Cmc04g0096981 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0096981
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Aluminum-activated malate transporter 9
Location	CMiso1.1chr04: 11644182 .. 11645454 (-)
RNA-Seq Expression	Cmc04g0096981
Synteny	Cmc04g0096981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAATAAAATTAAATTAATATTTTATTAATTTAATTTTGGATCTATTTGATGTTTCTTTAAAGGTTCAATTGGCTAAACTTTTTAAGATCTAAATCTTGGATTTTTCCCAATCAAGGTTGAATTGGTTTCAACCCCAATTTTTAGAAAGTTAATTAATTTGGGAGGATTTTTGGATGTTAGCCAATTGCTAATTTCATTAATTAAGATACTAAGTTTTTCTTTTATGATTAGGATCAAGTTAATTGGAGAATTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAAGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTTAAGAGACTGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAACCTGATGCTACTGATAATGACTGTCATTGTATTGATGTTGATGATGATGACTGAGATTATTATGTTGATGATTGATGATGGTGACTGATGTTATGTTAATGACTGATAGATTGATGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATACTCATGCCATGTTATGATGTTATGTTATGCTACATGCTATGGATAAGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCATTCGGGATCACCACCTATTTAGGACTGTGTGGTTCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCTCGGGTTCACTACGGACCAGCATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTTTCGTTCCTACGAGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTTCTGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGACCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCATTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTCCTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGTCGGTATTGAAAATTTCGGTCTGGCTCCCTCGAAAGAAATCTATTAGTCTTCCTCTTTTT

mRNA sequence

CCAATAAAATTAAATTAATATTTTATTAATTTAATTTTGGATCTATTTGATGTTTCTTTAAAGGTTCAATTGGCTAAACTTTTTAAGATCTAAATCTTGGATTTTTCCCAATCAAGGTTGAATTGGTTTCAACCCCAATTTTTAGAAAGTTAATTAATTTGGGAGGATTTTTGGATGTTAGCCAATTGCTAATTTCATTAATTAAGATACTAAGTTTTTCTTTTATGATTAGGATCAAGTTAATTGGAGAATTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAAGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGACCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCATTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTCCTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGTCGGTATTGAAAATTTCGGTCTGGCTCCCTCGAAAGAAATCTATTAGTCTTCCTCTTTTT

Coding sequence (CDS)

ATGATTAGGATCAAGTTAATTGGAGAATTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAAGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGACCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCATTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTCCTTTTAGTAACGACCTCAGCTTAG

Protein sequence

MIRIKLIGEFYCQLGSTFVWLKSPSEGKGRGKLASDKEGSVTCHMGTSFASAFMFQCFNIPFLMKIYSSLVSKSVSCHCFLLVTTSA

Homology

[Close]

BLAST of Cmc04g0096981 vs. NCBI nr
Match: KAA0031891.1 (hypothetical protein E6C27_scaffold218G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 24 PSEGKGRGKLASDKEGSVTCHMGTSFASAFMFQCFNIPFLM 65
          P EGKGRGKLASD+EGSVTCHMGT F     F+ +++P+L+
Sbjct: 23 PGEGKGRGKLASDREGSVTCHMGTQFC----FRVYDVPYLL 59

[Close]

BLAST of Cmc04g0096981 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 16 STFVWLKSPSEGKGRGKLASDKEGSVTCHMGTSF 50
          S  V +  P EGKGRGKLASDKEGSVTCHMGT F
Sbjct: 15 SLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQF 48

[Close]

BLAST of Cmc04g0096981 vs. NCBI nr
Match: KAA0051014.1 (hypothetical protein E6C27_scaffold2606G00420 [Cucumis melo var. makuwa] >TYK04401.1 hypothetical protein E5676_scaffold675G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 11 YCQLGSTFVWL-KSPSEGKGRGKLASDKEGSVTCHMGTSFAS 52
          Y  LGS    + K  S+GKGRGKLASDKEGSVTCHMGT F S
Sbjct: 42 YVPLGSHVANVRKRVSKGKGRGKLASDKEGSVTCHMGTQFCS 83

[Close]

BLAST of Cmc04g0096981 vs. NCBI nr
Match: TYJ98382.1 (uncharacterized protein E5676_scaffold232G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 24  PSEGKGRGKLASDKEGSVTCHMGTSF 50
           P EGKGRGKLASDKEGSVTCHMGT F
Sbjct: 145 PGEGKGRGKLASDKEGSVTCHMGTQF 170

[Close]

BLAST of Cmc04g0096981 vs. NCBI nr
Match: KAA0047647.1 (hypothetical protein E6C27_scaffold115G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-04
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 12  CQ-LGSTFVWLKSPSEGKGRGKLASDKEGSVTCHMGTSF 50
           CQ LG+ F  L   SEGKGRGKLASD+EGSVTCHMGT F
Sbjct: 63  CQRLGTIFKTLMG-SEGKGRGKLASDREGSVTCHMGTQF 100

[Close]

BLAST of Cmc04g0096981 vs. ExPASy TrEMBL
Match: A0A5A7SQQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold218G00080 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 24 PSEGKGRGKLASDKEGSVTCHMGTSFASAFMFQCFNIPFLM 65
          P EGKGRGKLASD+EGSVTCHMGT F     F+ +++P+L+
Sbjct: 23 PGEGKGRGKLASDREGSVTCHMGTQFC----FRVYDVPYLL 59

[Close]

BLAST of Cmc04g0096981 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 16 STFVWLKSPSEGKGRGKLASDKEGSVTCHMGTSF 50
          S  V +  P EGKGRGKLASDKEGSVTCHMGT F
Sbjct: 15 SLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQF 48

[Close]

BLAST of Cmc04g0096981 vs. ExPASy TrEMBL
Match: A0A5D3BXJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00910 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 11 YCQLGSTFVWL-KSPSEGKGRGKLASDKEGSVTCHMGTSFAS 52
          Y  LGS    + K  S+GKGRGKLASDKEGSVTCHMGT F S
Sbjct: 42 YVPLGSHVANVRKRVSKGKGRGKLASDKEGSVTCHMGTQFCS 83

[Close]

BLAST of Cmc04g0096981 vs. ExPASy TrEMBL
Match: A0A5D3CPS9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00310 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 27  GKGRGKLASDKEGSVTCHMGTSFASAFM 55
           GKGRGKLASD+EGSVTCHMGT FASA++
Sbjct: 92  GKGRGKLASDREGSVTCHMGTQFASAYI 119

[Close]

BLAST of Cmc04g0096981 vs. ExPASy TrEMBL
Match: A0A5A7U0B4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G001310 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 12  CQ-LGSTFVWLKSPSEGKGRGKLASDKEGSVTCHMGTSF 50
           CQ LG+ F  L   SEGKGRGKLASD+EGSVTCHMGT F
Sbjct: 63  CQRLGTIFKTLMG-SEGKGRGKLASDREGSVTCHMGTQF 100

The following BLAST results are available for this feature:

BLAST of Cmc04g0096981 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031891.1	4.2e-05	63.41	hypothetical protein E6C27_scaffold218G00080 [Cucumis melo var. makuwa]	[more]
KAA0045385.1	1.6e-04	76.47	hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa]	[more]
KAA0051014.1	2.7e-04	69.05	hypothetical protein E6C27_scaffold2606G00420 [Cucumis melo var. makuwa] >TYK044...	[more]
TYJ98382.1	3.6e-04	92.31	uncharacterized protein E5676_scaffold232G001250 [Cucumis melo var. makuwa]	[more]
KAA0047647.1	3.6e-04	74.36	hypothetical protein E6C27_scaffold115G001310 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0096981 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0096981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQQ8	2.0e-05	63.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TVG7	7.8e-05	76.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BXJ6	1.3e-04	69.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CPS9	1.7e-04	85.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29...	[more]
A0A5A7U0B4	1.7e-04	74.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc04g0096981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0096981.1	Cmc04g0096981.1	mRNA