Cmc04g0102931 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0102931
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 19822756 .. 19824468 (+)
RNA-Seq Expression	Cmc04g0102931
Synteny	Cmc04g0102931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTATAAGAATGGTGTACATATTTGTTCAGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTAAACAAGTTAAAAGATGTTTCATTACCTCCATGTGAATCTTGTCTTGAAGGTAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTTCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAGAGGAGAAATAGAACCTTGTTAAACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGCTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTATTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTTGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAAATCATAAACCACGAAGCAAATTAGTATTAAGTGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGGGTTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGGTTGTATCACAACCTAACCGCTATTTGGGTTTAACTGAAACTCAAGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGGTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAGACCTTTAAAGCTAGACTTGTGGCAAAAGGGTATACCCAAGGGAAGGGGTTGACTATGAGGAAACTTTCTCTCCTGTTGCTATGTTAA

mRNA sequence

ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTATAAGAATGGTGTACATATTTGTTCAGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTAAACAAGTTAAAAGATGTTTCATTACCTCCATGTGAATCTTGTCTTGAAGGTAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTTCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAGAGGAGAAATAGAACCTTGTTAAACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGCTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTATTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTTGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAAATCATAAACCACGAAGCAAATTAGTATTAAGTGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGGGTTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGGTTGTATCACAACCTAACCGCTATTTGGGTTTAACTGAAACTCAAGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGGTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAGACCTTTAAAGCTAGACTTGTGGCAAAAGGGTATACCCAAGGGAAGGGGTTGACTATGAGGAAACTTTCTCTCCTGTTGCTATGTTAA

Coding sequence (CDS)

ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTATAAGAATGGTGTACATATTTGTTCAGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTCGATCGGATCGGGAGATTGGTAAAGAATGGACTTCTAAACAAGTTAAAAGATGTTTCATTACCTCCATGTGAATCTTGTCTTGAAGGTAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCTAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGACTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTTCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAGAGGAGAAATAGAACCTTGTTAAACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGCTATGGAGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACACGTATTAGTGACAAATCCCAAGAAGTTGGAACCTCGTTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTTGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAGACCACATGAGAAATCATAAACCACGAAGCAAATTAGTATTAAGTGAAGCTACTGATGAATCAACAAGGGTTGTTGATGAAGTTGGTCCCTCATCAAGGGTTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATGCCTCGACGCAGTGGGAGGGTTGTATCACAACCTAACCGCTATTTGGGTTTAACTGAAACTCAAGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTGAAGGGGTAAAACCTATAGGGTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAGACCTTTAAAGCTAGACTTGTGGCAAAAGGGTATACCCAAGGGAAGGGGTTGACTATGAGGAAACTTTCTCTCCTGTTGCTATGTTAA

Protein sequence

MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQGKGLTMRKLSLLLLC

Homology

[Close]

BLAST of Cmc04g0102931 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1129.0 bits (2919), Expect = 0.0e+00
Identity = 555/559 (99.28%), Postives = 558/559 (99.82%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MVRSMMSYAQLP
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VQTFKARLVAKGYTQGKGL 560
           VQTFKARLVAKGYTQ +G+
Sbjct: 773 VQTFKARLVAKGYTQREGV 791

[Close]

BLAST of Cmc04g0102931 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 1117.1 bits (2888), Expect = 0.0e+00
Identity = 549/559 (98.21%), Postives = 555/559 (99.28%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVK+GLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
            RSDRGGEYMDL FQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MVRSMMSYAQLP
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VQTFKARLVAKGYTQGKGL 560
           VQTFKARLVAKGYT+ +G+
Sbjct: 773 VQTFKARLVAKGYTRKEGV 791

[Close]

BLAST of Cmc04g0102931 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 920.2 bits (2377), Expect = 8.5e-264
Identity = 455/485 (93.81%), Postives = 464/485 (95.67%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFI KNGVHICS KLE+NLYVL+PNE KAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKA GGFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MV SMMSY QLP
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLP 504

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSK+V ETPFELWRGRKPSLSHFRIW CP HVLVTNPKKLEP
Sbjct: 505 SSFWGYAVETAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEP 564

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF EEDHMR+HKPR KLVLSEATDEST
Sbjct: 565 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDEST 624

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGR +SQ  RYLGLTET VVIPD GVED
Sbjct: 625 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRGLSQSKRYLGLTETHVVIPDVGVED 684

Query: 481 PLSYK 486
           PL YK
Sbjct: 685 PLFYK 689

[Close]

BLAST of Cmc04g0102931 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 899.8 bits (2324), Expect = 1.2e-257
Identity = 461/540 (85.37%), Postives = 467/540 (86.48%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGTGDVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFI KNG     AKLE+NLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRL HINLDRIGRLVKNGLLNKLKD SLPPCESCLEGKMTKRPFTGK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYKTEVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MVRSMMSYAQLP
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 507

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWG                                                 PKKLEP
Sbjct: 508 SSFWG------------------------------------------------TPKKLEP 567

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKE RGGLFFDPQENRVFVSTN TFLEED MR+HKPRSKLVL EATDEST
Sbjct: 568 RSRLCQFVGYPKERRGGLFFDPQENRVFVSTNTTFLEEDRMRDHKPRSKLVLCEATDEST 627

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEV PSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQP RYLGLTETQVVIPDDGVED
Sbjct: 628 RVVDEVDPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPKRYLGLTETQVVIPDDGVED 687

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQ MNDVDK+QWVKAMDLE+ESMYFNSVWEL DL EGVKPIGCKWIYKRKRDS GK
Sbjct: 688 PLSYKQTMNDVDKNQWVKAMDLEIESMYFNSVWELADLSEGVKPIGCKWIYKRKRDSVGK 694

[Close]

BLAST of Cmc04g0102931 vs. NCBI nr
Match: KAA0065386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 888.6 bits (2295), Expect = 2.8e-254
Identity = 449/541 (82.99%), Postives = 463/541 (85.58%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAK                                        
Sbjct: 151 MTLKVGTGDVISARAVGDAK---------------------------------------- 210

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
                                    PNEAKAVLNHEMFRTANTQNKRQRISPNN TYLWH
Sbjct: 211 -------------------------PNEAKAVLNHEMFRTANTQNKRQRISPNNGTYLWH 270

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVKNGLLNKL+D SLPPCES LEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 271 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFIGKGYRAKEPLELIHS 330

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DL GPMNVKAR GFEYFISFIDDYSRYGYLYLMEHKSEALEK KEY+TEVENLLS+KIKI
Sbjct: 331 DLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKLKEYETEVENLLSEKIKI 390

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSA GTPQQNGVSERRNRTLL+MVRSMMSYAQ P
Sbjct: 391 LRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQNGVSERRNRTLLDMVRSMMSYAQFP 450

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSKSVSE PFELWRGRKPSLSHFRIWGCP H+LVTNPKKLEP
Sbjct: 451 SSFWGYAVETAVHILNNVPSKSVSEPPFELWRGRKPSLSHFRIWGCPVHMLVTNPKKLEP 510

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPK+TRGGLFFDPQENRVFVSTNATFLEEDHMR+HKPRSKLVL+EAT+EST
Sbjct: 511 RSRLCQFVGYPKDTRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVLNEATNEST 570

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQ LRMPR SGR+VS+PNRYLGLTETQVVIPDDGVED
Sbjct: 571 RVVDEVGPSSRVDETTTSGQSHPSQLLRMPRHSGRIVSEPNRYLGLTETQVVIPDDGVED 626

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKR+SAGK
Sbjct: 631 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKPIGCKWIYKRKRNSAGK 626

Query: 541 V 542
           V
Sbjct: 691 V 626

[Close]

BLAST of Cmc04g0102931 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-81
Identity = 192/588 (32.65%), Postives = 306/588 (52.04%), Query Frame = 0


Query: 2   TLKVGTGDVISARAVGDAKLFFG-NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 61
           T+K+G         +GD  +       + L+++  VP ++ NL+S   L    Y   F+ 
Sbjct: 321 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 380

Query: 62  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 121
            +  + K  + I        LY       +  LN            +  IS +    LWH
Sbjct: 381 QKWRLTKGSLVIAKGVARGTLYRTNAEICQGELN----------AAQDEISVD----LWH 440

Query: 122 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 181
            R+GH++   +  L K  L++  K  ++ PC+ CL GK  +  F     R    L+L++S
Sbjct: 441 KRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYS 500

Query: 182 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 241
           D+CGPM +++ GG +YF++FIDD SR  ++Y+++ K +  + F+++   VE    +K+K 
Sbjct: 501 DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 560

Query: 242 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 301
           LRSD GGEY    F++Y   HGI+ + + PGTPQ NGV+ER NRT++  VRSM+  A+LP
Sbjct: 561 LRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 620

Query: 302 SSFWGYAVETAVHILNNVPSKSVS-ETPFELWRGRKPSLSHFRIWGCP--AHVLVTNPKK 361
            SFWG AV+TA +++N  PS  ++ E P  +W  ++ S SH +++GC   AHV      K
Sbjct: 621 KSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTK 680

Query: 362 LEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHM----RNHKPRSKLVLS 421
           L+ +S  C F+GY  E  G   +DP + +V  S +  F E +       + K ++ ++ +
Sbjct: 681 LDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPN 740

Query: 422 EATDESTRVVDEVGPSSRVDETTTSGQ-------------------SHPSQSLRMP---R 481
             T  ST   +     S  DE +  G+                    HP+Q        R
Sbjct: 741 FVTIPSTS-NNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLR 800

Query: 482 RSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNS 541
           RS R   +  RY   +   V+I DD   +P S K+ ++  +K+Q +KAM  EMES+  N 
Sbjct: 801 RSERPRVESRRY--PSTEYVLISDD--REPESLKEVLSHPEKNQLMKAMQEEMESLQKNG 860

Query: 542 VWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQGKGL 560
            ++LV+LP+G +P+ CKW++K K+D   K+  +KARLV KG+ Q KG+
Sbjct: 861 TYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

[Close]

BLAST of Cmc04g0102931 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-53
Identity = 167/641 (26.05%), Postives = 280/641 (43.68%), Query Frame = 0


Query: 30  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNGVHIC-SAKLENNLYVLRPNE 89
           LE++    +   NL+SV  L E   SI F  +   I KNG+ +  ++ + NN+       
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNV------- 404

Query: 90  AKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHIN------LDRIGRLVKNGLLNK 149
              V+N + + + N ++K       NN  LWH R GHI+      + R        LLN 
Sbjct: 405 --PVINFQAY-SINAKHK-------NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNN 464

Query: 150 LKDVSLPPCESCLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGPMNVKARGGFEYFISF 209
           L ++S   CE CL GK  + PF     +   K PL ++HSD+CGP+         YF+ F
Sbjct: 465 L-ELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIF 524

Query: 210 IDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIE 269
           +D ++ Y   YL+++KS+    F+++  + E   + K+  L  D G EY+    + + ++
Sbjct: 525 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVK 584

Query: 270 HGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLPSSFWGYAVETAVHILNNVPS 329
            GI   L+ P TPQ NGVSER  RT+    R+M+S A+L  SFWG AV TA +++N +PS
Sbjct: 585 KGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPS 644

Query: 330 KSV---SETPFELWRGRKPSLSHFRIWGCPAHVLVTNPK-KLEPRSRLCQFVGYPKETRG 389
           +++   S+TP+E+W  +KP L H R++G   +V + N + K + +S    FVGY  E  G
Sbjct: 645 RALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGY--EPNG 704

Query: 390 GLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDE---------STRVVDEVG 449
              +D    +  V+ +    E + + +   + + V  + + E         S +++    
Sbjct: 705 FKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEF 764

Query: 450 P--SSRVDETTTSGQSHPSQSLRMPRRSGRVV--------------------SQPNRYL- 509
           P  S   D       S  S++   P  S +++                     + N+Y  
Sbjct: 765 PNESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESNKYFL 824

Query: 510 ------------------------GLTETQVVIPDDGVEDP------------------- 556
                                     +ET   + + G+++P                   
Sbjct: 825 NESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTK 884

[Close]

BLAST of Cmc04g0102931 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.5e-49
Identity = 178/691 (25.76%), Postives = 293/691 (42.40%), Query Frame = 0


Query: 5    VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEA 64
            +  G  I     G A L   ++ + L  +  VP I +NL+SV  L   +  S+ F    +
Sbjct: 341  IADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEF-FPAS 400

Query: 65   FIYKN---GVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 124
            F  K+   GV +   K ++ LY      ++AV    MF  A+  +K    S       WH
Sbjct: 401  FQVKDLNTGVPLLQGKTKDELYEWPIASSQAV---SMF--ASPCSKATHSS-------WH 460

Query: 125  LRLGHINLDRIGRLVKNGLLNKLK-DVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIH 184
             RLGH +L  +  ++ N  L  L     L  C  C   K  K PF+     + +PLE I+
Sbjct: 461  SRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIY 520

Query: 185  SDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIK 244
            SD+     + +   + Y++ F+D ++RY +LY ++ KS+  + F  +K+ VEN    +I 
Sbjct: 521  SDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIG 580

Query: 245  ILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQL 304
             L SD GGE++ LR  DY+ +HGI    S P TP+ NG+SER++R ++ M  +++S+A +
Sbjct: 581  TLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASV 640

Query: 305  PSSFWGYAVETAVHILNNVPSKSVS-ETPFELWRGRKPSLSHFRIWGCPAHVLVT--NPK 364
            P ++W YA   AV+++N +P+  +  ++PF+   G+ P+    +++GC  +  +   N  
Sbjct: 641  PKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRH 700

Query: 365  KLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE------------------ 424
            KLE +S+ C F+GY       L       R++ S +  F E                   
Sbjct: 701  KLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQR 760

Query: 425  ----DHMRNHK--PRSKLVL------------------SEATDESTRVVDEVGPSSRVDE 484
                 +  +H   P + LVL                  S +   +T+V     PSS +  
Sbjct: 761  SDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISS 820

Query: 485  TTTSGQSHPSQS--------------------LRMPRRSGRVVSQPNRYLGLTETQVVIP 544
             ++S  + PS +                    L  P  +    + PN+   L ++ +  P
Sbjct: 821  PSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSP 880

Query: 545  ----------------------------------------------------DDGVEDP- 560
                                                                 DG+  P 
Sbjct: 881  HIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPN 940

[Close]

BLAST of Cmc04g0102931 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.2e-48
Identity = 168/689 (24.38%), Postives = 269/689 (39.04%), Query Frame = 0


Query: 5    VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINF 64
            V  G  I     G   L   ++ + L N+  VP I +NL+SV  L          +  +F
Sbjct: 362  VADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASF 421

Query: 65   SMNEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYL 124
             + +      GV +   K ++ LY     E     +  +   A+  +K    S       
Sbjct: 422  QVKD---LNTGVPLLQGKTKDELY-----EWPIASSQPVSLFASPSSKATHSS------- 481

Query: 125  WHLRLGHINLDRIGRLVKNGLLNKLK-DVSLPPCESCLEGKMTKRPFTGKGYRAKEPLEL 184
            WH RLGH     +  ++ N  L+ L        C  CL  K  K PF+     +  PLE 
Sbjct: 482  WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 541

Query: 185  IHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKK 244
            I+SD+     + +   + Y++ F+D ++RY +LY ++ KS+  E F  +K  +EN    +
Sbjct: 542  IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 601

Query: 245  IKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYA 304
            I    SD GGE++ L   +Y  +HGI    S P TP+ NG+SER++R ++    +++S+A
Sbjct: 602  IGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 661

Query: 305  QLPSSFWGYAVETAVHILNNVPSKSVS-ETPFELWRGRKPSLSHFRIWGCPAHVLVT--N 364
             +P ++W YA   AV+++N +P+  +  E+PF+   G  P+    R++GC  +  +   N
Sbjct: 662  SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYN 721

Query: 365  PKKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE-----------DHMRN 424
              KL+ +SR C F+GY       L    Q +R+++S +  F E              ++ 
Sbjct: 722  QHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQE 781

Query: 425  HKPRSKLVLSEATDESTR------------------------------------------ 484
             +  S  V S  T   TR                                          
Sbjct: 782  QRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSS 841

Query: 485  ---------VVDEVGPSSRVDETTTSGQSHPS-----------------QSLRMPRRSGR 544
                        + GP      T T  Q+H S                 QSL  P +S  
Sbjct: 842  SFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSS 901

Query: 545  VVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMND------------------------- 560
                P      + T    P   +  P    Q +N+                         
Sbjct: 902  SSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPK 961

[Close]

BLAST of Cmc04g0102931 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-24
Identity = 104/408 (25.49%), Postives = 178/408 (43.63%), Query Frame = 0


Query: 11  ISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNGV 70
           I   A+G+    F N           P I  +L+S+S L     +  F+ N      +G 
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN-TLERSDGT 549

Query: 71  HICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTY-LWHLRLGHINLD 130
            +       + Y L  ++   + +H    T N  NK +  S N   Y L H  LGH N  
Sbjct: 550 VLAPIVKHGDFYWL--SKKYLIPSHISKLTINNVNKSK--SVNKYPYPLIHRMLGHANFR 609

Query: 131 RIGRLVKNGLLNKLKD-------VSLPPCESCLEGKMTKRPFTGKGYRAK-----EPLEL 190
            I + +K   +  LK+        S   C  CL GK TK     KG R K     EP + 
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHV-KGSRLKYQESYEPFQY 669

Query: 191 IHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE--ALEKFKEYKTEVENLLS 250
           +H+D+ GP++   +    YFISF D+ +R+ ++Y +  + E   L  F      ++N  +
Sbjct: 670 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFN 729

Query: 251 KKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMS 310
            ++ +++ DRG EY +     +    GI +  +     + +GV+ER NRTLLN  R+++ 
Sbjct: 730 ARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLH 789

Query: 311 YAQLPSSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNP 370
            + LP+  W  AVE +  I N++ S    ++  +        ++    +G P  V   NP
Sbjct: 790 CSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIVNNHNP 849

Query: 371 -KKLEPRSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMR 403
             K+ PR      +   + + G + + P   +   +TN   L+++  +
Sbjct: 850 DSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQSK 891

[Close]

BLAST of Cmc04g0102931 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 1129.0 bits (2919), Expect = 0.0e+00
Identity = 555/559 (99.28%), Postives = 558/559 (99.82%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MVRSMMSYAQLP
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VQTFKARLVAKGYTQGKGL 560
           VQTFKARLVAKGYTQ +G+
Sbjct: 773 VQTFKARLVAKGYTQREGV 791

[Close]

BLAST of Cmc04g0102931 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 1117.1 bits (2888), Expect = 0.0e+00
Identity = 549/559 (98.21%), Postives = 555/559 (99.28%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVK+GLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
            RSDRGGEYMDL FQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MVRSMMSYAQLP
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK
Sbjct: 713 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 772

Query: 541 VQTFKARLVAKGYTQGKGL 560
           VQTFKARLVAKGYT+ +G+
Sbjct: 773 VQTFKARLVAKGYTRKEGV 791

[Close]

BLAST of Cmc04g0102931 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 920.2 bits (2377), Expect = 4.1e-264
Identity = 455/485 (93.81%), Postives = 464/485 (95.67%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFI KNGVHICS KLE+NLYVL+PNE KAVLNHEMFRTANTQNKRQRIS NNNTYLWH
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLDRIGRLVKNGLLNKL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKA GGFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYKTEVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MV SMMSY QLP
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLP 504

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSK+V ETPFELWRGRKPSLSHFRIW CP HVLVTNPKKLEP
Sbjct: 505 SSFWGYAVETAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEP 564

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF EEDHMR+HKPR KLVLSEATDEST
Sbjct: 565 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDEST 624

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGR +SQ  RYLGLTET VVIPD GVED
Sbjct: 625 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRGLSQSKRYLGLTETHVVIPDVGVED 684

Query: 481 PLSYK 486
           PL YK
Sbjct: 685 PLFYK 689

[Close]

BLAST of Cmc04g0102931 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 899.8 bits (2324), Expect = 5.8e-258
Identity = 461/540 (85.37%), Postives = 467/540 (86.48%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGTGDVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
           NEAFI KNG     AKLE+NLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRL HINLDRIGRLVKNGLLNKLKD SLPPCESCLEGKMTKRPFTGK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYKTEVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLL+MVRSMMSYAQLP
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 507

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWG                                                 PKKLEP
Sbjct: 508 SSFWG------------------------------------------------TPKKLEP 567

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPKE RGGLFFDPQENRVFVSTN TFLEED MR+HKPRSKLVL EATDEST
Sbjct: 568 RSRLCQFVGYPKERRGGLFFDPQENRVFVSTNTTFLEEDRMRDHKPRSKLVLCEATDEST 627

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEV PSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQP RYLGLTETQVVIPDDGVED
Sbjct: 628 RVVDEVDPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPKRYLGLTETQVVIPDDGVED 687

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQ MNDVDK+QWVKAMDLE+ESMYFNSVWEL DL EGVKPIGCKWIYKRKRDS GK
Sbjct: 688 PLSYKQTMNDVDKNQWVKAMDLEIESMYFNSVWELADLSEGVKPIGCKWIYKRKRDSVGK 694

[Close]

BLAST of Cmc04g0102931 vs. ExPASy TrEMBL
Match: A0A5A7VGC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530 PE=4 SV=1)

HSP 1 Score: 888.6 bits (2295), Expect = 1.3e-254
Identity = 449/541 (82.99%), Postives = 463/541 (85.58%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAK                                        
Sbjct: 151 MTLKVGTGDVISARAVGDAK---------------------------------------- 210

Query: 61  NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 120
                                    PNEAKAVLNHEMFRTANTQNKRQRISPNN TYLWH
Sbjct: 211 -------------------------PNEAKAVLNHEMFRTANTQNKRQRISPNNGTYLWH 270

Query: 121 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 180
           LRLGHINLD+IGRLVKNGLLNKL+D SLPPCES LEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 271 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFIGKGYRAKEPLELIHS 330

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 240
           DL GPMNVKAR GFEYFISFIDDYSRYGYLYLMEHKSEALEK KEY+TEVENLLS+KIKI
Sbjct: 331 DLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKLKEYETEVENLLSEKIKI 390

Query: 241 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLNMVRSMMSYAQLP 300
           LRSDRGGEYMDLRFQDYMIEHGIQSQLSA GTPQQNGVSERRNRTLL+MVRSMMSYAQ P
Sbjct: 391 LRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQNGVSERRNRTLLDMVRSMMSYAQFP 450

Query: 301 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVPSKSVSE PFELWRGRKPSLSHFRIWGCP H+LVTNPKKLEP
Sbjct: 451 SSFWGYAVETAVHILNNVPSKSVSEPPFELWRGRKPSLSHFRIWGCPVHMLVTNPKKLEP 510

Query: 361 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 420
           RSRLCQFVGYPK+TRGGLFFDPQENRVFVSTNATFLEEDHMR+HKPRSKLVL+EAT+EST
Sbjct: 511 RSRLCQFVGYPKDTRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVLNEATNEST 570

Query: 421 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 480
           RVVDEVGPSSRVDETTTSGQSHPSQ LRMPR SGR+VS+PNRYLGLTETQVVIPDDGVED
Sbjct: 571 RVVDEVGPSSRVDETTTSGQSHPSQLLRMPRHSGRIVSEPNRYLGLTETQVVIPDDGVED 626

Query: 481 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGK 540
           PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKR+SAGK
Sbjct: 631 PLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKPIGCKWIYKRKRNSAGK 626

Query: 541 V 542
           V
Sbjct: 691 V 626

[Close]

BLAST of Cmc04g0102931 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 77.4 bits (189), Expect = 4.1e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 479 EDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSA 538
           ++P +Y +A   +    W  AMD E+ +M     WE+  LP   KPIGCKW+YK K +S 
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 539 GKVQTFKARLVAKGYTQGKGL 560
           G ++ +KARLVAKGYTQ +G+
Sbjct: 144 GTIERYKARLVAKGYTQQEGI 161

[Close]

BLAST of Cmc04g0102931 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-09
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 283 NRTLLNMVRSMMSYAQLPSSFWGYAVETAVHILNNVPSKSVS-ETPFELWRGRKPSLSHF 342
           NRT++  VRSM+    LP +F   A  TAVHI+N  PS +++   P E+W    P+ S+ 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 343 RIWGCPAHVLVTNPKKLEPRSR 364
           R +GC A++   +  KL+PR++
Sbjct: 62  RRFGCVAYI-HCDEGKLKPRAK 82

[Close]

BLAST of Cmc04g0102931 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-09
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 449 MPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMY 508
           M  RS   +++ N    LT T  +      ++P S   A+ D     W +AM  E++++ 
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTI-----KKEPKSVIFALKD---PGWCQAMQEELDALS 60

Query: 509 FNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQGKGL 560
            N  W LV  P     +GCKW++K K  S G +   KARLVAKG+ Q +G+
Sbjct: 61  RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

[Close]

BLAST of Cmc04g0102931 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 60.1 bits (144), Expect = 6.8e-09
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 114 NNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKE 173
           + T LWH RL H++   +  LVK G L+  K  SL  CE C+ GK  +  F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 174 PLELIHSDLCGPMNV 189
           PL+ +HSDL G  +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc04g0102931 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	0.0e+00	99.28	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	0.0e+00	98.21	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	8.5e-264	93.81	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	1.2e-257	85.37	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0065386.1	2.8e-254	82.99	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0102931 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-81	32.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-53	26.05	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	6.5e-49	25.76	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.2e-48	24.38	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	1.1e-24	25.49	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0102931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	0.0e+00	99.28	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	0.0e+00	98.21	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	4.1e-264	93.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	5.8e-258	85.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7VGC7	1.3e-254	82.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530...	[more]

BLAST of Cmc04g0102931 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.1e-14	45.68	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00710.1	1.0e-09	39.02	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
ATMG00820.1	4.0e-09	34.23	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00300.1	6.8e-09	40.00	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 216..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..454
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..452
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 114..456 coord: 479..563
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 106..159 e-value: 6.3E-13 score: 48.4
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 172..273 e-value: 2.6E-12 score: 46.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 170..335 score: 24.551409
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 167..343 e-value: 1.8E-42 score: 146.9
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 510..559 e-value: 2.4E-12 score: 47.0
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 169..333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0102931.1	Cmc04g0102931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding