Cmc04g0099281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0099281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr04: 15028365 .. 15029689 (+)
RNA-Seq Expression	Cmc04g0099281
Synteny	Cmc04g0099281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTTGAATATTCTTTTCTTTTTTTAGTAAATTAGAGTCCGTTGGGGACAATTCAATTAAAAGACACATAACATAACACGCAAACGCCAAAAAGAAAAACAGAAGATTTCTATGTATATATATTTTTTTTTCATCTCTTCGTCGTCCAGTTTTTCTCTCATATTTCTCCATCAATTGGTCAGACAGTGATAAATAGTGAGTTTTTTTTTTACTTATTTCCAAGATAGAATTTTTTATATATATTAGTTCTGTTCTACACTCATTTTATTTGTATACTATATGTGTATTATTTGATTTTATATATAATTTAAACTTCTTAATTAAAGTTTTTGTGTTGTTAGGGATATATCATTTATTATTATTTAAAAAAAAAAAGAAAAAAAAAAAAGAACTTTGGATGATGGAGTCTCATATTTTTTTGTGATTTCTTGAGTGGGAAGTCAAGGTTTTTTTTTGAAGGATATAATATTTGATTCGATAAGTTTCCTTACTAAAAGTTCAAATTTGAAGAAAGAAAAATGATAATTTTGTGATTTCTTGAGTGGCAAGTAAACATTAATTTTCTTGATCTTTTTCCAAATAACAACGTCGATCGTCTGAATTAGTGACTTCTTACACATAAAGAGCTTTTCAAACCTTTCATCTTTCTTATTTGCAAAAACCATATTTCAGTGTAATTGTCTCAGATCCATTCATGTTTTTCTTTGTCATTATCATCACATCACACGATGACACGTTTTATCATATACTACTGTTGTCTGTTGCACATTGATGATCTTCAATCTCATCTCAGAACATAATTGGTGTTTAGAATTTTGAGAATATGTATATATGACAATATGTTTATATTTTTAATTACCACTTCGACATTTCCTAAGTTATTAACCTTATTCTTCACTTTGGTTTCTCAGTCCATACTTCAACCATAATTTCATTTCTGCAGCAAACATTATTATATATATATATATATATATATTACTTACCATTATAACTCATCTTCTCCTCTTTTTTTCTTTTCTCTCTGTTGGTTTCGGTTTCAGACGTTTATGTTCCGATCAATGCTGCACCAAGTTACGCTTATGGCGGCGCAACCGCTTGTGTACTTGACGTCTTTGCTGCATTATGGTGGCCTCCTCCCTCGAAGCTTGAACTTGCTGAGTTTAGTCCGACCTGAATTTTTTGATCCCAGTAACCATCTCTTCCATTTTCTTGTTTATTTCATTCGTTGTTTTTGTTAAAATTATTCCACTTTAATTTTGGTTACTTTCATGAGAAAATCAAGAAATTCTTTATGTTGGGTTTAAGTTACAATCTTTCTTCTTTT

mRNA sequence

TGGTTTGAATATTCTTTTCTTTTTTTAGTAAATTAGAGTCCGTTGGGGACAATTCAATTAAAAGACACATAACATAACACGCAAACGCCAAAAAGAAAAACAGAAGATTTCTATGTATATATATTTTTTTTTCATCTCTTCGTCGTCCAGTTTTTCTCTCATATTTCTCCATCAATTGGTCAGACAGTGATAAATAACGTTTATGTTCCGATCAATGCTGCACCAAGTTACGCTTATGGCGGCGCAACCGCTTGTGTACTTGACGTCTTTGCTGCATTATGGTGGCCTCCTCCCTCGAAGCTTGAACTTGCTGAGTTTAGTCCGACCTGAATTTTTTGATCCCAGTAACCATCTCTTCCATTTTCTTGTTTATTTCATTCGTTGTTTTTGTTAAAATTATTCCACTTTAATTTTGGTTACTTTCATGAGAAAATCAAGAAATTCTTTATGTTGGGTTTAAGTTACAATCTTTCTTCTTTT

Coding sequence (CDS)

ATGTTCCGATCAATGCTGCACCAAGTTACGCTTATGGCGGCGCAACCGCTTGTGTACTTGACGTCTTTGCTGCATTATGGTGGCCTCCTCCCTCGAAGCTTGAACTTGCTGAGTTTAGTCCGACCTGAATTTTTTGATCCCAGTAACCATCTCTTCCATTTTCTTGTTTATTTCATTCGTTGTTTTTGTTAA

Protein sequence

MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIRCFC

Homology

[Close]

BLAST of Cmc04g0099281 vs. NCBI nr
Match: KAF9690016.1 (hypothetical protein SADUNF_Sadunf01G0152100 [Salix dunnii])

HSP 1 Score: 70.1 bits (170), Expect = 7.8e-09
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          MFRS++  +  M ++P   +T+LL+Y  LLPR+LNL  LVR EF D  NH+FHFL+ F+R
Sbjct: 7  MFRSLVRLIGAMMSEPTASVTTLLYYSNLLPRNLNLERLVRREFLDEENHMFHFLISFLR 66

Query: 61 CF 63
          CF
Sbjct: 67 CF 68

[Close]

BLAST of Cmc04g0099281 vs. NCBI nr
Match: PON86403.1 (hypothetical protein TorRG33x02_177440 [Trema orientale])

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          M RS++  VT + AQP   +T+LL+Y  LLPR+LNL  LVR EF  P N++FHFLV F+R
Sbjct: 4  MVRSLVRLVTALVAQPAATITTLLYYSDLLPRNLNLERLVRHEFLAPRNYMFHFLVNFLR 63

Query: 61 CF 63
          CF
Sbjct: 64 CF 65

[Close]

BLAST of Cmc04g0099281 vs. NCBI nr
Match: PON34987.1 (hypothetical protein PanWU01x14_339980 [Parasponia andersonii])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          M RS++  VT + AQP   +T+LL+Y  LLPR+LNL  LVR EF  P N++FHFLV F+R
Sbjct: 4  MVRSLVRIVTALVAQPAATITTLLYYSDLLPRNLNLERLVRHEFLAPRNYMFHFLVNFLR 63

Query: 61 CF 63
          CF
Sbjct: 64 CF 65

[Close]

BLAST of Cmc04g0099281 vs. NCBI nr
Match: KAG5229067.1 (regulator of Vps4 activity in the MVB pathway protein [Salix suchowensis])

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          MFRS+L  ++ + +QP   + +LL+Y  LLPR+LNL  LVR EF D  NHLFHFL+  +R
Sbjct: 7  MFRSLLRLISSLVSQPTASVATLLYYSNLLPRNLNLDRLVRREFLDEENHLFHFLISLLR 66

Query: 61 CF 63
          CF
Sbjct: 67 CF 68

[Close]

BLAST of Cmc04g0099281 vs. NCBI nr
Match: RQO85048.1 (hypothetical protein POPTR_001G181701 [Populus trichocarpa] >RQO85049.1 hypothetical protein POPTR_001G181701 [Populus trichocarpa])

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-08
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          MFRS++  ++ + +QP   +T+LL+Y  LLPR+LNL  +VR E  D  NHLFHFL+ F+R
Sbjct: 7  MFRSLVRLISALMSQPTASVTTLLYYSNLLPRNLNLERMVRRELLDEENHLFHFLISFLR 66

Query: 61 C 62
          C
Sbjct: 67 C 67

[Close]

BLAST of Cmc04g0099281 vs. ExPASy TrEMBL
Match: A0A2P5ELH7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_177440 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          M RS++  VT + AQP   +T+LL+Y  LLPR+LNL  LVR EF  P N++FHFLV F+R
Sbjct: 4  MVRSLVRLVTALVAQPAATITTLLYYSDLLPRNLNLERLVRHEFLAPRNYMFHFLVNFLR 63

Query: 61 CF 63
          CF
Sbjct: 64 CF 65

[Close]

BLAST of Cmc04g0099281 vs. ExPASy TrEMBL
Match: A0A2P5AEN0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_339980 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          M RS++  VT + AQP   +T+LL+Y  LLPR+LNL  LVR EF  P N++FHFLV F+R
Sbjct: 4  MVRSLVRIVTALVAQPAATITTLLYYSDLLPRNLNLERLVRHEFLAPRNYMFHFLVNFLR 63

Query: 61 CF 63
          CF
Sbjct: 64 CF 65

[Close]

BLAST of Cmc04g0099281 vs. ExPASy TrEMBL
Match: A0A7N2LMA8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          MFRS++  +T + +QP   +T++L+Y GLLPR+LNL  LVR EF D  N++FHFL+  +R
Sbjct: 7  MFRSIVRLLTSLVSQPAASVTTILYYSGLLPRNLNLERLVRTEFLDRENYMFHFLINMMR 66

Query: 61 CF 63
          CF
Sbjct: 67 CF 68

[Close]

BLAST of Cmc04g0099281 vs. ExPASy TrEMBL
Match: A0A3N7FTH6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G181701 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          MFRS++  ++ + +QP   +T+LL+Y  LLPR+LNL  +VR E  D  NHLFHFL+ F+R
Sbjct: 7  MFRSLVRLISALMSQPTASVTTLLYYSNLLPRNLNLERMVRRELLDEENHLFHFLISFLR 66

Query: 61 C 62
          C
Sbjct: 67 C 67

[Close]

BLAST of Cmc04g0099281 vs. ExPASy TrEMBL
Match: A0A6N2KX30 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS87119 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-08
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  MFRSMLHQVTLMAAQPLVYLTSLLHYGGLLPRSLNLLSLVRPEFFDPSNHLFHFLVYFIR 60
          MFRS+L  ++ + +QP   + +LL++  LLPR+LNL  LVR EF D  NHLFHFL+  +R
Sbjct: 7  MFRSLLRLISSLVSQPTASVATLLYHSNLLPRNLNLDRLVRREFLDEENHLFHFLISLLR 66

Query: 61 CF 63
          CF
Sbjct: 67 CF 68

The following BLAST results are available for this feature:

BLAST of Cmc04g0099281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9690016.1	7.8e-09	53.23	hypothetical protein SADUNF_Sadunf01G0152100 [Salix dunnii]	[more]
PON86403.1	1.0e-08	56.45	hypothetical protein TorRG33x02_177440 [Trema orientale]	[more]
PON34987.1	1.3e-08	56.45	hypothetical protein PanWU01x14_339980 [Parasponia andersonii]	[more]
KAG5229067.1	2.3e-08	53.23	regulator of Vps4 activity in the MVB pathway protein [Salix suchowensis]	[more]
RQO85048.1	5.0e-08	50.82	hypothetical protein POPTR_001G181701 [Populus trichocarpa] >RQO85049.1 hypothet...	[more]

BLAST of Cmc04g0099281 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0099281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5ELH7	4.9e-09	56.45	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_177440 PE=4 SV...	[more]
A0A2P5AEN0	6.4e-09	56.45	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_339980 PE...	[more]
A0A7N2LMA8	1.4e-08	51.61	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A3N7FTH6	2.4e-08	50.82	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G181701 PE=4 ...	[more]
A0A6N2KX30	4.2e-08	51.61	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS87119 PE=4 SV=1	[more]

BLAST of Cmc04g0099281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37900	FAMILY NOT NAMED	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0099281.1	Cmc04g0099281.1	mRNA