Cmc04g0101481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0101481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 17855375 .. 17856167 (+)
RNA-Seq Expression	Cmc04g0101481
Synteny	Cmc04g0101481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTATGCATTGACTATCGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATTCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAAGGAGCTACAGTGTTCTCTAACATTGATCTTCGGTCGGGATACCATCAGTTGAGGATAAAGGACGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAACAGTATTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGGACATTTACGTATGGTTCTGCAAACCCTTCGGGATAATATATTGTACGCAAAGTTCTCGAAATGTGAGTTTTGGTTGAAGCAGGTGTCCTCTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTTCACGGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGATGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGTTAGTTACTGCACTGGTTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTACAGTGATGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGTAG

mRNA sequence

ATGCGCCTATGCATTGACTATCGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATTCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAAGGAGCTACAGTGTTCTCTAACATTGATCTTCGGTCGGGATACCATCAGTTGAGGATAAAGGACGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAACAGTATTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGGACATTTACGTATGGTTCTGCAAACCCTTCGGGATAATATATTGTGTCCTCTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTTCACGGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGATGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGTTAGTTACTGCACTGGTTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTACAGTGATGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGTAG

Coding sequence (CDS)

ATGCGCCTATGCATTGACTATCGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATTCCTTGCCCAGGATCGACGATCTGTTTGACCAGTTACAAGGAGCTACAGTGTTCTCTAACATTGATCTTCGGTCGGGATACCATCAGTTGAGGATAAAGGACGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAACAGTATTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGGACATTTACGTATGGTTCTGCAAACCCTTCGGGATAATATATTGTGTCCTCTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTTCACGGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGATGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGTTAGTTACTGCACTGGTTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTACAGTGATGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGTAG

Protein sequence

MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHLRMVLQTLRDNILCPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTVPDGSGSFVIYSDASKKGLGCVLM

Homology

[Close]

BLAST of Cmc04g0101481 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.3e-127
Identity = 236/263 (89.73%), Postives = 237/263 (90.11%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 994  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1053

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 1054 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1113

Query: 121  LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
            LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 1114 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1173

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
            VRSFLGLAGYYRRFVENFSRIA PLTQLTR GAPFVWSKACEDSFQNLKQKLVTALVLTV
Sbjct: 1174 VRSFLGLAGYYRRFVENFSRIAAPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTALVLTV 1233

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 251
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1234 PDGSGSFVIYSDASKKGLGCVLM 1256

[Close]

BLAST of Cmc04g0101481 vs. NCBI nr
Match: KAA0033251.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.9 bits (1195), Expect = 4.3e-127
Identity = 236/263 (89.73%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+ H
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
           LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 567

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 568 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 627

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 251
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 628 PDGSGSFVIYSDASKKGLGCVLM 650

[Close]

BLAST of Cmc04g0101481 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.5 bits (1194), Expect = 5.6e-127
Identity = 236/263 (89.73%), Postives = 237/263 (90.11%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
           LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 251
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLM 453

[Close]

BLAST of Cmc04g0101481 vs. NCBI nr
Match: KAA0047044.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.5 bits (1194), Expect = 5.6e-127
Identity = 236/263 (89.73%), Postives = 236/263 (89.73%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
           LRMVLQTLRDN L                LGHVVSKAGVSVDPAKIE VT W RP TVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTGWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 251
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 241 PDGSGSFVIYSDASKKGLGCVLM 263

[Close]

BLAST of Cmc04g0101481 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.5 bits (1194), Expect = 5.6e-127
Identity = 236/263 (89.73%), Postives = 237/263 (90.11%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 1105 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1164

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 1165 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1224

Query: 121  LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
            LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 1225 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1284

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 1285 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1344

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 251
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1345 PDGSGSFVIYSDASKKGLGCVLM 1367

[Close]

BLAST of Cmc04g0101481 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.3e-49
Identity = 95/262 (36.26%), Postives = 152/262 (58.02%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTAF 61
           R+ IDYR+LN++T+ +RY +P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHL 121
            ++ GHYE++ M FGL NAP  F   MN + R  L+   +V++DDI+I+S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 RMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSEV 181
           ++V   L D  L                LGH+V+  G+  +P K++A+ S+P P    E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSK-ACEDSFQNLKQKLVTALVLTV 241
           R+FLGL GYYR+F+ N++ IA P+T   +        K    ++F+ LK  ++   +L +
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQL 501

Query: 242 PDGSGSFVIYSDASKKGLGCVL 250
           PD    FV+ +DAS   LG VL
Sbjct: 502 PDFEKKFVLTTDASNLALGAVL 523

[Close]

BLAST of Cmc04g0101481 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.6e-47
Identity = 98/262 (37.40%), Postives = 153/262 (58.40%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTAF 61
           R+ IDYR+LN++TV +R+ +P +D++  +L     F+ IDL  G+HQ+ +    V KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHL 121
            +++GHYE++ M FGL NAP  F   MN + R  L+   +V++DDI+++S +  EH   L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 RMVLQTL-RDNILCPL------------LGHVVSKAGVSVDPAKIEAVTSWPRPFTVSEV 181
            +V + L + N+   L            LGHV++  G+  +P KIEA+  +P P    E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDS-FQNLKQKLVTALVLTV 241
           ++FLGL GYYR+F+ NF+ IA P+T+  +       +    DS F+ LK  +    +L V
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKV 502

Query: 242 PDGSGSFVIYSDASKKGLGCVL 250
           PD +  F + +DAS   LG VL
Sbjct: 503 PDFTKKFTLTTDASDVALGAVL 524

[Close]

BLAST of Cmc04g0101481 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.9e-45
Identity = 93/272 (34.19%), Postives = 155/272 (56.99%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTAF 61
           R+ +D++ LN VT+ + Y +P I+     L  A  F+ +DL SG+HQ+ +K+ D+PKTAF
Sbjct: 179 RMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAF 238

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHL 121
            +  G YEF+ + FGL NAP +F  +++ + RE +     V+IDDI+++S+    H  +L
Sbjct: 239 STLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNL 298

Query: 122 RMVLQTL-RDNILCPL------------LGHVVSKAGVSVDPAKIEAVTSWPRPFTVSEV 181
           R+VL +L + N+   L            LG++V+  G+  DP K+ A++  P P +V E+
Sbjct: 299 RLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKEL 358

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTR-----------MGAPFVWSKACEDSFQNLKQ 241
           + FLG+  YYR+F+++++++A PLT LTR              P    +    SF +LK 
Sbjct: 359 KRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKS 418

Query: 242 KLVTALVLTVPDGSGSFVIYSDASKKGLGCVL 250
            L ++ +L  P  +  F + +DAS   +G VL
Sbjct: 419 ILCSSEILAFPCFTKPFHLTTDASNWAIGAVL 450

[Close]

BLAST of Cmc04g0101481 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-43
Identity = 97/273 (35.53%), Postives = 153/273 (56.04%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTAF 61
           RL ID+R+LN+ T+ +RY +P I  +   L  A  F+ +DL+SGYHQ+ + + D  KT+F
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHL 121
               G YEF  + FGL NA ++F   ++ V RE +     V++DD++I+S+ E++H  H+
Sbjct: 298 SVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHI 357

Query: 122 RMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSEV 181
             VL+ L D  +                LG +VSK G   DP K++A+  +P P  V +V
Sbjct: 358 DTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKV 417

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTR-----------MGAPFVWSKACEDSFQNLKQ 241
           RSFLGLA YYR F+++F+ IA P+T + +              P  +++   ++FQ L+ 
Sbjct: 418 RSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRN 477

Query: 242 KLVTA-LVLTVPDGSGSFVIYSDASKKGLGCVL 250
            L +  ++L  PD    F + +DAS  G+G VL
Sbjct: 478 ILASEDVILKYPDFKKPFDLTTDASASGIGAVL 510

[Close]

BLAST of Cmc04g0101481 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-43
Identity = 99/261 (37.93%), Postives = 146/261 (55.94%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTAF 61
           RLC+DYR LNK T+ + + LPRID+L  ++  A +F+ +DL SGYHQ+ ++  D  KTAF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  RSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGHL 121
            +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH  HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 RMVLQTLRDNIL------CPLLGHVVSKAGVSVDPAKI-------EAVTSWPRPFTVSEV 181
             VL+ L++  L      C          G S+   KI        A+  +P P TV + 
Sbjct: 793 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 852

Query: 182 RSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTVP 241
           + FLG+  YYRRF+ N S+IA P+     +     W++  + + + LK  L  + VL   
Sbjct: 853 QRFLGMINYYRRFIPNCSKIAQPIQLF--ICDKSQWTEKQDKAIEKLKAALCNSPVLVPF 912

Query: 242 DGSGSFVIYSDASKKGLGCVL 250
           +   ++ + +DASK G+G VL
Sbjct: 913 NNKANYRLTTDASKDGIGAVL 929

[Close]

BLAST of Cmc04g0101481 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 236/263 (89.73%), Postives = 237/263 (90.11%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 994  MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1053

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 1054 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1113

Query: 121  LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
            LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 1114 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1173

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
            VRSFLGLAGYYRRFVENFSRIA PLTQLTR GAPFVWSKACEDSFQNLKQKLVTALVLTV
Sbjct: 1174 VRSFLGLAGYYRRFVENFSRIAAPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTALVLTV 1233

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 251
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1234 PDGSGSFVIYSDASKKGLGCVLM 1256

[Close]

BLAST of Cmc04g0101481 vs. ExPASy TrEMBL
Match: A0A5A7SUW2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00470 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.1e-127
Identity = 236/263 (89.73%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 388 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 447

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+ H
Sbjct: 448 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEH 507

Query: 121 LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
           LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 508 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 567

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 568 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 627

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 251
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 628 PDGSGSFVIYSDASKKGLGCVLM 650

[Close]

BLAST of Cmc04g0101481 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.7e-127
Identity = 236/263 (89.73%), Postives = 237/263 (90.11%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 191 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 250

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 251 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 310

Query: 121 LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
           LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 311 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 370

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 371 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 430

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 251
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 431 PDGSGSFVIYSDASKKGLGCVLM 453

[Close]

BLAST of Cmc04g0101481 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.7e-127
Identity = 236/263 (89.73%), Postives = 237/263 (90.11%), Query Frame = 0


Query: 1    MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
            MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 1105 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 1164

Query: 61   FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
            FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 1165 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 1224

Query: 121  LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
            LR+VLQTLRDN L                LGHVVSKAGVSVDPAKIEAVT W RP TVSE
Sbjct: 1225 LRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 1284

Query: 181  VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
            VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 1285 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 1344

Query: 241  PDGSGSFVIYSDASKKGLGCVLM 251
            PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 1345 PDGSGSFVIYSDASKKGLGCVLM 1367

[Close]

BLAST of Cmc04g0101481 vs. ExPASy TrEMBL
Match: A0A5A7TVQ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00290 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.7e-127
Identity = 236/263 (89.73%), Postives = 236/263 (89.73%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYSLPRIDDLFDQLQGATVFSNIDLRSGYHQLRIKDGDVPKTA 60
           MRLCIDYRELNKVTVKNRY LPRIDDLFDQLQGATVFS IDLRSGYHQLRIKDGDVPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEGH 120
           FRSRYGHYEFIVMSFGLTNAP VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE H
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNIL-------------CPLLGHVVSKAGVSVDPAKIEAVTSWPRPFTVSE 180
           LRMVLQTLRDN L                LGHVVSKAGVSVDPAKIE VT W RP TVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIETVTGWTRPSTVSE 180

Query: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRMGAPFVWSKACEDSFQNLKQKLVTALVLTV 240
           VRSFLGLAGYYRRFVENFSRIATPLTQLTR GAPFVWSKACEDSFQNLKQKLVTA VLTV
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTV 240

Query: 241 PDGSGSFVIYSDASKKGLGCVLM 251
           PDGSGSFVIYSDASKKGLGCVLM
Sbjct: 241 PDGSGSFVIYSDASKKGLGCVLM 263

[Close]

BLAST of Cmc04g0101481 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 139 HVVSKAGVSVDPAKIEAVTSWPRPFTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRM 198
           H++S  GVS DPAK+EA+  WP P   +E+R FLGL GYYRRFV+N+ +I  PLT+L + 
Sbjct: 37  HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

Query: 199 GAPFVWSKACEDSFQNLKQKLVTALVLTVPDGSGSFV 236
            +   W++    +F+ LK  + T  VL +PD    FV
Sbjct: 97  NS-LKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc04g0101481 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031931.1	3.3e-127	89.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033251.1	4.3e-127	89.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	5.6e-127	89.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047044.1	5.6e-127	89.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047433.1	5.6e-127	89.73	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0101481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	8.3e-49	36.26	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	4.6e-47	37.40	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.9e-45	34.19	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.1e-43	35.53	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q7LHG5	3.1e-43	37.93	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0101481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQU8	1.6e-127	89.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7SUW2	2.1e-127	89.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7SPZ2	2.7e-127	89.73	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE...	[more]
A0A5A7TV57	2.7e-127	89.73	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TVQ2	2.7e-127	89.73	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00290 PE...	[more]

BLAST of Cmc04g0101481 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.9e-19	45.36	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..131 e-value: 2.8E-54 score: 185.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 151..241 e-value: 1.2E-29 score: 104.2
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 204..250 e-value: 4.3E-11 score: 42.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..131 e-value: 1.5E-20 score: 73.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..176 score: 9.83907
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 2.8E-54 score: 185.6
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..249
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..249
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..141 e-value: 2.43434E-66 score: 201.67
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0101481.1	Cmc04g0101481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding