Cmc04g0100911 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0100911
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr04: 17082143 .. 17082889 (-)
RNA-Seq Expression	Cmc04g0100911
Synteny	Cmc04g0100911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGAATATTGTTAAAAAGTTTGGGCTTGATAAATCACAGCAAAATTACCAAAGATAGTAATGGAGAGCCTATTGATAATAAACTTTACATAAGTATGATTGGTAGTTTACTTTGTTTAACAGTCAGTAGACCTGACATTGCCTTTGTTGTAGGAGTATGTGTTAGATTTCAATTTGATCCCCGAGTTTCTCACCTTCCTGTTGTCAAGAGAATTATCAAATATATTCATTGCACTAGTGACTTTGGAGTGTTATATTCATATGATACAAATTCCACTTTAATTGGTTATTGTGATGCAAATTGGGCAGGATGTTCAGAGGATAGGAAAAGTACTTTAGGAGGATGTTTCTTCCTTGTAAATAATTTGGTTTCCTGGCTCAGTAAAAAGTAAAATTGTGTTTTGCTTTCAACGACTGAAGTTGAATATATAGCAGCTGAAAGTGGTTGTACTCAACTGATGTGGATGAAGCAAATACTTCATGAATATGGTATTAAACAGGATACCATGACTCTCTATTGTGATAATATGAGTGCTATTGATATTTTTAAAAATCCAGTTCAACATAGTAGAACCAAACACATTGATATTAGACATCATTTTATCAGAGAACTTATTGAAGGAAAAATTATCGTACTTGAGCATGTTCGATCCTCTTTTCAGCTAGCTGATATTTTTACTAAACCACTTGATATTTCTTTATTTGAACATTTAAGAGCTGGTTTAGGGGTGTGTAGGATTTAA

mRNA sequence

ATGCAAAGAATATTGTTAAAAAGTTTGGGCTTGATAAATCACAGCAAAATTACCAAAGATAGTAATGGAGAGCCTATTGATAATAAACTTTACATAAGTATGATTGGTAGTTTACTTTGTTTAACAGTCAGTAGACCTGACATTGCCTTTGTTGTAGGAGTATGTGTTAGATTTCAATTTGATCCCCGAGTTTCTCACCTTCCTGTTGTCAAGAGAATTATCAAATATATTCATTGCACTAGTGACTTTGGAGTGTTATATTCATATGATACAAATTCCACTTTAATTGGTTATTGTGATGCAAATTGGGCAGGATGTTCAGAGGATAGGAAAAGTACTTTAGGAGGATCTGAAAGTGGTTGTACTCAACTGATGTGGATGAAGCAAATACTTCATGAATATGGTATTAAACAGGATACCATGACTCTCTATTGTGATAATATGAGTGCTATTGATATTTTTAAAAATCCAGTTCAACATAGTAGAACCAAACACATTGATATTAGACATCATTTTATCAGAGAACTTATTGAAGGAAAAATTATCGTACTTGAGCATGTTCGATCCTCTTTTCAGCTAGCTGATATTTTTACTAAACCACTTGATATTTCTTTATTTGAACATTTAAGAGCTGGTTTAGGGGTGTGTAGGATTTAA

Coding sequence (CDS)

ATGCAAAGAATATTGTTAAAAAGTTTGGGCTTGATAAATCACAGCAAAATTACCAAAGATAGTAATGGAGAGCCTATTGATAATAAACTTTACATAAGTATGATTGGTAGTTTACTTTGTTTAACAGTCAGTAGACCTGACATTGCCTTTGTTGTAGGAGTATGTGTTAGATTTCAATTTGATCCCCGAGTTTCTCACCTTCCTGTTGTCAAGAGAATTATCAAATATATTCATTGCACTAGTGACTTTGGAGTGTTATATTCATATGATACAAATTCCACTTTAATTGGTTATTGTGATGCAAATTGGGCAGGATGTTCAGAGGATAGGAAAAGTACTTTAGGAGGATCTGAAAGTGGTTGTACTCAACTGATGTGGATGAAGCAAATACTTCATGAATATGGTATTAAACAGGATACCATGACTCTCTATTGTGATAATATGAGTGCTATTGATATTTTTAAAAATCCAGTTCAACATAGTAGAACCAAACACATTGATATTAGACATCATTTTATCAGAGAACTTATTGAAGGAAAAATTATCGTACTTGAGCATGTTCGATCCTCTTTTCAGCTAGCTGATATTTTTACTAAACCACTTGATATTTCTTTATTTGAACATTTAAGAGCTGGTTTAGGGGTGTGTAGGATTTAA

Protein sequence

MQRILLKSLGLINHSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRIIKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLGGSESGCTQLMWMKQILHEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHIDIRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGVCRI

Homology

[Close]

BLAST of Cmc04g0100911 vs. NCBI nr
Match: TYK21311.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 6.1e-77
Identity = 149/228 (65.35%), Postives = 168/228 (73.68%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H KITKD N   ID+KLY S+I SLL LT SRPDIA+ VG+C +FQ DPR SHL  VKRI
Sbjct: 322 HVKITKDINDTAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRI 381

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLGG----------------- 133
           IKY+H T+DFG+LYSYDT S L+GYCDA+W G ++DR+ST  G                 
Sbjct: 382 IKYVHGTTDFGILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLGIWFSKKQICVSL 441

Query: 134 ---------SESGCTQLMWMKQILHEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHID 193
                    + SGCTQL+WMK +LHEYGI QD MTLYCDNMSAIDI K PVQHS+TKHID
Sbjct: 442 STVEVEYIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHID 501

Query: 194 IRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGV 216
           IRHHFIRELIE KII L+HVRS  QLADIFTKPLD + FEHLRAGLGV
Sbjct: 502 IRHHFIRELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

[Close]

BLAST of Cmc04g0100911 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-76
Identity = 144/234 (61.54%), Postives = 173/234 (73.93%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H K+TKD+  +  D+KLY S++GSLL LT SRP+IA+VVG+C  +Q DPR++HL  VKRI
Sbjct: 50  HVKLTKDTE-DVEDHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRI 109

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLGG----------------- 133
           +KY+H TSDFG++YSYDT   L+GYCDA+WAG ++DRKST GG                 
Sbjct: 110 LKYVHGTSDFGMMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQN 169

Query: 134 -------------SESGCTQLMWMKQILHEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRT 193
                        + SGCTQL+WMK +LHEYG  QDTMTLYCDN SAIDI KNPVQHSRT
Sbjct: 170 CVSLSTTEAEYIAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRT 229

Query: 194 KHIDIRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGVCR 218
           KHIDIRHHFIREL+E K+I L+H+RS+ QL DIFTKPLD S FE+LRAGLGVCR
Sbjct: 230 KHIDIRHHFIRELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

[Close]

BLAST of Cmc04g0100911 vs. NCBI nr
Match: KAA0034956.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-76
Identity = 148/227 (65.20%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H KITKD N   ID+KLY S+I SLL LT SRPDIA+ VG+C +FQ DPR SHL  VKRI
Sbjct: 322 HVKITKDINDTAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRI 381

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLGG----------------- 133
           IKY+H T+DFG+LYSYDT S L+GYCDA+W G ++DR+ST  G                 
Sbjct: 382 IKYVHGTTDFGILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLGIWFSKKQICVSL 441

Query: 134 ---------SESGCTQLMWMKQILHEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHID 193
                    + SGCTQL+WMK +LHEYGI QD MTLYCDNMSAIDI K PVQHS+TKHID
Sbjct: 442 STVEVEYIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHID 501

Query: 194 IRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLG 215
           IRHHFIRELIE KII L+HVRS  QLADIFTKPLD + FEHLRAGLG
Sbjct: 502 IRHHFIRELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLG 548

[Close]

BLAST of Cmc04g0100911 vs. NCBI nr
Match: KAA0042297.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 5.1e-76
Identity = 134/206 (65.05%), Postives = 167/206 (81.07%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H K+TKD+ G  +D+KLY S++GS+L LT +RPDIA+ +G+C R+Q DPR++HL  VKRI
Sbjct: 31  HVKLTKDTEGAKVDHKLYRSIVGSILYLTANRPDIAYAIGICARYQEDPRITHLEAVKRI 90

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG--GSESGCTQLMWMKQIL 133
           +KY+H TSDFG++YSYDT  T++GYCDA+WAG ++D K+      + SGCTQL+WMK +L
Sbjct: 91  LKYVHGTSDFGMMYSYDTTPTIVGYCDADWAGSTDDPKTEAEYIAAGSGCTQLIWMKNML 150

Query: 134 HEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHIDIRHHFIRELIEGKIIVLEHVRSSF 193
            EYG  QDTMTLYCDNMSAIDI KN VQHSRTKHIDIRHHFIREL+E K+I  +H+RS+ 
Sbjct: 151 LEYGFDQDTMTLYCDNMSAIDISKNYVQHSRTKHIDIRHHFIRELVEDKVIKCDHIRSNL 210

Query: 194 QLADIFTKPLDISLFEHLRAGLGVCR 218
           QL DIFTKPLD S FE+L  GLGVCR
Sbjct: 211 QLVDIFTKPLDASSFEYLHVGLGVCR 236

[Close]

BLAST of Cmc04g0100911 vs. NCBI nr
Match: TYJ97126.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 6.7e-76
Identity = 135/206 (65.53%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H K+TKD+ G  +D+KLY S+ GSLL LT SRPDIA+ +G+  R+Q +PR++HL  VKRI
Sbjct: 100 HVKLTKDTKGAKVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRI 159

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG--GSESGCTQLMWMKQIL 133
           +KY+H TSDFG++YSYDT  T++GYCDA+WAG ++D K+      + SGCTQL+WM+ +L
Sbjct: 160 LKYVHGTSDFGMMYSYDTTPTIVGYCDADWAGSADDPKTEAEYMAAGSGCTQLIWMENML 219

Query: 134 HEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHIDIRHHFIRELIEGKIIVLEHVRSSF 193
            EYG  QDTMTLYCDNMSAIDI KNPVQHSRTKHIDIRHHF+REL+E K+I  +H+RS+ 
Sbjct: 220 LEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIKFDHIRSNL 279

Query: 194 QLADIFTKPLDISLFEHLRAGLGVCR 218
           QLADIFTKPLD S FE+L AGLGVCR
Sbjct: 280 QLADIFTKPLDASSFEYLHAGLGVCR 305

[Close]

BLAST of Cmc04g0100911 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-25
Identity = 72/234 (30.77%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 16   KITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRIIK 75
            K++  S  +  D   Y  ++GSL  L  +RPDI++ V    +F   P   HL  +KRI++
Sbjct: 1230 KLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILR 1289

Query: 76   YIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG-------------------- 135
            Y+  T + G+        +L  Y DA+WAG  +D  ST G                    
Sbjct: 1290 YLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGV 1349

Query: 136  ----------GSESGCTQLMWMKQILHEYGIK-QDTMTLYCDNMSAIDIFKNPVQHSRTK 195
                         +  +++ W+  +L E GI+      +YCDN+ A  +  NPV HSR K
Sbjct: 1350 VRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMK 1409

Query: 196  HIDIRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGVCRI 219
            HI I +HFIR  ++   + + HV +  QLAD  TKPL  + F++  + +GV R+
Sbjct: 1410 HIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Cmc04g0100911 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-25
Identity = 75/246 (30.49%), Postives = 127/246 (51.63%), Query Frame = 0


Query: 8    SLGLINHSKITKDSNGEPIDNK------LYISMIGSLL-CLTVSRPDIAFVVGVCVRFQF 67
            S  L  H K++K      ++ K       Y S +GSL+  +  +RPDIA  VGV  RF  
Sbjct: 1082 STPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLE 1141

Query: 68   DPRVSHLPVVKRIIKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG----- 127
            +P   H   VK I++Y+  T+   + +   ++  L GY DA+ AG  ++RKS+ G     
Sbjct: 1142 NPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLFTF 1201

Query: 128  --------------------------GSESGCTQLMWMKQILHEYGIKQDTMTLYCDNMS 187
                                       +E+G  +++W+K+ L E G+ Q    +YCD+ S
Sbjct: 1202 SGGAISWQSKLQKCVALSTTEAEYIAATETG-KEMIWLKRFLQELGLHQKEYVVYCDSQS 1261

Query: 188  AIDIFKNPVQHSRTKHIDIRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHL 216
            AID+ KN + H+RTKHID+R+H+IRE+++ + + +  + ++   AD+ TK +  + FE  
Sbjct: 1262 AIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELC 1321

[Close]

BLAST of Cmc04g0100911 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-24
Identity = 69/234 (29.49%), Postives = 110/234 (47.01%), Query Frame = 0


Query: 16   KITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRIIK 75
            K+T  S  +  D   Y  ++GSL  L  +RPD+++ V    ++   P   H   +KR+++
Sbjct: 1213 KLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLR 1272

Query: 76   YIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG-------------------- 135
            Y+  T D G+        +L  Y DA+WAG ++D  ST G                    
Sbjct: 1273 YLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGV 1332

Query: 136  ----------GSESGCTQLMWMKQILHEYGIK-QDTMTLYCDNMSAIDIFKNPVQHSRTK 195
                         +  ++L W+  +L E GI+      +YCDN+ A  +  NPV HSR K
Sbjct: 1333 VRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMK 1392

Query: 196  HIDIRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGVCRI 219
            HI + +HFIR  ++   + + HV +  QLAD  TKPL    F++    +GV ++
Sbjct: 1393 HIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446

[Close]

BLAST of Cmc04g0100911 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 69/218 (31.65%), Postives = 110/218 (50.46%), Query Frame = 0


Query: 33   SMIGSLLCLTV-SRPDIAFVVGVCVRFQFDPRVSHLPVVKRIIKYIHCTSDFGVLYSYDT 92
            S+IG L+ + + +RPD+   V +  R+           +KR+++Y+  T D  +++  + 
Sbjct: 1183 SLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNL 1242

Query: 93   --NSTLIGYCDANWAGCSEDRKSTLG------------------------GSES------ 152
               + +IGY D++WAG   DRKST G                         +E+      
Sbjct: 1243 AFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALF 1302

Query: 153  -GCTQLMWMKQILHEYGIK-QDTMTLYCDNMSAIDIFKNPVQHSRTKHIDIRHHFIRELI 212
                + +W+K +L    IK ++ + +Y DN   I I  NP  H R KHIDI++HF RE +
Sbjct: 1303 EAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQV 1362

Query: 213  EGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGV 216
            +  +I LE++ +  QLADIFTKPL  + F  LR  LG+
Sbjct: 1363 QNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc04g0100911 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-12
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 28  NKLYISMIGSLLCL-TVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRIIKYIHCTSDFGVL 87
           N  Y+S +G+++ L  V+RPD+A  VGV  +F  DP  +H   +KR+++Y+  T  +G+ 
Sbjct: 3   NVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLE 62

Query: 88  YSYDTNSTLIGYCDANWAGCSEDRKSTLG 116
           ++    + L+GY DA+WAG  E R+ST G
Sbjct: 63  FTRAGTAKLVGYSDADWAGDVESRRSTSG 91

[Close]

BLAST of Cmc04g0100911 vs. ExPASy TrEMBL
Match: A0A5D3DCC3 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.9e-77
Identity = 149/228 (65.35%), Postives = 168/228 (73.68%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H KITKD N   ID+KLY S+I SLL LT SRPDIA+ VG+C +FQ DPR SHL  VKRI
Sbjct: 322 HVKITKDINDTAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRI 381

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLGG----------------- 133
           IKY+H T+DFG+LYSYDT S L+GYCDA+W G ++DR+ST  G                 
Sbjct: 382 IKYVHGTTDFGILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLGIWFSKKQICVSL 441

Query: 134 ---------SESGCTQLMWMKQILHEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHID 193
                    + SGCTQL+WMK +LHEYGI QD MTLYCDNMSAIDI K PVQHS+TKHID
Sbjct: 442 STVEVEYIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHID 501

Query: 194 IRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGV 216
           IRHHFIRELIE KII L+HVRS  QLADIFTKPLD + FEHLRAGLGV
Sbjct: 502 IRHHFIRELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

[Close]

BLAST of Cmc04g0100911 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 8.6e-77
Identity = 144/234 (61.54%), Postives = 173/234 (73.93%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H K+TKD+  +  D+KLY S++GSLL LT SRP+IA+VVG+C  +Q DPR++HL  VKRI
Sbjct: 50  HVKLTKDTE-DVEDHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRI 109

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLGG----------------- 133
           +KY+H TSDFG++YSYDT   L+GYCDA+WAG ++DRKST GG                 
Sbjct: 110 LKYVHGTSDFGMMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQN 169

Query: 134 -------------SESGCTQLMWMKQILHEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRT 193
                        + SGCTQL+WMK +LHEYG  QDTMTLYCDN SAIDI KNPVQHSRT
Sbjct: 170 CVSLSTTEAEYIAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRT 229

Query: 194 KHIDIRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLGVCR 218
           KHIDIRHHFIREL+E K+I L+H+RS+ QL DIFTKPLD S FE+LRAGLGVCR
Sbjct: 230 KHIDIRHHFIRELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

[Close]

BLAST of Cmc04g0100911 vs. ExPASy TrEMBL
Match: A0A5A7SYI8 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold434G00200 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 8.6e-77
Identity = 148/227 (65.20%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H KITKD N   ID+KLY S+I SLL LT SRPDIA+ VG+C +FQ DPR SHL  VKRI
Sbjct: 322 HVKITKDINDTAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRI 381

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLGG----------------- 133
           IKY+H T+DFG+LYSYDT S L+GYCDA+W G ++DR+ST  G                 
Sbjct: 382 IKYVHGTTDFGILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLGIWFSKKQICVSL 441

Query: 134 ---------SESGCTQLMWMKQILHEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHID 193
                    + SGCTQL+WMK +LHEYGI QD MTLYCDNMSAIDI K PVQHS+TKHID
Sbjct: 442 STVEVEYIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHID 501

Query: 194 IRHHFIRELIEGKIIVLEHVRSSFQLADIFTKPLDISLFEHLRAGLG 215
           IRHHFIRELIE KII L+HVRS  QLADIFTKPLD + FEHLRAGLG
Sbjct: 502 IRHHFIRELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLG 548

[Close]

BLAST of Cmc04g0100911 vs. ExPASy TrEMBL
Match: A0A5A7TKS7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00920 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.5e-76
Identity = 134/206 (65.05%), Postives = 167/206 (81.07%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H K+TKD+ G  +D+KLY S++GS+L LT +RPDIA+ +G+C R+Q DPR++HL  VKRI
Sbjct: 31  HVKLTKDTEGAKVDHKLYRSIVGSILYLTANRPDIAYAIGICARYQEDPRITHLEAVKRI 90

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG--GSESGCTQLMWMKQIL 133
           +KY+H TSDFG++YSYDT  T++GYCDA+WAG ++D K+      + SGCTQL+WMK +L
Sbjct: 91  LKYVHGTSDFGMMYSYDTTPTIVGYCDADWAGSTDDPKTEAEYIAAGSGCTQLIWMKNML 150

Query: 134 HEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHIDIRHHFIRELIEGKIIVLEHVRSSF 193
            EYG  QDTMTLYCDNMSAIDI KN VQHSRTKHIDIRHHFIREL+E K+I  +H+RS+ 
Sbjct: 151 LEYGFDQDTMTLYCDNMSAIDISKNYVQHSRTKHIDIRHHFIRELVEDKVIKCDHIRSNL 210

Query: 194 QLADIFTKPLDISLFEHLRAGLGVCR 218
           QL DIFTKPLD S FE+L  GLGVCR
Sbjct: 211 QLVDIFTKPLDASSFEYLHVGLGVCR 236

[Close]

BLAST of Cmc04g0100911 vs. ExPASy TrEMBL
Match: A0A5D3BDQ5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1605G00020 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.3e-76
Identity = 135/206 (65.53%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           H K+TKD+ G  +D+KLY S+ GSLL LT SRPDIA+ +G+  R+Q +PR++HL  VKRI
Sbjct: 100 HVKLTKDTKGAKVDHKLYRSIAGSLLYLTASRPDIAYAIGIRARYQANPRITHLEAVKRI 159

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG--GSESGCTQLMWMKQIL 133
           +KY+H TSDFG++YSYDT  T++GYCDA+WAG ++D K+      + SGCTQL+WM+ +L
Sbjct: 160 LKYVHGTSDFGMMYSYDTTPTIVGYCDADWAGSADDPKTEAEYMAAGSGCTQLIWMENML 219

Query: 134 HEYGIKQDTMTLYCDNMSAIDIFKNPVQHSRTKHIDIRHHFIRELIEGKIIVLEHVRSSF 193
            EYG  QDTMTLYCDNMSAIDI KNPVQHSRTKHIDIRHHF+REL+E K+I  +H+RS+ 
Sbjct: 220 LEYGFDQDTMTLYCDNMSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKVIKFDHIRSNL 279

Query: 194 QLADIFTKPLDISLFEHLRAGLGVCR 218
           QLADIFTKPLD S FE+L AGLGVCR
Sbjct: 280 QLADIFTKPLDASSFEYLHAGLGVCR 305

[Close]

BLAST of Cmc04g0100911 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-17
Identity = 57/186 (30.65%), Postives = 83/186 (44.62%), Query Frame = 0


Query: 21  SNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRIIKYIHCT 80
           S G+ +D K Y  +IG L+ L ++R DI+F V    +F   PR++H   V +I+ YI  T
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGT 427

Query: 81  SDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG------------------------- 140
              G+ YS      L  + DA++  C + R+ST G                         
Sbjct: 428 VGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSA 487

Query: 141 -----GSESGCTQLMWMKQILHEYGIKQDTMT-LYCDNMSAIDIFKNPVQHSRTKHIDIR 176
                       ++MW+ Q   E  +     T L+CDN +AI I  N V H RTKHI+  
Sbjct: 488 EAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 547

[Close]

BLAST of Cmc04g0100911 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 32/114 (28.07%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 14  HSKITKDSNGEPIDNKLYISMIGSLLCLTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRI 73
           +S ++     +P D   + S++G+L  LT++RPDI++ V +  +   +P ++   ++KR+
Sbjct: 86  NSSVSTAKYPDPSD---FRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRV 145

Query: 74  IKYIHCTSDFGVLYSYDTNSTLIGYCDANWAGCSEDRKSTLG-GSESGCTQLMW 127
           ++Y+  T   G+    ++   +  +CD++WAGC+  R+ST G  +  GC  + W
Sbjct: 146 LRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISW 196

[Close]

BLAST of Cmc04g0100911 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-07
Identity = 23/75 (30.67%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 41  LTVSRPDIAFVVGVCVRFQFDPRVSHLPVVKRIIKYIHCTSDFGVLYSYDTNSTLIGYCD 100
           LT++RPD+ F V    +F    R + +  V +++ Y+  T   G+ YS  ++  L  + D
Sbjct: 3   LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62

Query: 101 ANWAGCSEDRKSTLG 116
           ++WA C + R+S  G
Sbjct: 63  SDWASCPDTRRSVTG 77

The following BLAST results are available for this feature:

BLAST of Cmc04g0100911 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21311.1	6.1e-77	65.35	F5J5.1 [Cucumis melo var. makuwa]	[more]
KAA0055610.1	1.8e-76	61.54	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
KAA0034956.1	1.8e-76	65.20	F5J5.1 [Cucumis melo var. makuwa]	[more]
KAA0042297.1	5.1e-76	65.05	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97126.1	6.7e-76	65.53	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0100911 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.5e-25	30.77	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	4.3e-25	30.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.8e-24	29.49	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.4e-23	31.65	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	3.2e-12	39.33	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc04g0100911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DCC3	2.9e-77	65.35	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 S...	[more]
A0A5D3DLL1	8.6e-77	61.54	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5A7SYI8	8.6e-77	65.20	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold434G00200 PE=4 SV...	[more]
A0A5A7TKS7	2.5e-76	65.05	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G...	[more]
A0A5D3BDQ5	3.3e-76	65.53	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1605...	[more]

BLAST of Cmc04g0100911 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-17	30.65	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.2e-11	28.07	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	4.1e-07	30.67	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 121..215
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 121..215
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 96..201 e-value: 3.20293E-50 score: 158.015

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0100911.1	Cmc04g0100911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding