Cmc04g0098071 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0098071
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
LocationCMiso1.1chr04: 13344315 .. 13344746 (-)
RNA-Seq ExpressionCmc04g0098071
SyntenyCmc04g0098071
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATCTTTGTGCTATTCCTAAAGGGCATACAACAATTGGGTGCAATTGGTTGTTCCCTCTAAAGTATAAATCAAATGGAACCCTAGACAAGTACAAGGCTAGACTTGTAGTGGAAGGGTTTACTCAAACTTATGGGATAGATTATTCTGAGACATACTCCTCTGTAGAAAAGTTAAGCACAGTCAAGGGCTTTCTTTCTGTTGCAGTTAATAAAGACTGGCCTATCCATCAGCTTGATGTGAAAAATGCATTTCTGAATGGTGAATTAGAAGAAGTTTATATGGCAGTGGCAAGATCAAAGGAACGAATCTCTATCTCACAACGGAAATACACCATTGACCTATTAAAAGAAACAAGTATGACGGGATATAGACCTGCTAACACTCCTATTGAATTCAATGTGAAACTGGAAGATTCTGTTGATTAA

mRNA sequence

ATGTGGGATCTTTGTGCTATTCCTAAAGGGCATACAACAATTGGGTGCAATTGGTTGTTCCCTCTAAAGTATAAATCAAATGGAACCCTAGACAAGTACAAGGCTAGACTTGTAGTGGAAGGGTTTACTCAAACTTATGGGATAGATTATTCTGAGACATACTCCTCTGTAGAAAAGTTAAGCACAGTCAAGGGCTTTCTTTCTGTTGCAGTTAATAAAGACTGGCCTATCCATCAGCTTGATGTGAAAAATGCATTTCTGAATGGTGAATTAGAAGAAGTTTATATGGCAGTGGCAAGATCAAAGGAACGAATCTCTATCTCACAACGGAAATACACCATTGACCTATTAAAAGAAACAAGTATGACGGGATATAGACCTGCTAACACTCCTATTGAATTCAATGTGAAACTGGAAGATTCTGTTGATTAA

Coding sequence (CDS)

ATGTGGGATCTTTGTGCTATTCCTAAAGGGCATACAACAATTGGGTGCAATTGGTTGTTCCCTCTAAAGTATAAATCAAATGGAACCCTAGACAAGTACAAGGCTAGACTTGTAGTGGAAGGGTTTACTCAAACTTATGGGATAGATTATTCTGAGACATACTCCTCTGTAGAAAAGTTAAGCACAGTCAAGGGCTTTCTTTCTGTTGCAGTTAATAAAGACTGGCCTATCCATCAGCTTGATGTGAAAAATGCATTTCTGAATGGTGAATTAGAAGAAGTTTATATGGCAGTGGCAAGATCAAAGGAACGAATCTCTATCTCACAACGGAAATACACCATTGACCTATTAAAAGAAACAAGTATGACGGGATATAGACCTGCTAACACTCCTATTGAATTCAATGTGAAACTGGAAGATTCTGTTGATTAA

Protein sequence

MWDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLSTVKGFLSVAVNKDWPIHQLDVKNAFLNGELEEVYMAVARSKERISISQRKYTIDLLKETSMTGYRPANTPIEFNVKLEDSVD
Homology
BLAST of Cmc04g0098071 vs. NCBI nr
Match: KAA0043254.1 (DNA polymerase theta [Cucumis melo var. makuwa] >TYK29318.1 DNA polymerase theta [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 4.8e-46
Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = 0

Query: 3   DLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLST 62
           ++CA+PKGH  +GC W+F LKYK++GTLD++KARLV +GFTQTY +DYSET+S V KL+T
Sbjct: 361 EICALPKGHNPVGCKWVFTLKYKADGTLDRHKARLVAKGFTQTYDVDYSETFSPVAKLNT 420

Query: 63  VKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA------------VARSKERISISQ 122
           V+  LSVAVNKDW + QLDVKNAFLN +L E+VYM+            VARSKE IS+SQ
Sbjct: 421 VEVLLSVAVNKDWSLCQLDVKNAFLNRDLIEKVYMSHPSGFEAQFGQQVARSKEGISVSQ 480

Query: 123 RKYTIDLLKETSMTGYRPANTPIEFNVKLEDSVD 144
           RKYT+DLL ET M G RP +TPIEFN KL +S D
Sbjct: 481 RKYTLDLLTETGMLGCRPTDTPIEFNCKLGNSDD 514

BLAST of Cmc04g0098071 vs. NCBI nr
Match: KAA0042053.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 4.8e-46
Identity = 105/208 (50.48%), Postives = 126/208 (60.58%), Query Frame = 0

Query: 2   WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
           W++CA+PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S V KL+
Sbjct: 619 WEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAKLN 678

Query: 62  TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
           TV+  LSVAVNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 679 TVRVLLSVAVNKDWPLYQLDVKNAFLNGDLMEEVYMSPPPGFEAQFGQQASKTGKIAILI 738

Query: 122 ------------------------------------------VARSKERISISQRKYTID 144
                                                     VARSKE IS+SQRKYT+D
Sbjct: 739 VYVDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRKYTLD 798

BLAST of Cmc04g0098071 vs. NCBI nr
Match: KAA0042054.1 (myosin-9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-43
Identity = 104/219 (47.49%), Postives = 125/219 (57.08%), Query Frame = 0

Query: 2    WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
            W++CA+PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S V KL+
Sbjct: 959  WEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAKLN 1018

Query: 62   TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
            TV+  LSVAVNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 1019 TVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPRQDLKPNLVSSQGHSDHTLFTK 1078

Query: 122  -----------------------------------------------------VARSKER 144
                                                                 VARSKE 
Sbjct: 1079 ASKTGKIAILIVYVDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEG 1138

BLAST of Cmc04g0098071 vs. NCBI nr
Match: TYK17997.1 (myosin-9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-43
Identity = 104/219 (47.49%), Postives = 125/219 (57.08%), Query Frame = 0

Query: 2    WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
            W++CA+PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S V KL+
Sbjct: 1025 WEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAKLN 1084

Query: 62   TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
            TV+  LSVAVNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 1085 TVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPRQDLKPNLVSSQGHSDHTLFTK 1144

Query: 122  -----------------------------------------------------VARSKER 144
                                                                 VARSKE 
Sbjct: 1145 ASKTGKIAILIVYVDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEG 1204

BLAST of Cmc04g0098071 vs. NCBI nr
Match: KAA0039144.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 3.8e-43
Identity = 102/224 (45.54%), Postives = 124/224 (55.36%), Query Frame = 0

Query: 2    WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
            W++C +PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S + KL+
Sbjct: 786  WEICVLPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPIAKLN 845

Query: 62   TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
            TV+  LSV VNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 846  TVRVLLSVVVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQFGQHSQGYSQGHSDH 905

Query: 122  ----------------------------------------------------------VA 144
                                                                      VA
Sbjct: 906  TLFPKASKTGKKAILIVYVDDIVLTGDDQTEISLLKQRMGDEFEIIDLENLKYFLGMEVA 965

BLAST of Cmc04g0098071 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.9e-24
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 0

Query: 2    WDLCAIPKGHTTI-GCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKL 61
            WDL   P  H TI GC W+F  KY S+G+L++YKARLV +G+ Q  G+DY+ET+S V K 
Sbjct: 985  WDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKS 1044

Query: 62   STVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA 98
            ++++  L VAV++ WPI QLDV NAFL G L ++VYM+
Sbjct: 1045 TSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMS 1082

BLAST of Cmc04g0098071 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 0

Query: 2    WDLCAIPKGHTTI-GCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKL 61
            WDL   P    TI GC W+F  K+ S+G+L++YKARLV +G+ Q  G+DY+ET+S V K 
Sbjct: 968  WDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKS 1027

Query: 62   STVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA 98
            ++++  L VAV++ WPI QLDV NAFL G L +EVYM+
Sbjct: 1028 TSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMS 1065

BLAST of Cmc04g0098071 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 0

Query: 2   WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
           + L  +PKG   + C W+F LK   +  L +YKARLVV+GF Q  GID+ E +S V K++
Sbjct: 843 YKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMT 902

Query: 62  TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMAVARSKERISISQRKYTIDLLKET 121
           +++  LS+A + D  + QLDVK AFL+G+L EE+YM      E   ++ +K+ +  L + 
Sbjct: 903 SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM---EQPEGFEVAGKKHMVCKLNK- 962

Query: 122 SMTGYRPA 129
           S+ G + A
Sbjct: 963 SLYGLKQA 966

BLAST of Cmc04g0098071 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-18
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 2    WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
            W +   P+    +   W+F +KY   G   +YKARLV  GFTQ Y IDY ET++ V ++S
Sbjct: 923  WTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARIS 982

Query: 62   TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYM 97
            + +  LS+ +  +  +HQ+DVK AFLNG L EE+YM
Sbjct: 983  SFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYM 1018

BLAST of Cmc04g0098071 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-11
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 2   WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
           W L   P     +GC W+F  K  S+GTLD+ KARLV +GF Q  GI + ETYS V + +
Sbjct: 57  WILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTA 116

Query: 62  TVKGFLSVA 71
           T++  L+VA
Sbjct: 117 TIRTILNVA 125

BLAST of Cmc04g0098071 vs. ExPASy TrEMBL
Match: A0A5A7TIW0 (DNA polymerase theta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00250 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.3e-46
Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = 0

Query: 3   DLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLST 62
           ++CA+PKGH  +GC W+F LKYK++GTLD++KARLV +GFTQTY +DYSET+S V KL+T
Sbjct: 361 EICALPKGHNPVGCKWVFTLKYKADGTLDRHKARLVAKGFTQTYDVDYSETFSPVAKLNT 420

Query: 63  VKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA------------VARSKERISISQ 122
           V+  LSVAVNKDW + QLDVKNAFLN +L E+VYM+            VARSKE IS+SQ
Sbjct: 421 VEVLLSVAVNKDWSLCQLDVKNAFLNRDLIEKVYMSHPSGFEAQFGQQVARSKEGISVSQ 480

Query: 123 RKYTIDLLKETSMTGYRPANTPIEFNVKLEDSVD 144
           RKYT+DLL ET M G RP +TPIEFN KL +S D
Sbjct: 481 RKYTLDLLTETGMLGCRPTDTPIEFNCKLGNSDD 514

BLAST of Cmc04g0098071 vs. ExPASy TrEMBL
Match: A0A5A7TFR5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005100 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.3e-46
Identity = 105/208 (50.48%), Postives = 126/208 (60.58%), Query Frame = 0

Query: 2   WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
           W++CA+PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S V KL+
Sbjct: 619 WEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAKLN 678

Query: 62  TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
           TV+  LSVAVNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 679 TVRVLLSVAVNKDWPLYQLDVKNAFLNGDLMEEVYMSPPPGFEAQFGQQASKTGKIAILI 738

Query: 122 ------------------------------------------VARSKERISISQRKYTID 144
                                                     VARSKE IS+SQRKYT+D
Sbjct: 739 VYVDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRKYTLD 798

BLAST of Cmc04g0098071 vs. ExPASy TrEMBL
Match: A0A5D3D271 (Myosin-9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003060 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 104/219 (47.49%), Postives = 125/219 (57.08%), Query Frame = 0

Query: 2    WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
            W++CA+PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S V KL+
Sbjct: 1025 WEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAKLN 1084

Query: 62   TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
            TV+  LSVAVNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 1085 TVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPRQDLKPNLVSSQGHSDHTLFTK 1144

Query: 122  -----------------------------------------------------VARSKER 144
                                                                 VARSKE 
Sbjct: 1145 ASKTGKIAILIVYVDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEG 1204

BLAST of Cmc04g0098071 vs. ExPASy TrEMBL
Match: A0A5A7TF39 (Myosin-9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005120 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 104/219 (47.49%), Postives = 125/219 (57.08%), Query Frame = 0

Query: 2    WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
            W++CA+PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S V KL+
Sbjct: 959  WEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPVAKLN 1018

Query: 62   TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
            TV+  LSVAVNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 1019 TVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPRQDLKPNLVSSQGHSDHTLFTK 1078

Query: 122  -----------------------------------------------------VARSKER 144
                                                                 VARSKE 
Sbjct: 1079 ASKTGKIAILIVYVDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEG 1138

BLAST of Cmc04g0098071 vs. ExPASy TrEMBL
Match: A0A5A7T6N2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00400 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.8e-43
Identity = 102/224 (45.54%), Postives = 124/224 (55.36%), Query Frame = 0

Query: 2    WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
            W++C +PKGH T+GC W+F LKYK++GTLD++KARLV +GFTQTYGIDYSET+S + KL+
Sbjct: 786  WEICVLPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTYGIDYSETFSPIAKLN 845

Query: 62   TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYMA----------------------- 121
            TV+  LSV VNKDWP++QLDVKNAFLNG+L EEVYM+                       
Sbjct: 846  TVRVLLSVVVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQFGQHSQGYSQGHSDH 905

Query: 122  ----------------------------------------------------------VA 144
                                                                      VA
Sbjct: 906  TLFPKASKTGKKAILIVYVDDIVLTGDDQTEISLLKQRMGDEFEIIDLENLKYFLGMEVA 965

BLAST of Cmc04g0098071 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-26
Identity = 48/96 (50.00%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 2   WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
           W++C +P     IGC W++ +KY S+GT+++YKARLV +G+TQ  GID+ ET+S V KL+
Sbjct: 115 WEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLT 174

Query: 62  TVKGFLSVAVNKDWPIHQLDVKNAFLNGEL-EEVYM 97
           +VK  L+++   ++ +HQLD+ NAFLNG+L EE+YM
Sbjct: 175 SVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYM 210


HSP 2 Score: 43.1 bits (100), Expect = 2.2e-04
Identity = 39/133 (29.32%), Postives = 62/133 (46.62%), Query Frame = 0

Query: 19  LFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLSTVKGFLSVAV------- 78
           ++ LK  S     K+   L+  GF Q++      TY       T   FL V V       
Sbjct: 236 IYGLKQASRQWFLKFSVTLIGFGFVQSHS---DHTYF---LKITATLFLCVLVYVDDIII 295

Query: 79  --NKDWPIHQL--DVKNAFLNGELEEVY----MAVARSKERISISQRKYTIDLLKETSMT 137
             N D  + +L   +K+ F   +L  +     + +ARS   I+I QRKY +DLL ET + 
Sbjct: 296 CSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLL 355

BLAST of Cmc04g0098071 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 2   WDLCAIPKGHTTIGCNWLFPLKYKSNGTLDKYKARLVVEGFTQTYGIDYSETYSSVEKLS 61
           W L   P     +GC W+F  K  S+GTLD+ KARLV +GF Q  GI + ETYS V + +
Sbjct: 57  WILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTA 116

Query: 62  TVKGFLSVA 71
           T++  L+VA
Sbjct: 117 TIRTILNVA 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043254.14.8e-4662.99DNA polymerase theta [Cucumis melo var. makuwa] >TYK29318.1 DNA polymerase theta... [more]
KAA0042053.14.8e-4650.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0042054.12.2e-4347.49myosin-9 isoform X2 [Cucumis melo var. makuwa][more]
TYK17997.12.2e-4347.49myosin-9 isoform X2 [Cucumis melo var. makuwa][more]
KAA0039144.13.8e-4345.54Beta-galactosidase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q94HW26.9e-2453.06Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.7e-2252.04Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109781.1e-1839.84Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041464.4e-1843.75Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925204.0e-1146.38Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7TIW02.3e-4662.99DNA polymerase theta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129... [more]
A0A5A7TFR52.3e-4650.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3D2711.1e-4347.49Myosin-9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G... [more]
A0A5A7TF391.1e-4347.49Myosin-9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G0... [more]
A0A5A7T6N21.8e-4345.54Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G0... [more]
Match NameE-valueIdentityDescription
AT4G23160.19.9e-2650.00cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.12.8e-1246.38Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..96
e-value: 1.2E-26
score: 93.8
NoneNo IPR availablePANTHERPTHR11439:SF322CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKEcoord: 22..93
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 22..93
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 6..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0098071.1Cmc04g0098071.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding