Cmc04g0097351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0097351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	CMiso1.1chr04: 12401449 .. 12406702 (-)
RNA-Seq Expression	Cmc04g0097351
Synteny	Cmc04g0097351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAACCACTCAACAAAAACCCACTATCAACCCATTACTCCAAAATCAAATTGAAGTGATTTTAGAATTTTCAAAAATCAATTTTACTTCGTTTCAACCAACATTAATATAAAAATCATTTTGACAGATAAAAAAAGATTTGACTATGATGATCTCAAAATCACTCCCTAACACGTAACCACGAAAAAGGTATGCAGCAGCAATTTCCTTTAAACTATTTCCTTGTCTTCTTCATCCTTCGTTTATGGTGGCGACAAATTCTGGGTATCGTGGCGGCATCGACACCATCCCTCGAAATTTGCTTCCATTAACAAACTGTGAAACTACCTCACAATGTCAATTATCAGTTTCTTGAGTCCTCAATCATGGCGGTTTCCCTTTCCACTCTCATCATTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTACTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGGTTCTTCTCTTACAATGGAACAACAATGGCTGATGATTTTAATGCTGTTATAAGTTATACAATAAGGACTTGACATTTGGTTTGATTTTTGTAGTTTCGGTTGATTTTCTTTTGCTCATGAGATTGTGAGATTGTGAGATTGTGGAAATTAGGAGGGTCGTGCCTGGCTTCTTATATAAATTTTGCATTTGTGTATTTCAGATCGAGTTTTTAAGTTGGTGACTTCTTCGAATTCTCTTTCTCCTATACGTTATGAATTATGATCACAACTTCGTTTGTTGGCACAAATCTGTAGATAATTAAGATGTTTGGTTTGATCAACGCATAAAGGTCCCAAATTCAGCCGGAAGGAACTGTTTGTGAACTAGTTAAACTAAAAATGGAACCACTACATTAAGAAATGCATTGGAAATTTGAATCTTCAATTAGGAGATTAACTTGTCCTAGTCTTCTTTCTGGTTACCAACAGCCGTATTTATAACTTACAACCCCAATTGACAATCATTTAGTTTTTTCATTCAAGTATTTTGGAAAGGTGTTCTCGTTTTTCCTTTACAATTGTCCTAGTCTATTAGTTTTCATCTTTTTTCAAAGTAACATTTCAAGCCTTAGCCAAATTTCAAAACAAAAATTACTTTTTTTTTTCCAAAACTTGTTGTGCATAACGAAACAAAGAAACTCGCCAGTGGAAATAGTGTTTATAAACTAAAATAGTGTTTATAAACTAAAATTTCAAAAAACTGAAAACCAAAGACCTACCCCATTTGATCACAATTTCGTTTTTAGTTTTCTTTGAAATTTATGTTTGTCTTCTCTCAGATTCTTTTATCATGATTTTCACCCTTTTAGATAATCATTTAAATTCTTAGAGAGTTTCAAAAACAAAAGAAATGGGGTTTCAGAAACTACTTTTTCCAATTTTCAAAACTTGACTAGGTTTTTGAAAACATTTATAGAAAGCAAAGAAAAAAGAAAAGAAAAGTTGGGAATAGTGTTTAAAGACTTGAATTTCAAAAACCAAATGGTTATCAAATAGAGCTGCCATTTTTTTGTTGTGTTTGTTTTTTTTGAGGGAGTTGAGACTTGAGTGAGTCTGGTGGTGTTCTAACTTAGTGTCTCGTTTTCCGTTACACTTGTTATTCAACCTGAAATATGGCGTGTTCTAACTGTATATGGTTCTTTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTAAGTAATGATAATTAACATCCAAATTCACAATTATTCCCTTTTTCCTTCCCTCATGTAATTTGCCTTTTCTTGTGAGCAATAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTAAGTTGTCCTTATTAAACTTCGAAAAATTTAAATTGATGAAGTAAAATGGTTGCCTTTCTAGTCCTTAAACTGGTAATAACTTTTTGGTTTCAATACTGCTTCGAGCCCAAACATTCCGCTTTAGTTCATTTTGGTGGTTGTACTTTTAAAATGTTCATTTAGTCCTTGTAGTTTTAACTAGTGACCATTTTGATCTTTTTGTTCAAATGTTATCATAATAAAACCATCAAGTACAAATATATGACTGCTGACTAAACCATCATGGACTAGTCTAGTAGTAAAAAAGGAGACATAGTTTCAATAACTAACTAAGAGGTCATGGGTTCAATTTATGGTGGCCACATATCTAGGAATTAATTTTCCTTGAGATTAGTTGAGGTGCGTGTAAGCTGGCTCAAACATTAACGAATATCATAGAATATATATATATGTGTGTGAGAAATTTAGTGAATGAATTGTTAAAAAGTGAAATGAAAATGAAGGGACCAAAATAGTTTTCTTATATAAGTATAGAGATCAACATGGATATTTTAAAAGTTCATGCACCAAAAGGAAAGAAAGTTGAAAGTACATGGATCGCAAAAGAACCAAAATTGGGAGTGCAGGAGCAAAGTAGTATTTAAGCCTAAACTTTTTCTTGTCTAATCTTCTAATGCAATAGATTGTTTCATTTCATTATTCAGCTGTCATAAGAAAAGGAAATAAACTTTTTTTCCAACTAATTCACCATACATAGGTAGTGGTTGATATATTTTTTTTTTTTTCATTTTTCTTGCCATCCGTAGCCTAGTTATGTTCATGTTTGTTCTTGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGAAGAAAAACACCCCCTCTTCTTTCGAGTGAGTACACGTCTTGAATCAATTTAGATATTCCATTAATTATTTAACTCAATTTTCATGGATACGAAATTCTTAATAATTTAGCAAGAAAGGTTATAACTTAATTCCTTCTAAAGTAGAGAAAAATAGAGGAAAATAAGAGATGAAAAACCAATCATATTTTTCTATCCATTTGATTCTACCATTTCTATTTAATATTATGTTATTCCTTGCAATGAAGGTAGTGGTGTACACATGAAAAACTATACAGTAATCGTCATAATCTTAATAAAAGATCTGAATTTGCAGTTTTAATTGAAGTTTAGAGTTCCAAGTAATACAAATAACGTCTCCAAACGTCTCCAAAGTTTAGAGCTTTTTTCCGTCTCTATTTATTTGAGACTATTTGACGTGCTTTTTGTGGTTGCAAATCTTCCATTCTAATGATTGAGATGAACTTCAAATCTCATTGTGATCTACTTTTGAGCTGCCATCAAACGTCCCATATCTAATTCAAGTCCTATTTGTTTCAACTTTCAATGAACTACACAATCTCTCATCATATATATATTTTTATATATGTAGACAGAATCCACTTTTTAATAAATAAGGTCAACAATGTTGTCACTTCAGTAATTTTAGTTTTTTTTTTCCTTCGTATGCTAACTTAATGTCAAACTATACGGCAGAATCATAATTATGTAATTCATTGCGGTCTTACATAGTATCAATTTTGTTTGTTGTTTTCTATTTTTAAAATTTATGCTGCATACAATTTTCTTGTCATGGTTTTGACGTTTTATGAAAAAAATACTTGAGTTCATAGTCAAAATTTAAAATCTTTTATTTTTTAAAATTTACCTCGATTTCTGAAAATATTAATATAACGAAGATAACAAAACATAGAAATTTATGGGTGGAACTTGGAAGTAGTGTTTTTAAAACCTTTATTTTAAAAAACCAAATACTAATGCCCATTTTATAATCATTTAGTTTTTGTTAGGAATACAAAACATGTAAATACTACTTTCACCCATAAGTTTTTATGTTTTGTTATCTACCTATCACTAGTATTCTAAAAAACAAAGTCAAATTTTAAAAGCTAAAATTATAGTTTTTATAATTTGATTAAGAATTCAAGTATTTCTTTAACGGAGGTGAAAACTATAATCGAAAAATTGGGAAGAAACAAACAGACAACTAAAATATGGGTTGTTATGTTAGTTATATACATGATCATATTAATCTAATCTTTGTTTTCAACCTTATTCTTAAACAGGTACTCTGAAATTGAGTCCTTACCATGGAGTGGACTAAACTTTGGTTATCATCTTTAAACTATCAAAGATACTTCCACTTGGAAAGCTCTAACACCATTGTTAAGCTGGACTGCCTGAGAAATACAGGTTTTTGTAGAGTTAAAAGGAGAGATTTTGCTTATCCATTCATAAATCTTATATTTTTATTGTCTAGATTCCAACATTATTAGTTATTAGTTATTTTTGCTCCAGCAATCTGATTGTATGGGTGCAATTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTATACATGGAGCGTGATGTAAATAACCATGCGTTTCTTTGTTTCTCTTTGGTCCTGTTTGGGAACATTAACTAAGCTAAAAGTTAGCAGTAATGGGTTATTTTAGCTCATCTTACATCTTTGGTACTAATTATAATAATGGTCTATAGAATTGTACTATTTCAAATCTTTGGTTTCAACTGTATTTATTATTTTGTTACTGTATTCACTA

mRNA sequence

TCAACCACTCAACAAAAACCCACTATCAACCCATTACTCCAAAATCAAATTGAAGTGATTTTAGAATTTTCAAAAATCAATTTTACTTCGTTTCAACCAACATTAATATAAAAATCATTTTGACAGATAAAAAAAGATTTGACTATGATGATCTCAAAATCACTCCCTAACACGTAACCACGAAAAAGGTATGCAGCAGCAATTTCCTTTAAACTATTTCCTTGTCTTCTTCATCCTTCGTTTATGGTGGCGACAAATTCTGGGTATCGTGGCGGCATCGACACCATCCCTCGAAATTTGCTTCCATTAACAAACTGTGAAACTACCTCACAATGTCAATTATCAGTTTCTTGAGTCCTCAATCATGGCGGTTTCCCTTTCCACTCTCATCATTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTACTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGAAGAAAAACACCCCCTCTTCTTTCGAGTACTCTGAAATTGAGTCCTTACCATGGAGTGGACTAAACTTTGGTTATCATCTTTAAACTATCAAAGATACTTCCACTTGGAAAGCTCTAACACCATTGTTAAGCTGGACTGCCTGAGAAATACAGGTTTTTGTAGAGTTAAAAGGAGAGATTTTGCTTATCCATTCATAAATCTTATATTTTTATTGTCTAGATTCCAACATTATTAGTTATTAGTTATTTTTGCTCCAGCAATCTGATTGTATGGGTGCAATTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTATACATGGAGCGTGATGTAAATAACCATGCGTTTCTTTGTTTCTCTTTGGTCCTGTTTGGGAACATTAACTAAGCTAAAAGTTAGCAGTAATGGGTTATTTTAGCTCATCTTACATCTTTGGTACTAATTATAATAATGGTCTATAGAATTGTACTATTTCAAATCTTTGGTTTCAACTGTATTTATTATTTTGTTACTGTATTCACTA

Coding sequence (CDS)

ATGGCGGTTTCCCTTTCCACTCTCATCATTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTACTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGA

Protein sequence

MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Homology

[Close]

BLAST of Cmc04g0097351 vs. NCBI nr
Match: XP_008447350.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA0037902.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa] >TYJ98034.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa])

HSP 1 Score: 664.8 bits (1714), Expect = 3.8e-187
Identity = 336/338 (99.41%), Postives = 337/338 (99.70%), Query Frame = 0


Query: 1   MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSL 60
           MAVSLSTLI+SSFNNIAPPPHFSPTPSHNAPDFKFCRRS FHVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Cmc04g0097351 vs. NCBI nr
Match: XP_004152010.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hypothetical protein Csa_017553 [Cucumis sativus])

HSP 1 Score: 627.5 bits (1617), Expect = 6.8e-176
Identity = 319/338 (94.38%), Postives = 328/338 (97.04%), Query Frame = 0


Query: 1   MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSL 60
           MAVSL T  ISSFNNIAPPPHFSPTPSHNA DFKF RRSY  VHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
           KLRVDQNKVIPIS LRGIARLVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Cmc04g0097351 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 577.0 bits (1486), Expect = 1.1e-160
Identity = 301/338 (89.05%), Postives = 312/338 (92.31%), Query Frame = 0


Query: 1   MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSL 60
           MAVSLST  ISS NNI  PPHFS T      DFKF RR   HVHRKT+SF+SSP LP SL
Sbjct: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
               Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKD+T+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

[Close]

BLAST of Cmc04g0097351 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 551.2 bits (1419), Expect = 6.2e-153
Identity = 280/334 (83.83%), Postives = 301/334 (90.12%), Query Frame = 0


Query: 5   LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHV 64
           +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  
Sbjct: 47  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQ 106

Query: 65  YGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 124
           Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL
Sbjct: 107 YRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 166

Query: 125 GALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 184
            ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
Sbjct: 167 AALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 226

Query: 185 DQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNF 244
           DQNKVI ISTLRGIARLVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNF
Sbjct: 227 DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNF 286

Query: 245 EFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 304
           EFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Sbjct: 287 EFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRG 346

Query: 305 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 347 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Cmc04g0097351 vs. NCBI nr
Match: XP_023554665.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554666.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 549.7 bits (1415), Expect = 1.8e-152
Identity = 279/334 (83.53%), Postives = 300/334 (89.82%), Query Frame = 0


Query: 5   LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHV 64
           +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  
Sbjct: 47  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLQ 106

Query: 65  YGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 124
           Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL
Sbjct: 107 YRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 166

Query: 125 GALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 184
            ALANSSRA+EVPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRV
Sbjct: 167 AALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKLRV 226

Query: 185 DQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNF 244
           DQNKVI ISTLRGIARLVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNF
Sbjct: 227 DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNF 286

Query: 245 EFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 304
           EFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Sbjct: 287 EFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRG 346

Query: 305 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 347 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Cmc04g0097351 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.8e-31
Identity = 84/265 (31.70%), Postives = 132/265 (49.81%), Query Frame = 0


Query: 88  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDF 147
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 148 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 207
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 208 ESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEF 267
           +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 268 DEREEVKDITSKRKK--LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 327
           D R +     SK K    ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 328 SGVGYPPWNALVAQLPPVKGLWSGL 330
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

[Close]

BLAST of Cmc04g0097351 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 1.9e-187
Identity = 336/338 (99.41%), Postives = 337/338 (99.70%), Query Frame = 0


Query: 1   MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSL 60
           MAVSLSTLI+SSFNNIAPPPHFSPTPSHNAPDFKFCRRS FHVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Cmc04g0097351 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 1.9e-187
Identity = 336/338 (99.41%), Postives = 337/338 (99.70%), Query Frame = 0


Query: 1   MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSL 60
           MAVSLSTLI+SSFNNIAPPPHFSPTPSHNAPDFKFCRRS FHVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Cmc04g0097351 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 627.5 bits (1617), Expect = 3.3e-176
Identity = 319/338 (94.38%), Postives = 328/338 (97.04%), Query Frame = 0


Query: 1   MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSL 60
           MAVSL T  ISSFNNIAPPPHFSPTPSHNA DFKF RRSY  VHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
           KLRVDQNKVIPIS LRGIARLVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Cmc04g0097351 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 3.0e-153
Identity = 280/334 (83.83%), Postives = 301/334 (90.12%), Query Frame = 0


Query: 5   LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHV 64
           +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  
Sbjct: 47  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQ 106

Query: 65  YGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 124
           Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL
Sbjct: 107 YRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 166

Query: 125 GALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 184
            ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
Sbjct: 167 AALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 226

Query: 185 DQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNF 244
           DQNKVI ISTLRGIARLVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNF
Sbjct: 227 DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNF 286

Query: 245 EFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 304
           EFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Sbjct: 287 EFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRG 346

Query: 305 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 347 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Cmc04g0097351 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 9.6e-152
Identity = 277/334 (82.93%), Postives = 299/334 (89.52%), Query Frame = 0


Query: 5   LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHV 64
           +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  
Sbjct: 3   VSMAIIPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQ 62

Query: 65  YGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 124
           Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL
Sbjct: 63  YRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 122

Query: 125 GALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 184
            ALAN+SRA+EVPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRV
Sbjct: 123 AALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKLRV 182

Query: 185 DQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNF 244
           DQNKVI ISTLRGIARLVICAGPES ++EAFK+SEPFTE+LLERGVLV+P ATD ++LNF
Sbjct: 183 DQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPFTERLLERGVLVIPFATDASSLNF 242

Query: 245 EFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 304
           EFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Sbjct: 243 EFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRG 302

Query: 305 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 339
           SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 303 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of Cmc04g0097351 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 368.2 bits (944), Expect = 6.9e-102
Identity = 195/321 (60.75%), Postives = 244/321 (76.01%), Query Frame = 0


Query: 21  HFSPTPSHNAPDFKFCRRSYFHVHRKTVSFS-SSPRLPVSLRFHVYGRRNLANYIYSAAD 80
           H S    + A +    RR   H HR+ + FS  + RL ++ +          N +  AAD
Sbjct: 31  HISKQALYQAKESYSHRRISRHNHRERLDFSHRNHRLTITRKQQPLS----FNTVCFAAD 90

Query: 81  KP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPD 140
           +P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+LGGLIAT++L+GALAN +R+ EV +
Sbjct: 91  EPSEISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLE 150

Query: 141 ILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRG 200
           I+KGLG+D GA +LFAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ NKVI +  LRG
Sbjct: 151 IVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRG 210

Query: 201 IARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEV-KDIT 260
           +ARLVICAGP  F+ EAFK S+ +T+ L+ERGV+VV  ATD  +   EFDE +   ++++
Sbjct: 211 VARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMS 270

Query: 261 SKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALV 320
            +RKKLWR+TPV++ EW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A V
Sbjct: 271 QRRKKLWRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFV 330

Query: 321 AQLPPVKGLWSGLLDGMDGRV 338
           AQLPPVKG+W+GLLDGMDGRV
Sbjct: 331 AQLPPVKGMWTGLLDGMDGRV 347

[Close]

BLAST of Cmc04g0097351 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-32
Identity = 84/265 (31.70%), Postives = 132/265 (49.81%), Query Frame = 0


Query: 88  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDF 147
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 148 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 207
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 208 ESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEF 267
           +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 268 DEREEVKDITSKRKK--LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 327
           D R +     SK K    ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 328 SGVGYPPWNALVAQLPPVKGLWSGL 330
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

The following BLAST results are available for this feature:

BLAST of Cmc04g0097351 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447350.1	3.8e-187	99.41	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA003...	[more]
XP_004152010.1	6.8e-176	94.38	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hyp...	[more]
XP_038888898.1	1.1e-160	89.05	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]
XP_022963501.1	6.2e-153	83.83	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350...	[more]
XP_023554665.1	1.8e-152	83.53	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]

BLAST of Cmc04g0097351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	4.8e-31	31.70	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cmc04g0097351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BG35	1.9e-187	99.41	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BHU5	1.9e-187	99.41	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0L902	3.3e-176	94.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A6J1HGA1	3.0e-153	83.83	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HWD0	9.6e-152	82.93	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Cmc04g0097351 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	6.9e-102	60.75	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	3.4e-32	31.70	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 84..161 e-value: 1.6E-26 score: 92.3
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 43..336
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 43..336

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0097351.1	Cmc04g0097351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane