

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1050 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1109

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IHVDNKSTIALAKNP
Sbjct: 1110 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDNKSTIALAKNP 1169

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1170 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1216

[Close]

BLAST of Cmc04g0104081 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 508.1 bits (1307), Expect = 5.1e-140
Identity = 249/287 (86.76%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 1033 MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 1092

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 1093 TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1152

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1153 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1212

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IH+DNKSTIALAKNP
Sbjct: 1213 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNP 1272

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1273 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1319

[Close]

BLAST of Cmc04g0104081 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 508.1 bits (1307), Expect = 5.1e-140
Identity = 249/287 (86.76%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 1033 MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 1092

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 1093 TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1152

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1153 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1212

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IH+DNKSTIALAKNP
Sbjct: 1213 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNP 1272

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1273 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1319

[Close]

BLAST of Cmc04g0104081 vs. NCBI nr
Match: TYK13816.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 508.1 bits (1307), Expect = 5.1e-140
Identity = 249/287 (86.76%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 1058 MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 1117

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 1118 TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1177

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1178 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1237

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IH+DNKSTIALAKNP
Sbjct: 1238 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNP 1297

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1298 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1344

[Close]

BLAST of Cmc04g0104081 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 9.3e-52
Identity = 107/276 (38.77%), Postives = 161/276 (58.33%), Query Frame = 0


Query: 9    MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK 68
            ++Q F + D   + Y+L IE K+   G+ + Q RY +++L + NMI   PVTTP+    K
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230

Query: 69   LSKYEEGNV-DPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCY 128
            LS Y    + DP+ ++  V S +YL  TRPDI ++V  +S+FM  P   +L+  KRIL Y
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRY 1290

Query: 129  LKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILT 188
            L GT ++G+F        L  Y D++W GD +D  ST+GY+ +LG+   +W+SKKQ  + 
Sbjct: 1291 LAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVV 1350

Query: 189  LSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKH 248
             S+ EA+Y + A+      W+ +LL  +GI    P +I+ DN     L  NPVFH R KH
Sbjct: 1351 RSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKH 1410

Query: 249  IDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPL 284
            I   +HFIR+ +    ++V ++ T DQ+ D  TKPL
Sbjct: 1411 IAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPL 1446

[Close]

BLAST of Cmc04g0104081 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 9.3e-52
Identity = 103/277 (37.18%), Postives = 163/277 (58.84%), Query Frame = 0


Query: 8    AMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETET 67
            A++Q F + +   + Y+L IE K+  +G+ + Q RYT+++L + NM+   PV TP+ T  
Sbjct: 1153 ALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSP 1212

Query: 68   KLSKYEEGNV-DPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILC 127
            KL+ +    + DP+ ++  V S +YL  TRPD+ ++V  +S++M  P   +    KR+L 
Sbjct: 1213 KLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLR 1272

Query: 128  YLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPIL 187
            YL GT D+G+F        L  Y D++W GDT+D  ST+GY+ +LG+   +W+SKKQ  +
Sbjct: 1273 YLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGV 1332

Query: 188  TLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNK 247
              S+ EA+Y + A+      W+ +LL  +GI    P +I+ DN     L  NPVFH R K
Sbjct: 1333 VRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMK 1392

Query: 248  HIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPL 284
            HI   +HFIR+ +    ++V ++ T DQ+ D  TKPL
Sbjct: 1393 HIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPL 1429

[Close]

BLAST of Cmc04g0104081 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 189.5 bits (480), Expect = 5.3e-47
Identity = 98/284 (34.51%), Postives = 168/284 (59.15%), Query Frame = 0


Query: 4    DLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPI 63
            + K+ + ++F MTD+  + +++ I ++  ++ I++ Q  Y  ++L KFNM N N V+TP+
Sbjct: 1103 NFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL 1162

Query: 64   ETETKLSKYEEGNVDPSYFKSSVRSFRY-LTCTRPDILFSVGLVSRFMESPITTNLKVAK 123
             ++             +  +S +    Y + CTRPD+  +V ++SR+     +   +  K
Sbjct: 1163 PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLK 1222

Query: 124  RILCYLKGTLDYGLFYSSSKEF--KLEGYCDSEWVGDTNDQKSTSGYVFFLGN-TTFTWN 183
            R+L YLKGT+D  L +  +  F  K+ GY DS+W G   D+KST+GY+F + +     WN
Sbjct: 1223 RVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWN 1282

Query: 184  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 243
            +K+Q  +  S+ EA+Y+A    V  A+WL+ LL ++ I  ++P  I+ DN+  I++A NP
Sbjct: 1283 TKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNP 1342

Query: 244  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPL 284
              H R KHID ++HF R+ +    + +EY+ T++Q+ DIFTKPL
Sbjct: 1343 SCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPL 1386

[Close]

BLAST of Cmc04g0104081 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-45
Identity = 104/287 (36.24%), Postives = 170/287 (59.23%), Query Frame = 0


Query: 5    LKKAMTQEFEMTDIGLMSYYLDIEV--KQSKEGIFIYQERYTIEVLEKFNMINFNPVTTP 64
            LK  +++ F+M D+G     L +++  +++   +++ QE+Y   VLE+FNM N  PV+TP
Sbjct: 1025 LKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP 1084

Query: 65   IETETKLSK-------YEEGNVDPSYFKSSVRSFRY-LTCTRPDILFSVGLVSRFMESPI 124
            +    KLSK        E+GN+    + S+V S  Y + CTRPDI  +VG+VSRF+E+P 
Sbjct: 1085 LAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPG 1144

Query: 125  TTNLKVAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNT 184
              + +  K IL YL+GT    L +  S    L+GY D++  GD +++KS++GY+F     
Sbjct: 1145 KEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGG 1204

Query: 185  TFTWNSKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIA 244
              +W SK Q  + LST EA+Y+AA       +WL+  L+ +G L     +++ D++S I 
Sbjct: 1205 AISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELG-LHQKEYVVYCDSQSAID 1264

Query: 245  LAKNPVFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTK 282
            L+KN ++H R KHID R+H+IR+ +  + ++V  + T +   D+ TK
Sbjct: 1265 LSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTK 1309

[Close]

BLAST of Cmc04g0104081 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-33
Identity = 67/199 (33.67%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 9   MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK 68
           ++  F M D+G + Y+L I++K    G+F+ Q +Y  ++L    M++  P++TP+  +  
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 69  LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL 128
            S       DPS F+S V + +YLT TRPDI ++V +V + M  P   +  + KR+L Y+
Sbjct: 87  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 146

Query: 129 KGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL 188
           KGT+ +GL+   + +  ++ +CDS+W G T+ ++ST+G+  FLG    +W++K+QP ++ 
Sbjct: 147 KGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSR 206

Query: 189 STCEAKYVAAASCVCHAVW 208
           S+ E +Y A A       W
Sbjct: 207 SSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc04g0104081 vs. ExPASy TrEMBL
Match: A0A5A7UMY4 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00470 PE=4 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 7.6e-158
Identity = 278/279 (99.64%), Postives = 279/279 (100.00%), Query Frame = 0


Query: 9   MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK 68
           MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK
Sbjct: 1   MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK 60

Query: 69  LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL 128
           LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL
Sbjct: 61  LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL 120

Query: 129 KGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL 188
           KGTLDYGLFYSSSKEFKL+GYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL
Sbjct: 121 KGTLDYGLFYSSSKEFKLDGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL 180

Query: 189 STCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKHI 248
           STCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKHI
Sbjct: 181 STCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVFHDRNKHI 240

Query: 249 DTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKISG 288
           DTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKISG
Sbjct: 241 DTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKISG 279

[Close]

BLAST of Cmc04g0104081 vs. ExPASy TrEMBL
Match: A0A5D3BU42 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00570 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.9e-140
Identity = 250/287 (87.11%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 930  MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 989

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 990  TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1049

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1050 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1109

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IHVDNKSTIALAKNP
Sbjct: 1110 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDNKSTIALAKNP 1169

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1170 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1216

[Close]

BLAST of Cmc04g0104081 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.5e-140
Identity = 249/287 (86.76%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 1033 MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 1092

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 1093 TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1152

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1153 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1212

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IH+DNKSTIALAKNP
Sbjct: 1213 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNP 1272

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1273 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1319

[Close]

BLAST of Cmc04g0104081 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.5e-140
Identity = 249/287 (86.76%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 1033 MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 1092

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 1093 TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1152

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1153 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1212

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IH+DNKSTIALAKNP
Sbjct: 1213 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNP 1272

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1273 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1319

[Close]

BLAST of Cmc04g0104081 vs. ExPASy TrEMBL
Match: A0A5D3D497 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00810 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.5e-140
Identity = 249/287 (86.76%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1    MFEDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVT 60
            MFEDLKKAMTQEFEMTDIGLMSYYL IEVKQS+EGIFI QERYT E+LEKFNM+N  PV 
Sbjct: 1033 MFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVA 1092

Query: 61   TPIETETKLSKYEEG-NVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLK 120
            TPIET TKLSK+EEG +VDPSYFKS V S RYLTCTRPDILFSVGLVSRFMESP TT+LK
Sbjct: 1093 TPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLK 1152

Query: 121  VAKRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWN 180
            VAKRIL YL+GTLDYGLFYSSSKEFKLEGYCDS+W GDTND+KSTSGYVFF+GNT FTW+
Sbjct: 1153 VAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWS 1212

Query: 181  SKKQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNP 240
            SKKQPI+TLSTCEA+YVAAASCVCHAVWLRNLLKTVGIL++DPT+IH+DNKSTIALAKNP
Sbjct: 1213 SKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNP 1272

Query: 241  VFHDRNKHIDTRFHFIRDCISRKEVQVEYMKTKDQITDIFTKPLKIS 287
            VFHDR+KHIDTRFHFIRDCISRKEVQVEY+KT+DQI DIFTKPLK++
Sbjct: 1273 VFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVN 1319

[Close]

BLAST of Cmc04g0104081 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-41
Identity = 83/256 (32.42%), Postives = 149/256 (58.20%), Query Frame = 0


Query: 3   EDLKKAMTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTP 62
           ++LK  +   F++ D+G + Y+L +E+ +S  GI I Q +Y +++L++  ++   P + P
Sbjct: 298 DELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVP 357

Query: 63  IETETKLSKYEEGN-VDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVA 122
           ++     S +  G+ VD   ++  +    YL  TR DI F+V  +S+F E+P   + +  
Sbjct: 358 MDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAV 417

Query: 123 KRILCYLKGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSK 182
            +IL Y+KGT+  GLFYSS  E +L+ + D+ +    + ++ST+GY  FLG +  +W SK
Sbjct: 418 MKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSK 477

Query: 183 KQPILTLSTCEAKYVAAASCVCHAVWLRNLLKTVGILEDDPTMIHVDNKSTIALAKNPVF 242
           KQ +++ S+ EA+Y A +      +WL    + + +    PT++  DN + I +A N VF
Sbjct: 478 KQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVF 537

Query: 243 HDRNKHIDTRFHFIRD 258
           H+R KHI++  H +R+
Sbjct: 538 HERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc04g0104081 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-34
Identity = 67/199 (33.67%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 9   MTQEFEMTDIGLMSYYLDIEVKQSKEGIFIYQERYTIEVLEKFNMINFNPVTTPIETETK 68
           ++  F M D+G + Y+L I++K    G+F+ Q +Y  ++L    M++  P++TP+  +  
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 69  LSKYEEGNVDPSYFKSSVRSFRYLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYL 128
            S       DPS F+S V + +YLT TRPDI ++V +V + M  P   +  + KR+L Y+
Sbjct: 87  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 146

Query: 129 KGTLDYGLFYSSSKEFKLEGYCDSEWVGDTNDQKSTSGYVFFLGNTTFTWNSKKQPILTL 188
           KGT+ +GL+   + +  ++ +CDS+W G T+ ++ST+G+  FLG    +W++K+QP ++ 
Sbjct: 147 KGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSR 206

Query: 189 STCEAKYVAAASCVCHAVW 208
           S+ E +Y A A       W
Sbjct: 207 SSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc04g0104081 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-12
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 91  YLTCTRPDILFSVGLVSRFMESPITTNLKVAKRILCYLKGTLDYGLFYSSSKEFKLEGYC 150
           YLT TRPD+ F+V  +S+F  +  T  ++   ++L Y+KGT+  GLFYS++ + +L+ + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 151 DSEWVGDTNDQKSTSGY-----VFFLG 173
           DS+W    + ++S +G+     ++FLG
Sbjct: 62  DSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:

BLAST of Cmc04g0104081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054829.1	1.6e-157	99.64	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
TYK03241.1	3.9e-140	87.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	5.1e-140	86.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	5.1e-140	86.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK13816.1	5.1e-140	86.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc04g0104081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	9.3e-52	38.77	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.3e-52	37.18	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	5.3e-47	34.51	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	2.9e-45	36.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	1.9e-33	33.67	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0104081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMY4	7.6e-158	99.64	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5D3BU42	1.9e-140	87.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	2.5e-140	86.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	2.5e-140	86.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D497	2.5e-140	86.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc04g0104081 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-41	32.42	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.4e-34	33.67	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	4.3e-12	35.63	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..63 e-value: 2.1E-12 score: 47.2
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 157..283
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 157..283
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 147..283 e-value: 2.74722E-76 score: 226.966

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0104081.1	Cmc04g0104081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding