Cmc04g0097921 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0097921
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr04: 13168807 .. 13169199 (+)
RNA-Seq Expression	Cmc04g0097921
Synteny	Cmc04g0097921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACCAGTTGAAGAGATGTTGATCTCTGAAGTAATTCGACCAAGAAAAAGTCCTTTCTCAAGTCCTGTTCTTCTGGTTAAAAAGAAGGATGAAAGTTGGCGTTTCTGTGTCAATTACCGAGTGATCAATAGTGCTACTATACCCGATAAGTTTCCGATACCGGTTGTGGAAGAGTTGTTCGATGAGCTAAATGATGCCACCTTATTTTTAAAGATTGACTTGAAGTCTGACTACCATCAAATAAGAATGGCAGAAGAAGATATTCAAAAAACGGCTTTTAGAACTCATGAAGGTCACTACGAGTTCCTTGTAATGTCGTTTGGATTAACAAATGTGCCAACCACCTTTCAAGCATTTGATGAATACCATTTTCAAACCTTATCTTAG

mRNA sequence

ATGGAAAAACCAGTTGAAGAGATGTTGATCTCTGAAGTAATTCGACCAAGAAAAAGTCCTTTCTCAAGTCCTGTTCTTCTGGTTAAAAAGAAGGATGAAAGTTGGCGTTTCTGTGTCAATTACCGAGTGATCAATAGTGCTACTATACCCGATAAGTTTCCGATACCGGTTGTGGAAGAGTTGTTCGATGAGCTAAATGATGCCACCTTATTTTTAAAGATTGACTTGAAGTCTGACTACCATCAAATAAGAATGGCAGAAGAAGATATTCAAAAAACGGCTTTTAGAACTCATGAAGGTCACTACGAGTTCCTTGTAATGTCGTTTGGATTAACAAATGTGCCAACCACCTTTCAAGCATTTGATGAATACCATTTTCAAACCTTATCTTAG

Coding sequence (CDS)

ATGGAAAAACCAGTTGAAGAGATGTTGATCTCTGAAGTAATTCGACCAAGAAAAAGTCCTTTCTCAAGTCCTGTTCTTCTGGTTAAAAAGAAGGATGAAAGTTGGCGTTTCTGTGTCAATTACCGAGTGATCAATAGTGCTACTATACCCGATAAGTTTCCGATACCGGTTGTGGAAGAGTTGTTCGATGAGCTAAATGATGCCACCTTATTTTTAAAGATTGACTTGAAGTCTGACTACCATCAAATAAGAATGGCAGAAGAAGATATTCAAAAAACGGCTTTTAGAACTCATGAAGGTCACTACGAGTTCCTTGTAATGTCGTTTGGATTAACAAATGTGCCAACCACCTTTCAAGCATTTGATGAATACCATTTTCAAACCTTATCTTAG

Protein sequence

MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQAFDEYHFQTLS

Homology

[Close]

BLAST of Cmc04g0097921 vs. NCBI nr
Match: TYK03261.1 (peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-50
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+
Sbjct: 286 MEKLVKEMLNSGVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRVVNNATILDKFPIPVVEK 345

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 346 LFDELCGATLFSKIDLKSRYHQIRMADEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 405

Query: 121 FDEYHFQTL 130
           FDEY+ Q +
Sbjct: 406 FDEYYLQAI 414

[Close]

BLAST of Cmc04g0097921 vs. NCBI nr
Match: KAA0046886.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-50
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+
Sbjct: 286 MEKLVKEMLNSGVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRVVNNATILDKFPIPVVEK 345

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 346 LFDELCGATLFSKIDLKSRYHQIRMADEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 405

Query: 121 FDEYHFQTL 130
           FDEY+ Q +
Sbjct: 406 FDEYYLQAI 414

[Close]

BLAST of Cmc04g0097921 vs. NCBI nr
Match: KAA0033505.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK26821.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 2.4e-49
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK VEEML S VIRP KSP+S+PVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEE
Sbjct: 253 MEKLVEEMLTSGVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 312

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDELN ATLF KIDLKS YHQIRM E+DI KTAFRTHEGHYEFLVM FGLTNVP TFQA
Sbjct: 313 LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPDTFQA 372

[Close]

BLAST of Cmc04g0097921 vs. NCBI nr
Match: KAA0063978.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 7.1e-49
Identity = 100/120 (83.33%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEE
Sbjct: 625 MEKLVQEMLDSEVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 684

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 685 LFDELCGATLFSKIDLKSGYHQIRMADEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 744

[Close]

BLAST of Cmc04g0097921 vs. NCBI nr
Match: TYK05163.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 7.1e-49
Identity = 100/120 (83.33%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEE
Sbjct: 625 MEKLVQEMLDSEVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 684

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 685 LFDELCGATLFSKIDLKSGYHQIRMADEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 744

[Close]

BLAST of Cmc04g0097921 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-27
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           + K V+++L ++ I P KSP SSPV+LV KKD ++R CV+YR +N ATI D FP+P ++ 
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 671

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           L   + +A +F  +DL S YHQI M  +D  KTAF T  G YE+ VM FGL N P+TF  
Sbjct: 672 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 731

Query: 121 FDEYHFQTL 130
           +    F+ L
Sbjct: 732 YMADTFRDL 740

[Close]

BLAST of Cmc04g0097921 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-27
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           + K V+++L ++ I P KSP SSPV+LV KKD ++R CV+YR +N ATI D FP+P ++ 
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 697

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           L   + +A +F  +DL S YHQI M  +D  KTAF T  G YE+ VM FGL N P+TF  
Sbjct: 698 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 757

Query: 121 FDEYHFQTL 130
           +    F+ L
Sbjct: 758 YMADTFRDL 766

[Close]

BLAST of Cmc04g0097921 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDES-----WRFCVNYRVINSATIPDKFPI 60
           +E  V+EML   +IR   SP++SP  +V KK ++     +R  ++YR +N  TIPD++PI
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 61  PVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVP 120
           P ++E+  +L     F  IDL   +HQI M EE I KTAF T  GHYE+L M FGL N P
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

[Close]

BLAST of Cmc04g0097921 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-23
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKK-----DESWRFCVNYRVINSATIPDKFPI 60
           +E+ ++E+L   +IRP  SP++SP+ +V KK     ++ +R  V+++ +N+ TIPD +PI
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPI 198

Query: 61  PVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVP 120
           P +      L +A  F  +DL S +HQI M E DI KTAF T  G YEFL + FGL N P
Sbjct: 199 PDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258

[Close]

BLAST of Cmc04g0097921 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-22
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDES-----WRFCVNYRVINSATIPDKFPI 60
           +E  +++ML   +IR   SP++SP+ +V KK ++     +R  ++YR +N  T+ D+ PI
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 61  PVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVP 120
           P ++E+  +L     F  IDL   +HQI M  E + KTAF T  GHYE+L M FGL N P
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342

[Close]

BLAST of Cmc04g0097921 vs. ExPASy TrEMBL
Match: A0A5A7TY34 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00450 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+
Sbjct: 286 MEKLVKEMLNSGVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRVVNNATILDKFPIPVVEK 345

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 346 LFDELCGATLFSKIDLKSRYHQIRMADEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 405

Query: 121 FDEYHFQTL 130
           FDEY+ Q +
Sbjct: 406 FDEYYLQAI 414

[Close]

BLAST of Cmc04g0097921 vs. ExPASy TrEMBL
Match: A0A5D3BU55 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00820 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 102/129 (79.07%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+
Sbjct: 286 MEKLVKEMLNSGVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRVVNNATILDKFPIPVVEK 345

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 346 LFDELCGATLFSKIDLKSRYHQIRMADEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 405

Query: 121 FDEYHFQTL 130
           FDEY+ Q +
Sbjct: 406 FDEYYLQAI 414

[Close]

BLAST of Cmc04g0097921 vs. ExPASy TrEMBL
Match: A0A5D3DST3 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00090 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK VEEML S VIRP KSP+S+PVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEE
Sbjct: 253 MEKLVEEMLTSGVIRPSKSPYSNPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 312

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDELN ATLF KIDLKS YHQIRM E+DI KTAFRTHEGHYEFLVM FGLTNVP TFQA
Sbjct: 313 LFDELNGATLFSKIDLKSGYHQIRMEEKDIPKTAFRTHEGHYEFLVMPFGLTNVPDTFQA 372

[Close]

BLAST of Cmc04g0097921 vs. ExPASy TrEMBL
Match: A0A5D3BZJ8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00230 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 100/120 (83.33%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEE
Sbjct: 625 MEKLVQEMLDSEVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 684

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 685 LFDELCGATLFSKIDLKSGYHQIRMADEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 744

[Close]

BLAST of Cmc04g0097921 vs. ExPASy TrEMBL
Match: A0A5A7V8N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001370 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 100/120 (83.33%), Postives = 107/120 (89.17%), Query Frame = 0


Query: 1   MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEE 60
           MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEE
Sbjct: 625 MEKLVQEMLDSEVIRPSTSPYSSPVLLVKKKDGSWRFCVDYRAVNNATIPDKFPIPVVEE 684

Query: 61  LFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFGLTNVPTTFQA 120
           LFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEGHYEFLVM FGLTN P TFQA
Sbjct: 685 LFDELCGATLFSKIDLKSGYHQIRMADEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQA 744

The following BLAST results are available for this feature:

BLAST of Cmc04g0097921 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03261.1	2.9e-50	79.07	peroxidase 64 [Cucumis melo var. makuwa]	[more]
KAA0046886.1	2.9e-50	79.07	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0033505.1	2.4e-49	84.17	peroxidase 64 [Cucumis melo var. makuwa] >TYK26821.1 peroxidase 64 [Cucumis melo...	[more]
KAA0063978.1	7.1e-49	83.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05163.1	7.1e-49	83.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0097921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.7e-27	47.29	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.7e-27	47.29	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P20825	1.3e-24	45.97	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	4.1e-23	42.74	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	2.0e-22	41.13	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc04g0097921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY34	1.4e-50	79.07	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BU55	1.4e-50	79.07	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00820 ...	[more]
A0A5D3DST3	1.2e-49	84.17	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00090 ...	[more]
A0A5D3BZJ8	3.5e-49	83.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V8N7	3.5e-49	83.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc04g0097921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..113 e-value: 1.1E-48 score: 167.4
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..122
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..122
None	No IPR available	CDD	cd01647	RT_LTR	coord: 13..121 e-value: 5.09282E-51 score: 157.757
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 53..127 e-value: 1.1E-48 score: 167.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 28..123 e-value: 1.1E-10 score: 41.4
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0097921.1	Cmc04g0097921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity