Cmc04g0102241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0102241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 18956981 .. 18958186 (-)
RNA-Seq Expression	Cmc04g0102241
Synteny	Cmc04g0102241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTAATTATTCTCTTATGAACACTCTTAGTCCTGCTAACTCTTTACCATCCATTTGTGCTGCTGATAACAATTGTATGAACATCACTCACATTGGCACCAATAATACCCCCAGTTTAAATCTTCCTCATACTTACTGTGTCCCAAACTTAACTTTTAATCTAGTGTCTATTGGTCAACTGTGCGATCTTGGCTTAACTGTCTCTTTTTCTCCCAATGGTTGTTAGATTCAAGATTCGCAGACAGGATAGACGATTGGGACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCCTATCACTTCAGGTTCCTCCTCCTTCATCCATCTCTACTCTTGTCACTGATTCTGATACATATCAGTGGCATCTTTGTCTTGGTCATGCTTCTCTTAAAAAACTGCGTTATTTAATTTCTATTAACAGTTTAAATAATGTTACCAAGTTTGTCCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAATCTGCTTTGTCTTTTTCTCCATCCACTTCTATATGTGATAAACCTTTTGATTTAATCCATTCAGACATATGGGCTCTTGCCCCTACTACCATTGTCCATGGTTTTCGCTATTATGTTTTATTCATTGATGATTTCTCTCGATTCACATGGACATATTTTCTCAAACACCGCTCTGAATTATCTCGCACTTATATTGAGTTTGCTAAAATGATTCACACTCAATTCTCTTGTCCTATCAAAACCCTTTTCACTGACAATGCCTTGGAGTATAAAGACTCTACTCTTCTATCTTTTCTCTCCCAACAGGGCACTCTTGTTCAGCGCTCCTGCCCTCACACTTCTCCACAAAATCGGCGTGCTGAGAGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTACTGCCTCATGCCCTGAGAAATTTTGGGGTAAAGCAGCTCTTACATCCGTCTATACCATCAACAGTTTTCCTTCTTCTATTCTTCAGAACATCTCTCCATTCGAAAGATTATATGGTACTCTTCCCAACTACTCTAACCTTAAAGTCTTTAGTTGTGTGTGCTTTGTTCTCCTGCATCCTCATGAACACACTAAACTTGAACCAAATGCCTGCCTCTGTTGTTTCCTTGGCTATGACACAGAACATAAAGGTTTTCGTTGTTGGGATCTTCTTTCCAATAGACTTTGTATATCTCGCCATGTCACATTTTAG

mRNA sequence

ATGACATCTAATTATTCTCTTATGAACACTCTTAGTCCTGCTAACTCTTTACCATCCATTTGTGCTGCTGATAACAATTGTATGAACATCACTCACATTGGCACCAATAATACCCCCAGTTTAAATCTTCCTCATACTTACTGTACGATTGGGACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCCTATCACTTCAGGTTCCTCCTCCTTCATCCATCTCTACTCTTGTCACTGATTCTGATACATATCAGTGGCATCTTTGTCTTGGTCATGCTTCTCTTAAAAAACTGCGTTATTTAATTTCTATTAACAGTTTAAATAATGTTACCAAGTTTGTCCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAATCTGCTTTGTCTTTTTCTCCATCCACTTCTATATGTGATAAACCTTTTGATTTAATCCATTCAGACATATGGGCTCTTGCCCCTACTACCATTGTCCATGGTTTTCGCTATTATGTTTTATTCATTGATGATTTCTCTCGATTCACATGGACATATTTTCTCAAACACCGCTCTGAATTATCTCGCACTTATATTGAGTTTGCTAAAATGATTCACACTCAATTCTCTTGTCCTATCAAAACCCTTTTCACTGACAATGCCTTGGAGTATAAAGACTCTACTCTTCTATCTTTTCTCTCCCAACAGGGCACTCTTGTTCAGCGCTCCTGCCCTCACACTTCTCCACAAAATCGGCGTGCTGAGAGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTACTGCCTCATGCCCTGAGAAATTTTGGGGTAAAGCAGCTCTTACATCCGTCTATACCATCAACAGTTTTCCTTCTTCTATTCTTCAGAACATCTCTCCATTCGAAAGATTATATGGTACTCTTCCCAACTACTCTAACCTTAAAGTCTTTAGTTGTGTGTGCTTTGTTCTCCTGCATCCTCATGAACACACTAAACTTGAACCAAATGCCTGCCTCTGTTGTTTCCTTGGCTATGACACAGAACATAAAGGTTTTCGTTGTTGGGATCTTCTTTCCAATAGACTTTGTATATCTCGCCATGTCACATTTTAG

Coding sequence (CDS)

ATGACATCTAATTATTCTCTTATGAACACTCTTAGTCCTGCTAACTCTTTACCATCCATTTGTGCTGCTGATAACAATTGTATGAACATCACTCACATTGGCACCAATAATACCCCCAGTTTAAATCTTCCTCATACTTACTGTACGATTGGGACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCCTATCACTTCAGGTTCCTCCTCCTTCATCCATCTCTACTCTTGTCACTGATTCTGATACATATCAGTGGCATCTTTGTCTTGGTCATGCTTCTCTTAAAAAACTGCGTTATTTAATTTCTATTAACAGTTTAAATAATGTTACCAAGTTTGTCCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAATCTGCTTTGTCTTTTTCTCCATCCACTTCTATATGTGATAAACCTTTTGATTTAATCCATTCAGACATATGGGCTCTTGCCCCTACTACCATTGTCCATGGTTTTCGCTATTATGTTTTATTCATTGATGATTTCTCTCGATTCACATGGACATATTTTCTCAAACACCGCTCTGAATTATCTCGCACTTATATTGAGTTTGCTAAAATGATTCACACTCAATTCTCTTGTCCTATCAAAACCCTTTTCACTGACAATGCCTTGGAGTATAAAGACTCTACTCTTCTATCTTTTCTCTCCCAACAGGGCACTCTTGTTCAGCGCTCCTGCCCTCACACTTCTCCACAAAATCGGCGTGCTGAGAGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTACTGCCTCATGCCCTGAGAAATTTTGGGGTAAAGCAGCTCTTACATCCGTCTATACCATCAACAGTTTTCCTTCTTCTATTCTTCAGAACATCTCTCCATTCGAAAGATTATATGGTACTCTTCCCAACTACTCTAACCTTAAAGTCTTTAGTTGTGTGTGCTTTGTTCTCCTGCATCCTCATGAACACACTAAACTTGAACCAAATGCCTGCCTCTGTTGTTTCCTTGGCTATGACACAGAACATAAAGGTTTTCGTTGTTGGGATCTTCTTTCCAATAGACTTTGTATATCTCGCCATGTCACATTTTAG

Protein sequence

MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYCTIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTYQWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDLIHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCPIKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTASCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHEHTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF

Homology

[Close]

BLAST of Cmc04g0102241 vs. NCBI nr
Match: KAA0025466.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 627.5 bits (1617), Expect = 7.3e-176
Identity = 317/401 (79.05%), Postives = 329/401 (82.04%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 267 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 326

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 327 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 386

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 387 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 446

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 447 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 506

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 507 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 566

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 567 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 626

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGYDTEHKGFRCWD LSNRL ISRHVTF
Sbjct: 627 HTKLEPRARLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTF 666

[Close]

BLAST of Cmc04g0102241 vs. NCBI nr
Match: TYK19656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 4.7e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. NCBI nr
Match: TYK26360.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 4.7e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. NCBI nr
Match: KAA0041601.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0065379.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12000.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 4.7e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. NCBI nr
Match: TYK04714.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 4.7e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-53
Identity = 115/315 (36.51%), Postives = 173/315 (54.92%), Query Frame = 0


Query: 53  GRKVGRLFELLSLQVPPPSSISTLVTDSDTYQWHLCLGHASLKKLRYLI---SINSLNNV 112
           G+    L+E       P S  ++  + +    WH  LGH +   L  +I   S++ LN  
Sbjct: 435 GKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPS 494

Query: 113 TKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDLIHSDIWALAPTTIVHGFRYYVLFIDD 172
            KF+  +C +C + K + + FS ST    +P + I+SD+W+ +P      +RYYV+F+D 
Sbjct: 495 HKFL--SCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDH 554

Query: 173 FSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCPIKTLFTDNALEYKDSTLLSFLSQQGT 232
           F+R+TW Y LK +S++  T+I F  ++  +F   I T ++DN  E+    L  + SQ G 
Sbjct: 555 FTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGI 614

Query: 233 LVQRSCPHTSPQNRRAESKHRHILDSVRALLLTASCPEKFWGKAALTSVYTINSFPSSIL 292
               S PHT   N  +E KHRHI+++   LL  AS P+ +W  A   +VY IN  P+ +L
Sbjct: 615 SHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLL 674

Query: 293 QNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHEHTKLEPNACLCCFLGYDTEHKGFRCW 352
           Q  SPF++L+GT PNY  L+VF C C+  L P+   KL+  +  C FLGY      + C 
Sbjct: 675 QLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCL 734

Query: 353 DLLSNRLCISRHVTF 365
            L ++RL ISRHV F
Sbjct: 735 HLQTSRLYISRHVRF 744

[Close]

BLAST of Cmc04g0102241 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-52
Identity = 113/283 (39.93%), Postives = 160/283 (56.54%), Query Frame = 0


Query: 85  WHLCLGHASLKKLRYLISINS---LNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPF 144
           WH  LGH SL  L  +IS +S   LN   K +  +C +C + K   + FS ST    KP 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLL--SCSDCFINKSHKVPFSNSTITSSKPL 505

Query: 145 DLIHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFS 204
           + I+SD+W+ +P   +  +RYYV+F+D F+R+TW Y LK +S++  T+I F  ++  +F 
Sbjct: 506 EYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQ 565

Query: 205 CPIKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLL 264
             I TL++DN  E+    L  +LSQ G     S PHT   N  +E KHRHI++    LL 
Sbjct: 566 TRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLS 625

Query: 265 TASCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHP 324
            AS P+ +W  A   +VY IN  P+ +LQ  SPF++L+G  PNY  LKVF C C+  L P
Sbjct: 626 HASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRP 685

Query: 325 HEHTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           +   KLE  +  C F+GY      + C  + + RL  SRHV F
Sbjct: 686 YNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQF 723

[Close]

BLAST of Cmc04g0102241 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-35
Identity = 89/280 (31.79%), Postives = 136/280 (48.57%), Query Frame = 0


Query: 85  WHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDLI 144
           WH  +GH S K L+ L   + ++         C  C   KQ  +SF  S+       DL+
Sbjct: 425 WHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLV 484

Query: 145 HSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCPI 204
           +SD+        + G +Y+V FIDD SR  W Y LK + ++ + + +F  ++  +    +
Sbjct: 485 YSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKL 544

Query: 205 KTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTAS 264
           K L +DN  EY       + S  G   +++ P T   N  AE  +R I++ VR++L  A 
Sbjct: 545 KRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAK 604

Query: 265 CPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHEH 324
            P+ FWG+A  T+ Y IN  PS  L    P         +YS+LKVF C  F  +   + 
Sbjct: 605 LPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQR 664

Query: 325 TKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           TKL+  +  C F+GY  E  G+R WD +  ++  SR V F
Sbjct: 665 TKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF 704

[Close]

BLAST of Cmc04g0102241 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-27
Identity = 79/287 (27.53%), Postives = 134/287 (46.69%), Query Frame = 0


Query: 85  WHLCLGHASLKKL-----RYLISINSLNNVTKFVPFNCLNCKLAKQSALSFS--PSTSIC 144
           WH   GH S  KL     + + S  SL N  +     C  C   KQ+ L F      +  
Sbjct: 418 WHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHI 477

Query: 145 DKPFDLIHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIH 204
            +P  ++HSD+        +    Y+V+F+D F+ +  TY +K++S++   + +F     
Sbjct: 478 KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSE 537

Query: 205 TQFSCPIKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVR 264
             F+  +  L+ DN  EY  + +  F  ++G     + PHT   N  +E   R I +  R
Sbjct: 538 AHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKAR 597

Query: 265 ALLLTASCPEKFWGKAALTSVYTINSFPSSILQNIS--PFERLYGTLPNYSNLKVFSCVC 324
            ++  A   + FWG+A LT+ Y IN  PS  L + S  P+E  +   P   +L+VF    
Sbjct: 598 TMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATV 657

Query: 325 FVLLHPHEHTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHV 363
           +V +  ++  K +  +    F+GY  E  GF+ WD ++ +  ++R V
Sbjct: 658 YVHI-KNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNEKFIVARDV 701

[Close]

BLAST of Cmc04g0102241 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.5e-06
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 249 HRHILDSVRALLLTASCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNL 308
           +R I++ VR++L     P+ F   AA T+V+ IN +PS+ +    P E  + ++P YS L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 309 KVFSCVCFVLLHPHEHTKLEPNA 332
           + F CV ++     +  KL+P A
Sbjct: 62  RRFGCVAYIHC---DEGKLKPRA 81

[Close]

BLAST of Cmc04g0102241 vs. ExPASy TrEMBL
Match: A0A5A7SI12 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00670 PE=4 SV=1)

HSP 1 Score: 627.5 bits (1617), Expect = 3.5e-176
Identity = 317/401 (79.05%), Postives = 329/401 (82.04%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 267 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 326

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 327 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 386

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 387 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 446

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 447 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 506

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 507 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 566

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 567 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 626

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGYDTEHKGFRCWD LSNRL ISRHVTF
Sbjct: 627 HTKLEPRARLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTF 666

[Close]

BLAST of Cmc04g0102241 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.3e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. ExPASy TrEMBL
Match: A0A5D3D7V8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00480 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.3e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. ExPASy TrEMBL
Match: A0A5D3C0D7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00020 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.3e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. ExPASy TrEMBL
Match: A0A5D3DT06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00190 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.3e-175
Identity = 316/401 (78.80%), Postives = 328/401 (81.80%), Query Frame = 0


Query: 1   MTSNYSLMNTLSPANSLPSICAADNNCMNITHIGTNNTPSLNLPHTYC------------ 60
           MTS+YSLMNT SP  SLP I AAD NCMNITH+GT NTPSLNLPHTYC            
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  -------------------------TIGTGRKVGRLFELLSLQVPPPSSISTLVTDSDTY 120
                                    TIGTGRKVGRLFELLSLQVP P SIS  VTDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSP-SISAPVTDSDTY 449

Query: 121 QWHLCLGHASLKKLRYLISINSLNNVTKFVPFNCLNCKLAKQSALSFSPSTSICDKPFDL 180
           QWHL LGHAS +KLR+LISIN+LN++TKFVPFNCLNCKLAKQ ALSFS STSICDKPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWALAPTTIVHGFRYYVLFIDDFSRFTWTYFLKHRSELSRTYIEFAKMIHTQFSCP 240
           IHSDIW  APT+ VHG+RYYVLFIDDFSRFTW YFLKHRSELSRTYIEFA MI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKTLFTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSPQNRRAESKHRHILDSVRALLLTA 300
           IKTL TDNALEYKDSTLLSFLSQQGTLVQRSCPHTS QN RAE KHRHILDSVRALLL+A
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNLKVFSCVCFVLLHPHE 360
           SCPEKFWG+AALTSVYTIN  PSS+LQNISPFERLYGT PNYSNLKVF C CFVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPNACLCCFLGYDTEHKGFRCWDLLSNRLCISRHVTF 365
           HTKLEP A LCCFLGY TEHKGFRCWD LSNRL ISRHVTF
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTF 729

[Close]

BLAST of Cmc04g0102241 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-07
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 249 HRHILDSVRALLLTASCPEKFWGKAALTSVYTINSFPSSILQNISPFERLYGTLPNYSNL 308
           +R I++ VR++L     P+ F   AA T+V+ IN +PS+ +    P E  + ++P YS L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 309 KVFSCVCFVLLHPHEHTKLEPNA 332
           + F CV ++     +  KL+P A
Sbjct: 62  RRFGCVAYIHC---DEGKLKPRA 81

The following BLAST results are available for this feature:

BLAST of Cmc04g0102241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025466.1	7.3e-176	79.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK19656.1	4.7e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK26360.1	4.7e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0041601.1	4.7e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04714.1	4.7e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc04g0102241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.3e-53	36.51	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.1e-52	39.93	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.2e-35	31.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.6e-27	27.53	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92512	7.5e-06	33.73	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0102241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SI12	3.5e-176	79.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VIT8	2.3e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D7V8	2.3e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C0D7	2.3e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DT06	2.3e-175	78.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc04g0102241 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	5.3e-07	33.73	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 133..312 e-value: 2.3E-31 score: 110.6
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 139..238 e-value: 2.5E-9 score: 37.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 136..302 score: 16.094744
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 69..125 e-value: 1.3E-7 score: 31.4
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 58..342
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 58..342
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 138..311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0102241.1	Cmc04g0102241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding