Cmc04g0096781 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0096781
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 11348654 .. 11349202 (-)
RNA-Seq Expression	Cmc04g0096781
Synteny	Cmc04g0096781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGACGTTGTGGAAAAGTTGTATCACAACCTAACCATTACTTGGATTTAATTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTATTCTATAAACAGGTAATGAATTATGTAGACAAGGACCAACGAGTTAAAGCCATGGACCTTGAAATGGAATCTATGTACTTCAATTTAGTGTGGGAGCTTGTAGATCTACCTGAAGAACCTATAGGGTATAAATGGATCTATAAGAGAAAGAGAGATTCAACTAGGAAGGTACAGACCGTCAAAGCTAGACTTGTAGCAAAAGGGTATACTGAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTACTATGTTAAAGTCTATAAGGATTCTCTTGTTCATAGCCACATTTTATGATTATGAAATATGGAAAATGGATGTCATGACTGCTTTTCTGAATGTCAATCTTGAAGAGAGTATCTTTATGTCTCAACCTGAGGGGTTAATAACTCAAGGTCATGAGCAAAAAGTTAGCAAGCTAAATCGATTCATTATGGGTTGA

mRNA sequence

ATGCCTCGACGTTGTGGAAAAGTTGTATCACAACCTAACCATTACTTGGATTTAATTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTATTCTATAAACAGGTAATGAATTATGTAGACAAGGACCAACGAGTTAAAGCCATGGACCTTGAAATGGAATCTATGTACTTCAATTTAGTGTGGGAGCTTGTAGATCTACCTGAAGAACCTATAGGGTATAAATGGATCTATAAGAGAAAGAGAGATTCAACTAGGAAGGTACAGACCGTCAAAGCTAGACTTGTAGCAAAAGGGTATACTGAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTACTATGTTAAAGTCTATAAGGATTCTCTTGTTCATAGCCACATTTTATGATTATGAAATATGGAAAATGGATGTCATGACTGCTTTTCTGAATGTCAATCTTGAAGAGAGTATCTTTATGTCTCAACCTGAGGGGTTAATAACTCAAGGTCATGAGCAAAAAGTTAGCAAGCTAAATCGATTCATTATGGGTTGA

Coding sequence (CDS)

ATGCCTCGACGTTGTGGAAAAGTTGTATCACAACCTAACCATTACTTGGATTTAATTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTATTCTATAAACAGGTAATGAATTATGTAGACAAGGACCAACGAGTTAAAGCCATGGACCTTGAAATGGAATCTATGTACTTCAATTTAGTGTGGGAGCTTGTAGATCTACCTGAAGAACCTATAGGGTATAAATGGATCTATAAGAGAAAGAGAGATTCAACTAGGAAGGTACAGACCGTCAAAGCTAGACTTGTAGCAAAAGGGTATACTGAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTACTATGTTAAAGTCTATAAGGATTCTCTTGTTCATAGCCACATTTTATGATTATGAAATATGGAAAATGGATGTCATGACTGCTTTTCTGAATGTCAATCTTGAAGAGAGTATCTTTATGTCTCAACCTGAGGGGTTAATAACTCAAGGTCATGAGCAAAAAGTTAGCAAGCTAAATCGATTCATTATGGGTTGA

Protein sequence

MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMYFNLVWELVDLPEEPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPVTMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNRFIMG

Homology

[Close]

BLAST of Cmc04g0096781 vs. NCBI nr
Match: KAA0066280.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ97648.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 176/182 (96.70%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRRCGKVVSQPNHYL LIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY
Sbjct: 1   MPRRCGKVVSQPNHYLGLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60

Query: 61  FNLVWELVDLPEEPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPVTM 120
           FN VWELVDLPEEPIGYKWIYKRKRDST KVQTVKARLVAKGYTEREGVDYEETFSPVTM
Sbjct: 61  FNSVWELVDLPEEPIGYKWIYKRKRDSTGKVQTVKARLVAKGYTEREGVDYEETFSPVTM 120

Query: 121 LKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNRFI 180
           LKSIRILLFIATFYDYEIWKMDV TAFLNVNLEESIFMSQPEGLITQGHE+KVSKLNRFI
Sbjct: 121 LKSIRILLFIATFYDYEIWKMDVKTAFLNVNLEESIFMSQPEGLITQGHEKKVSKLNRFI 180

Query: 181 MG 183
            G
Sbjct: 181 YG 182

[Close]

BLAST of Cmc04g0096781 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 156/184 (84.78%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G+VVSQPN YL L ETQVVIPDDGVEDPL YKQ MN VDKDQ VKAMDLEMESMY
Sbjct: 291 MPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMY 350

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FN VWELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 351 FNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 410

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIW+MDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 411 AMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 470

Query: 181 FIMG 183
            I G
Sbjct: 471 SIYG 474

[Close]

BLAST of Cmc04g0096781 vs. NCBI nr
Match: KAA0033121.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 155/184 (84.24%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G++VSQPN YL L ETQVVIPDDGVEDPL Y Q MN VDKDQ VKAMDLEMESMY
Sbjct: 291 MPRRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYNQAMNDVDKDQWVKAMDLEMESMY 350

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FNL+WELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 351 FNLMWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 410

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIWKMDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 411 AMLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 470

Query: 181 FIMG 183
            I G
Sbjct: 471 SIYG 474

[Close]

BLAST of Cmc04g0096781 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 156/184 (84.78%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G+VVSQPN YL L ETQVVIPDDGVEDPL YKQ MN VDKDQ VKAMDLEMESMY
Sbjct: 681 MPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMY 740

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FN VWELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 741 FNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 800

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIW+MDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 801 AMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 860

Query: 181 FIMG 183
            I G
Sbjct: 861 SIYG 864

[Close]

BLAST of Cmc04g0096781 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 156/184 (84.78%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G+VVSQPN YL L ETQVVIPDDGVEDPL YKQ MN VDKDQ VKAMDLEMESMY
Sbjct: 555 MPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMY 614

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FN VWELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 615 FNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 674

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIW+MDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 675 AMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 734

Query: 181 FIMG 183
            I G
Sbjct: 735 SIYG 738

[Close]

BLAST of Cmc04g0096781 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.7e-30
Identity = 70/162 (43.21%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 23  VVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMYFNLVWELVDLP--EEPIGYKWI 82
           V+I DD   +P   K+V+++ +K+Q +KAM  EMES+  N  ++LV+LP  + P+  KW+
Sbjct: 803 VLISDD--REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWV 862

Query: 83  YKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPVTMLKSIRILLFIATFYDYEIWK 142
           +K K+D   K+   KARLV KG+ +++G+D++E FSPV  + SIR +L +A   D E+ +
Sbjct: 863 FKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQ 922

Query: 143 MDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNRFIMG 183
           +DV TAFL+ +LEE I+M QPEG    G +  V KLN+ + G
Sbjct: 923 LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYG 962

[Close]

BLAST of Cmc04g0096781 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 45   KDQRVK-AMDLEMESMYFNLVWELVDLPEEP---IGYKWIYKRKRDSTRKVQTVKARLVA 104
            KD+R + AM  E+ +   N  W+LV  P      +G +WI+ +K +S   +   KARLVA
Sbjct: 964  KDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVA 1023

Query: 105  KGYTEREGVDYEETFSPVTMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQ 164
            KGY +R G+DY ETFSPV    SIRI+L +A    + I ++DV  AFL   L + ++MSQ
Sbjct: 1024 KGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQ 1083

Query: 165  PEGLITQGHEQKVSKLNRFIMG 183
            P G I +     V KL + + G
Sbjct: 1084 PPGFIDKDRPNYVCKLRKALYG 1105

[Close]

BLAST of Cmc04g0096781 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-20
Identity = 57/142 (40.14%), Postives = 81/142 (57.04%), Query Frame = 0


Query: 45   KDQRVK-AMDLEMESMYFNLVWELVDLPEEP---IGYKWIYKRKRDSTRKVQTVKARLVA 104
            KD R + AM  E+ +   N  W+LV  P      +G +WI+ +K +S   +   KARLVA
Sbjct: 947  KDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVA 1006

Query: 105  KGYTEREGVDYEETFSPVTMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQ 164
            KGY +R G+DY ETFSPV    SIRI+L +A    + I ++DV  AFL   L + ++MSQ
Sbjct: 1007 KGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQ 1066

Query: 165  PEGLITQGHEQKVSKLNRFIMG 183
            P G + +     V +L + I G
Sbjct: 1067 PPGFVDKDRPDYVCRLRKAIYG 1088

[Close]

BLAST of Cmc04g0096781 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-18
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 33   PLFYKQVMNYVDKDQRVKAMDLEMESMYFNLVWELVDLPEEP--IGYKWIYKRKRDSTRK 92
            P  + ++    DK    +A++ E+ +   N  W +   PE    +  +W++  K +    
Sbjct: 891  PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN 950

Query: 93   VQTVKARLVAKGYTEREGVDYEETFSPVTMLKSIRILLFIATFYDYEIWKMDVMTAFLNV 152
                KARLVA+G+T++  +DYEETF+PV  + S R +L +   Y+ ++ +MDV TAFLN 
Sbjct: 951  PIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNG 1010

Query: 153  NLEESIFMSQPEGLITQGHEQKVSKLNRFIMG 183
             L+E I+M  P+G+    +   V KLN+ I G
Sbjct: 1011 TLKEEIYMRLPQGI--SCNSDNVCKLNKAIYG 1040

[Close]

BLAST of Cmc04g0096781 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-09
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 50  KAMDLEMESMYFNLVWELVDLP--EEPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTERE 109
           +AM  E++++  N  W LV  P  +  +G KW++K K  S   +  +KARLVAKG+ + E
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 110 GVDYEETFSPVTMLKSIRILLFIA 132
           G+ + ET+SPV    +IR +L +A
Sbjct: 102 GIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc04g0096781 vs. ExPASy TrEMBL
Match: A0A5A7VGK3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00060 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.8e-95
Identity = 176/182 (96.70%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRRCGKVVSQPNHYL LIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY
Sbjct: 1   MPRRCGKVVSQPNHYLGLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60

Query: 61  FNLVWELVDLPEEPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPVTM 120
           FN VWELVDLPEEPIGYKWIYKRKRDST KVQTVKARLVAKGYTEREGVDYEETFSPVTM
Sbjct: 61  FNSVWELVDLPEEPIGYKWIYKRKRDSTGKVQTVKARLVAKGYTEREGVDYEETFSPVTM 120

Query: 121 LKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNRFI 180
           LKSIRILLFIATFYDYEIWKMDV TAFLNVNLEESIFMSQPEGLITQGHE+KVSKLNRFI
Sbjct: 121 LKSIRILLFIATFYDYEIWKMDVKTAFLNVNLEESIFMSQPEGLITQGHEKKVSKLNRFI 180

Query: 181 MG 183
            G
Sbjct: 181 YG 182

[Close]

BLAST of Cmc04g0096781 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 156/184 (84.78%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G+VVSQPN YL L ETQVVIPDDGVEDPL YKQ MN VDKDQ VKAMDLEMESMY
Sbjct: 681 MPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMY 740

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FN VWELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 741 FNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 800

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIW+MDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 801 AMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 860

Query: 181 FIMG 183
            I G
Sbjct: 861 SIYG 864

[Close]

BLAST of Cmc04g0096781 vs. ExPASy TrEMBL
Match: A0A5D3CZY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00460 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 155/184 (84.24%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G++VSQPN YL L ETQVVIPDDGVEDPL Y Q MN VDKDQ VKAMDLEMESMY
Sbjct: 291 MPRRSGRIVSQPNRYLGLTETQVVIPDDGVEDPLSYNQAMNDVDKDQWVKAMDLEMESMY 350

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FNL+WELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 351 FNLMWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 410

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIWKMDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 411 AMLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 470

Query: 181 FIMG 183
            I G
Sbjct: 471 SIYG 474

[Close]

BLAST of Cmc04g0096781 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 156/184 (84.78%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G+VVSQPN YL L ETQVVIPDDGVEDPL YKQ MN VDKDQ VKAMDLEMESMY
Sbjct: 291 MPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMY 350

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FN VWELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 351 FNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 410

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIW+MDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 411 AMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 470

Query: 181 FIMG 183
            I G
Sbjct: 471 SIYG 474

[Close]

BLAST of Cmc04g0096781 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 156/184 (84.78%), Postives = 160/184 (86.96%), Query Frame = 0


Query: 1   MPRRCGKVVSQPNHYLDLIETQVVIPDDGVEDPLFYKQVMNYVDKDQRVKAMDLEMESMY 60
           MPRR G+VVSQPN YL L ETQVVIPDDGVEDPL YKQ MN VDKDQ VKAMDLEMESMY
Sbjct: 555 MPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMY 614

Query: 61  FNLVWELVDLPE--EPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREGVDYEETFSPV 120
           FN VWELVDLPE  +PIG KWIYKRKRDS  KVQT KARLVAKGYT+REGVDYEETFSPV
Sbjct: 615 FNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFSPV 674

Query: 121 TMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEGLITQGHEQKVSKLNR 180
            MLKSIRILL IATFYDYEIW+MDV TAFLN NLEESIFMSQPEG ITQG EQKV KLNR
Sbjct: 675 AMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNR 734

Query: 181 FIMG 183
            I G
Sbjct: 735 SIYG 738

[Close]

BLAST of Cmc04g0096781 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-24
Identity = 53/115 (46.09%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 51  AMDLEMESMYFNLVWELVDLP--EEPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTEREG 110
           AMD E+ +M     WE+  LP  ++PIG KW+YK K +S   ++  KARLVAKGYT++EG
Sbjct: 101 AMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEG 160

Query: 111 VDYEETFSPVTMLKSIRILLFIATFYDYEIWKMDVMTAFLNVNLEESIFMSQPEG 164
           +D+ ETFSPV  L S++++L I+  Y++ + ++D+  AFLN +L+E I+M  P G
Sbjct: 161 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPG 215

[Close]

BLAST of Cmc04g0096781 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-10
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 50  KAMDLEMESMYFNLVWELVDLP--EEPIGYKWIYKRKRDSTRKVQTVKARLVAKGYTERE 109
           +AM  E++++  N  W LV  P  +  +G KW++K K  S   +  +KARLVAKG+ + E
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 110 GVDYEETFSPVTMLKSIRILLFIA 132
           G+ + ET+SPV    +IR +L +A
Sbjct: 102 GIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc04g0096781 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066280.1	1.2e-94	96.70	gag/pol protein [Cucumis melo var. makuwa] >TYJ97648.1 gag/pol protein [Cucumis ...	[more]
TYK15984.1	2.1e-78	84.78	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033121.1	2.1e-78	84.24	gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis ...	[more]
KAA0025945.1	2.1e-78	84.78	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	2.1e-78	84.78	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0096781 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.7e-30	43.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	2.0e-20	40.85	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.7e-20	40.14	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.5e-18	33.55	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	3.6e-09	39.29	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0096781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGK3	5.8e-95	96.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00060...	[more]
A0A5A7TZD0	1.0e-78	84.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CZY3	1.0e-78	84.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G004...	[more]
A0A5D3CYF4	1.0e-78	84.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	1.0e-78	84.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Cmc04g0096781 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-24	46.09	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.6e-10	39.29	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 62..182 e-value: 1.0E-34 score: 120.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 33..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0096781.1	Cmc04g0096781.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding