Cmc04g0096901 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0096901
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 11519194 .. 11520243 (-)
RNA-Seq Expression	Cmc04g0096901
Synteny	Cmc04g0096901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGACGTGACCCTGCTAGTGTTAGACATGCAGGATTTCGATGTAATACTAGGCATGAATTGGTTGTCCGCTAACCATGCAAGTATAGACTGTTTCCGTAAGGAAGTCGTCTTTAACCCTCCCCCTGGGACTAGTTTCAAATTTAAAGGGGCAGGAATCGTATGTATACCTAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTTCCTGGAGCATCTTGGCAAGCGTAGTAGATACCAGAGAACCAGAAGTTTCCCTATCCTCCGAACCAGTGGTAAGGGAGTACCCCGATGTTTTCCCTGATGAGCTTCCAGGACTTCCACCTCCCAGGGAGATAGTCTTCGCAATTGAGTTAGAGCTAGACACTGCTTCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTGCAGAAGTTACTGGACAAGGGTTTTATTCGACCCAATGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAAAGCTGAACAAGATGATAGTTAAGAATTGCTATCCCTTGCCCAATATTGATGATTTGTTCGATCAGTTGCAAGGAGTCACCGTCTTTTCTAAGATTGACCTGCGCTCAGACTACCACCAATTGAGGATCAGAGATAGTGATATTCCTAAGACCGCTTTTCGTTCAAGATACGAACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTTCTGCGGTATTCATGGACTTGATGAATAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGGACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGCACGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGATTTTTCTCGGCCACGTAGTTTCCAGTGAAGGAGTTTCTGTGGACCCAACAAAGATCGAAGCACTTACCAGTTGA

mRNA sequence

ATGTTAGACGTGACCCTGCTAGTGTTAGACATGCAGGATTTCGATGTAATACTAGGCATGAATTGGTTGTCCGCTAACCATGCAAGTATAGACTGTTTCCGTAAGGAAGTCGTCTTTAACCCTCCCCCTGGGACTAGTTTCAAATTTAAAGGGGCAGGAATCGTATGTATACCTAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTTCCTGGAGCATCTTGGCAAGCGTAGTAGATACCAGAGAACCAGAAGTTTCCCTATCCTCCGAACCAGTGGTAAGGGAGTACCCCGATGTTTTCCCTGATGAGCTTCCAGGACTTCCACCTCCCAGGGAGATAGTCTTCGCAATTGAGTTAGAGCTAGACACTGCTTCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTGCAGAAGTTACTGGACAAGGGTTTTATTCGACCCAATGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAAAGCTGAACAAGATGATAGTTAAGAATTGCTATCCCTTGCCCAATATTGATGATTTGTTCGATCAGTTGCAAGGAGTCACCGTCTTTTCTAAGATTGACCTGCGCTCAGACTACCACCAATTGAGGATCAGAGATAGTGATATTCCTAAGACCGCTTTTCGTTCAAGATACGAACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTTCTGCGGTATTCATGGACTTGATGAATAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGGACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGCACGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGATTTTTCTCGGCCACGTAGTTTCCAGTGAAGGAGTTTCTGTGGACCCAACAAAGATCGAAGCACTTACCAGTTGA

Coding sequence (CDS)

ATGTTAGACGTGACCCTGCTAGTGTTAGACATGCAGGATTTCGATGTAATACTAGGCATGAATTGGTTGTCCGCTAACCATGCAAGTATAGACTGTTTCCGTAAGGAAGTCGTCTTTAACCCTCCCCCTGGGACTAGTTTCAAATTTAAAGGGGCAGGAATCGTATGTATACCTAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTTCCTGGAGCATCTTGGCAAGCGTAGTAGATACCAGAGAACCAGAAGTTTCCCTATCCTCCGAACCAGTGGTAAGGGAGTACCCCGATGTTTTCCCTGATGAGCTTCCAGGACTTCCACCTCCCAGGGAGATAGTCTTCGCAATTGAGTTAGAGCTAGACACTGCTTCTATCTCGAGGGCCCCTTACAGAATGGCTCCAGCTGAGCTAAAGGAGCTGAAGGTGCAGTTGCAGAAGTTACTGGACAAGGGTTTTATTCGACCCAATGTGTCACCTTGGGGAGCACCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACAGAAAGCTGAACAAGATGATAGTTAAGAATTGCTATCCCTTGCCCAATATTGATGATTTGTTCGATCAGTTGCAAGGAGTCACCGTCTTTTCTAAGATTGACCTGCGCTCAGACTACCACCAATTGAGGATCAGAGATAGTGATATTCCTAAGACCGCTTTTCGTTCAAGATACGAACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTTCTGCGGTATTCATGGACTTGATGAATAGGGTGTTTAAGGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGGACCAGGTTTTGGAGACTCTTCGAGCTAATAAGTTGCACGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGATTTTTCTCGGCCACGTAGTTTCCAGTGAAGGAGTTTCTGTGGACCCAACAAAGATCGAAGCACTTACCAGTTGA

Protein sequence

MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKVISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFAIELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMRLCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLDQVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS

Homology

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BLAST of Cmc04g0096901 vs. NCBI nr
Match: KAA0066258.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 637.1 bits (1642), Expect = 8.8e-179
Identity = 321/334 (96.11%), Postives = 324/334 (97.01%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPP GTSFKFKGAGIVCIPKV
Sbjct: 336 MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPSGTSFKFKGAGIVCIPKV 395

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPG+PPPREIVFA
Sbjct: 396 ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGIPPPREIVFA 455

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE DTA ISRA YRMAPAELKELKVQLQ+LLDKGFIRPNVSPWGAPVLFVKKKDGSMR
Sbjct: 456 IELEPDTAPISRALYRMAPAELKELKVQLQELLDKGFIRPNVSPWGAPVLFVKKKDGSMR 515

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCI Y+KLNKM VKN YPLP IDDLFDQLQG TVFSKIDLRSDYHQLRIRDSDIPKT FR
Sbjct: 516 LCIHYKKLNKMTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSDIPKTTFR 575

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD
Sbjct: 576 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 635

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSS 335
           QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSS
Sbjct: 636 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSS 669

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BLAST of Cmc04g0096901 vs. NCBI nr
Match: KAA0033486.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 627.9 bits (1618), Expect = 5.4e-176
Identity = 312/349 (89.40%), Postives = 330/349 (94.56%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFD+ILGM+WLSANHA+IDCF KEVVFNPP G SFKF+GAG+VCIPKV
Sbjct: 463 MLDVTLLVLDMQDFDMILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKV 522

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 523 ISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 582

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPY+MAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 583 IELEPGTAPISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 642

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKNCYPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRDSDIPKTAFR
Sbjct: 643 LCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFR 702

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL 
Sbjct: 703 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 762

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVS EGVSVDP KIEA+T+
Sbjct: 763 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTN 811

[Close]

BLAST of Cmc04g0096901 vs. NCBI nr
Match: KAA0040693.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 627.9 bits (1618), Expect = 5.4e-176
Identity = 311/349 (89.11%), Postives = 329/349 (94.27%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGM+WLSANHA+IDCF KEVVFNPP G  FKF+GAG+VCIPKV
Sbjct: 220 MLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGACFKFRGAGMVCIPKV 279

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 280 ISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 339

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPYRMAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 340 IELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 399

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKNCYPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRD DIPKTAFR
Sbjct: 400 LCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR 459

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDI++YSKTE EHEEHL 
Sbjct: 460 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEHLH 519

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVSSEGVSVDPTKIEA+T+
Sbjct: 520 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTN 568

[Close]

BLAST of Cmc04g0096901 vs. NCBI nr
Match: KAA0025998.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 626.3 bits (1614), Expect = 1.6e-175
Identity = 313/349 (89.68%), Postives = 329/349 (94.27%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGM+WLSANHA+IDCF KEVVFNPP G SFKF+GAG+VCIPKV
Sbjct: 463 MLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKV 522

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 523 ISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 582

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPYRMAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 583 IELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 642

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKN YPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRD DIPKTAFR
Sbjct: 643 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR 702

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL 
Sbjct: 703 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 762

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVSSEGVSVDP KIEA+T+
Sbjct: 763 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 811

[Close]

BLAST of Cmc04g0096901 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 625.9 bits (1613), Expect = 2.0e-175
Identity = 313/349 (89.68%), Postives = 329/349 (94.27%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGM+WLSANHA+IDCF KEVVFNPP G SFKF+GAG+VCIPKV
Sbjct: 435 MLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKV 494

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 495 ISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 554

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPYRMAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 555 IELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 614

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKN YPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRD DIPKTAFR
Sbjct: 615 LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR 674

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL 
Sbjct: 675 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 734

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVSSEGVSVDP KIEA+T+
Sbjct: 735 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 783

[Close]

BLAST of Cmc04g0096901 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-41
Identity = 103/288 (35.76%), Postives = 158/288 (54.86%), Query Frame = 0


Query: 65  KASKLLSQGSWSILASVVDTREPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 124
           +AS L   G +S + S + + EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 520 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 579

Query: 125 EI-----VFAIELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVL 184
           +I        IE++         PY +     +E+   +QKLLD  FI P+ SP  +PV+
Sbjct: 580 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 639

Query: 185 FVKKKDGSMRLCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIR 244
            V KKDG+ RLC+DYR LNK  + + +PLP ID+L  ++    +F+ +DL S YHQ+ + 
Sbjct: 640 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPME 699

Query: 245 DSDIPKTAFRSRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSK 304
             D  KTAF +    YE+ VM FGL NA + F   M   F+D    FV V++DDILI+S+
Sbjct: 700 PKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSE 759

Query: 305 TEAEHEEHLDQVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVS 339
           +  EH +HLD VLE L+   L  K  KC+F  ++  FLG+ +  + ++
Sbjct: 760 SPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIA 803

[Close]

BLAST of Cmc04g0096901 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-41
Identity = 103/288 (35.76%), Postives = 158/288 (54.86%), Query Frame = 0


Query: 65  KASKLLSQGSWSILASVVDTREPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 124
           +AS L   G +S + S + + EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 546 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 605

Query: 125 EI-----VFAIELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVL 184
           +I        IE++         PY +     +E+   +QKLLD  FI P+ SP  +PV+
Sbjct: 606 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 665

Query: 185 FVKKKDGSMRLCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIR 244
            V KKDG+ RLC+DYR LNK  + + +PLP ID+L  ++    +F+ +DL S YHQ+ + 
Sbjct: 666 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPME 725

Query: 245 DSDIPKTAFRSRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSK 304
             D  KTAF +    YE+ VM FGL NA + F   M   F+D    FV V++DDILI+S+
Sbjct: 726 PKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSE 785

Query: 305 TEAEHEEHLDQVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVS 339
           +  EH +HLD VLE L+   L  K  KC+F  ++  FLG+ +  + ++
Sbjct: 786 SPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIA 829

[Close]

BLAST of Cmc04g0096901 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-39
Identity = 87/254 (34.25%), Postives = 153/254 (60.24%), Query Frame = 0


Query: 85  REPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REIVFAIELELDTASISRAPYRMAPAEL 144
           +EPE+      + +E+ D+  +     LP P + + F +EL  +   +    Y + P ++
Sbjct: 370 KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKM 429

Query: 145 KELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMRLCIDYRKLNKMIVKNCYPLPNI 204
           + +  ++ + L  G IR + +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I
Sbjct: 430 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 489

Query: 205 DDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLTNASAVF 264
           + L  ++QG T+F+K+DL+S YH +R+R  D  K AFR     +E++VM +G++ A A F
Sbjct: 490 EQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHF 549

Query: 265 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLDQVLETLRANKLHAKFSKCEFWL 324
              +N +  +  ++ V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +KCEF  
Sbjct: 550 QYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQ 609

Query: 325 KKVIFLGHVVSSEG 337
            +V F+G+ +S +G
Sbjct: 610 SQVKFIGYHISEKG 619

[Close]

BLAST of Cmc04g0096901 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-39
Identity = 87/254 (34.25%), Postives = 153/254 (60.24%), Query Frame = 0


Query: 85  REPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REIVFAIELELDTASISRAPYRMAPAEL 144
           +EPE+      + +E+ D+  +     LP P + + F +EL  +   +    Y + P ++
Sbjct: 370 KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKM 429

Query: 145 KELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMRLCIDYRKLNKMIVKNCYPLPNI 204
           + +  ++ + L  G IR + +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I
Sbjct: 430 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 489

Query: 205 DDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLTNASAVF 264
           + L  ++QG T+F+K+DL+S YH +R+R  D  K AFR     +E++VM +G++ A A F
Sbjct: 490 EQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHF 549

Query: 265 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLDQVLETLRANKLHAKFSKCEFWL 324
              +N +  +  ++ V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +KCEF  
Sbjct: 550 QYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQ 609

Query: 325 KKVIFLGHVVSSEG 337
            +V F+G+ +S +G
Sbjct: 610 SQVKFIGYHISEKG 619

[Close]

BLAST of Cmc04g0096901 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-39
Identity = 87/254 (34.25%), Postives = 153/254 (60.24%), Query Frame = 0


Query: 85  REPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REIVFAIELELDTASISRAPYRMAPAEL 144
           +EPE+      + +E+ D+  +     LP P + + F +EL  +   +    Y + P ++
Sbjct: 370 KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKM 429

Query: 145 KELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMRLCIDYRKLNKMIVKNCYPLPNI 204
           + +  ++ + L  G IR + +    PV+FV KK+G++R+ +DY+ LNK +  N YPLP I
Sbjct: 430 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 489

Query: 205 DDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLTNASAVF 264
           + L  ++QG T+F+K+DL+S YH +R+R  D  K AFR     +E++VM +G++ A A F
Sbjct: 490 EQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHF 549

Query: 265 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLDQVLETLRANKLHAKFSKCEFWL 324
              +N +  +  ++ V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +KCEF  
Sbjct: 550 QYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQ 609

Query: 325 KKVIFLGHVVSSEG 337
            +V F+G+ +S +G
Sbjct: 610 SQVKFIGYHISEKG 619

[Close]

BLAST of Cmc04g0096901 vs. ExPASy TrEMBL
Match: A0A5A7VEX4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002950 PE=4 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 4.3e-179
Identity = 321/334 (96.11%), Postives = 324/334 (97.01%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPP GTSFKFKGAGIVCIPKV
Sbjct: 336 MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPSGTSFKFKGAGIVCIPKV 395

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPG+PPPREIVFA
Sbjct: 396 ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGIPPPREIVFA 455

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE DTA ISRA YRMAPAELKELKVQLQ+LLDKGFIRPNVSPWGAPVLFVKKKDGSMR
Sbjct: 456 IELEPDTAPISRALYRMAPAELKELKVQLQELLDKGFIRPNVSPWGAPVLFVKKKDGSMR 515

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCI Y+KLNKM VKN YPLP IDDLFDQLQG TVFSKIDLRSDYHQLRIRDSDIPKT FR
Sbjct: 516 LCIHYKKLNKMTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSDYHQLRIRDSDIPKTTFR 575

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD
Sbjct: 576 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 635

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSS 335
           QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSS
Sbjct: 636 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSS 669

[Close]

BLAST of Cmc04g0096901 vs. ExPASy TrEMBL
Match: A0A5A7SU25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00200 PE=4 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 2.6e-176
Identity = 312/349 (89.40%), Postives = 330/349 (94.56%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFD+ILGM+WLSANHA+IDCF KEVVFNPP G SFKF+GAG+VCIPKV
Sbjct: 463 MLDVTLLVLDMQDFDMILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKV 522

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 523 ISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 582

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPY+MAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 583 IELEPGTAPISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 642

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKNCYPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRDSDIPKTAFR
Sbjct: 643 LCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFR 702

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL 
Sbjct: 703 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 762

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVS EGVSVDP KIEA+T+
Sbjct: 763 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSREGVSVDPAKIEAVTN 811

[Close]

BLAST of Cmc04g0096901 vs. ExPASy TrEMBL
Match: A0A5A7TC72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00070 PE=4 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 2.6e-176
Identity = 311/349 (89.11%), Postives = 329/349 (94.27%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGM+WLSANHA+IDCF KEVVFNPP G  FKF+GAG+VCIPKV
Sbjct: 220 MLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGACFKFRGAGMVCIPKV 279

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 280 ISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 339

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPYRMAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 340 IELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 399

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKNCYPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRD DIPKTAFR
Sbjct: 400 LCIDYRELNKVTVKNCYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR 459

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDI++YSKTE EHEEHL 
Sbjct: 460 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEHLH 519

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVSSEGVSVDPTKIEA+T+
Sbjct: 520 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTN 568

[Close]

BLAST of Cmc04g0096901 vs. ExPASy TrEMBL
Match: A0A5A7SIJ5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003210 PE=4 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 7.6e-176
Identity = 313/349 (89.68%), Postives = 329/349 (94.27%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGM+WLSANHA+IDCF KEVVFNPP G SFKF+GAG+VCIPKV
Sbjct: 463 MLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKV 522

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 523 ISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 582

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPYRMAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 583 IELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 642

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKN YPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRD DIPKTAFR
Sbjct: 643 LCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR 702

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL 
Sbjct: 703 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 762

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVSSEGVSVDP KIEA+T+
Sbjct: 763 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 811

[Close]

BLAST of Cmc04g0096901 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 9.9e-176
Identity = 313/349 (89.68%), Postives = 329/349 (94.27%), Query Frame = 0


Query: 1   MLDVTLLVLDMQDFDVILGMNWLSANHASIDCFRKEVVFNPPPGTSFKFKGAGIVCIPKV 60
           MLDVTLLVLDMQDFDVILGM+WLSANHA+IDCF KEVVFNPP G SFKF+GAG+VCIPKV
Sbjct: 435 MLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKV 494

Query: 61  ISAMKASKLLSQGSWSILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIVFA 120
           ISAMKASKLLSQG+W ILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+ FA
Sbjct: 495 ISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFA 554

Query: 121 IELELDTASISRAPYRMAPAELKELKVQLQKLLDKGFIRPNVSPWGAPVLFVKKKDGSMR 180
           IELE  TA ISRAPYRMAPAELKELKVQLQ+LLDKGFIRP+VSPWGAPVLFVKKKDGSMR
Sbjct: 555 IELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMR 614

Query: 181 LCIDYRKLNKMIVKNCYPLPNIDDLFDQLQGVTVFSKIDLRSDYHQLRIRDSDIPKTAFR 240
           LCIDYR+LNK+ VKN YPLP IDDLFDQLQG TVFSKIDLRS YHQLRIRD DIPKTAFR
Sbjct: 615 LCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR 674

Query: 241 SRYEHYEFIVMSFGLTNASAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLD 300
           SRY HYEF+VMSFGLTNA AVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL 
Sbjct: 675 SRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 734

Query: 301 QVLETLRANKLHAKFSKCEFWLKKVIFLGHVVSSEGVSVDPTKIEALTS 350
           QVLETLRANKL+AKFSKCEFWL+KV FLGHVVSSEGVSVDP KIEA+T+
Sbjct: 735 QVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 783

[Close]

BLAST of Cmc04g0096901 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 8.1e-05
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 298 HLDQVLETLRANKLHAKFSKCEFWLKKVIFLG--HVVSSEGVSVDPTKIEAL 348
           HL  VL+    ++ +A   KC F   ++ +LG  H++S EGVS DP K+EA+
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAM 54

The following BLAST results are available for this feature:

BLAST of Cmc04g0096901 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066258.1	8.8e-179	96.11	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033486.1	5.4e-176	89.40	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0040693.1	5.4e-176	89.11	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025998.1	1.6e-175	89.68	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	2.0e-175	89.68	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0096901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.1e-41	35.76	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.1e-41	35.76	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.3e-39	34.25	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.3e-39	34.25	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.3e-39	34.25	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0096901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEX4	4.3e-179	96.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7SU25	2.6e-176	89.40	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7TC72	2.6e-176	89.11	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SIJ5	7.6e-176	89.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7V4E4	9.9e-176	89.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]

BLAST of Cmc04g0096901 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.1e-05	40.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF08284	RVP_2	coord: 4..41 e-value: 2.3E-12 score: 46.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 119..257 e-value: 6.1E-87 score: 292.4
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 132..348
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 132..348
None	No IPR available	CDD	cd01647	RT_LTR	coord: 156..332 e-value: 3.00423E-90 score: 266.383
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 172..331 e-value: 2.2E-25 score: 89.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 153..332 score: 9.244599
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..49 e-value: 5.9E-8 score: 34.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 197..332 e-value: 6.1E-87 score: 292.4
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 96..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0096901.1	Cmc04g0096901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding