Cmc04g0096461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0096461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 10720111 .. 10720764 (+)
RNA-Seq Expression	Cmc04g0096461
Synteny	Cmc04g0096461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGACAAACTTTTTTGAATGGCAATTTTGAGGAGACTATCTATATGGCTCAACCAGTAGAGTTTATAAAACACGGTCAAGAACAAAAGATTTGTAAGCTTAACAAATCCATTTATGGTTTGAAGCAATCATCTAGGTCCTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACCTTATGTTTACAAAAAGTTCATCAATTCCATTGTAGCATTCTTAGTTTTGTATGTTGATAATATCCTACTCATTGGGAATGATGTAGGTTATCTTAATGACATTAAAAAATGGCTAGCTATGCAATTTCAAATGAAAGATTTGGGAGATGCACAATATGTTCTTAGGATCCAAATAGTTTTAAACCGTAAGAATAAAACACTAGCCATGTCTCAAACATCTTATATAGATAAGATGTTGTCTAGATATAAAATACAAAATTCTAAAAAGGGTCTGTTGCCGTACATATATGGAATTCACCTGTCAAAGGAACAATGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGAAATATTCCCCATGCTTTCGCTATTGGGAGTTTGATGTATGCAATGATATGTACTAAACCTAACATTTGCTACTCAGTAGGAATGGTCAGCAAGTATTAG

mRNA sequence

ATGTCAAGACAAACTTTTTTGAATGGCAATTTTGAGGAGACTATCTATATGGCTCAACCAGTAGAGTTTATAAAACACGGTCAAGAACAAAAGATTTGTAAGCTTAACAAATCCATTTATGGTTTGAAGCAATCATCTAGGTCCTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACCTTATGTTTACAAAAAGTTCATCAATTCCATTGTAGCATTCTTAGTTTTGTATGTTGATAATATCCTACTCATTGGGAATGATGTAGGTTATCTTAATGACATTAAAAAATGGCTAGCTATGCAATTTCAAATGAAAGATTTGGGAGATGCACAATATGTTCTTAGGATCCAAATAGTTTTAAACCGTAAGAATAAAACACTAGCCATGTCTCAAACATCTTATATAGATAAGATGTTGTCTAGATATAAAATACAAAATTCTAAAAAGGGTCTGTTGCCGTACATATATGGAATTCACCTGTCAAAGGAACAATGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGAAATATTCCCCATGCTTTCGCTATTGGGAGTTTGATGTATGCAATGATATGTACTAAACCTAACATTTGCTACTCAGTAGGAATGGTCAGCAAGTATTAG

Coding sequence (CDS)

ATGTCAAGACAAACTTTTTTGAATGGCAATTTTGAGGAGACTATCTATATGGCTCAACCAGTAGAGTTTATAAAACACGGTCAAGAACAAAAGATTTGTAAGCTTAACAAATCCATTTATGGTTTGAAGCAATCATCTAGGTCCTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACCTTATGTTTACAAAAAGTTCATCAATTCCATTGTAGCATTCTTAGTTTTGTATGTTGATAATATCCTACTCATTGGGAATGATGTAGGTTATCTTAATGACATTAAAAAATGGCTAGCTATGCAATTTCAAATGAAAGATTTGGGAGATGCACAATATGTTCTTAGGATCCAAATAGTTTTAAACCGTAAGAATAAAACACTAGCCATGTCTCAAACATCTTATATAGATAAGATGTTGTCTAGATATAAAATACAAAATTCTAAAAAGGGTCTGTTGCCGTACATATATGGAATTCACCTGTCAAAGGAACAATGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGAAATATTCCCCATGCTTTCGCTATTGGGAGTTTGATGTATGCAATGATATGTACTAAACCTAACATTTGCTACTCAGTAGGAATGGTCAGCAAGTATTAG

Protein sequence

MSRQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGFEQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYVLRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVEDMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY

Homology

[Close]

BLAST of Cmc04g0096461 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.5 bits (937), Expect = 3.1e-97
Identity = 177/215 (82.33%), Postives = 194/215 (90.23%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           +  FLNGN EE+IYMAQP  FIK GQEQKICK  KSIYGLKQ+SRSWNIRFDTAIKSYGF
Sbjct: 25  KTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKSIYGLKQASRSWNIRFDTAIKSYGF 84

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNVD+P VYKK +NSIVAFLVLYVD+ILL+GNDVGYL DIKKWLA QFQMKD GDAQYV
Sbjct: 85  EQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVGYLTDIKKWLATQFQMKDFGDAQYV 144

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L IQIV NRKN+TLAMS+ SYIDKMLSRYK+QNSKKGLLPY YGIHLSKEQCPKTPQEVE
Sbjct: 145 LGIQIVRNRKNRTLAMSRASYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVE 204

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
           DMR IP+AF +GSLMYAM+CT+P+IC+ V MVS+Y
Sbjct: 205 DMRKIPYAFVVGSLMYAMLCTRPDICFLVEMVSRY 239

[Close]

BLAST of Cmc04g0096461 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 3.8e-95
Identity = 176/214 (82.24%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           + TFLN N EE+IYM QP  FI+ GQEQKICKL KSIYGLKQ+SRS NIRFDTAIKSYG 
Sbjct: 342 KTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGL 401

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNVDEP VYK+ +NS VAFLVLYVD+ILLIGNDVG+L DIKKWLAMQFQMKDLG+AQYV
Sbjct: 402 EQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYV 461

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L +QIV NRKNKTLAMSQTSYIDKMLSRYK+ NSKKGLLPY YGIHLSKEQCPKTPQEVE
Sbjct: 462 LGVQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVE 521

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSK 217
           DM NIP+A A+GSLMY M+CT+PNICYSVG+VS+
Sbjct: 522 DMSNIPYASAVGSLMYVMLCTRPNICYSVGIVSR 555

[Close]

BLAST of Cmc04g0096461 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 356.3 bits (913), Expect = 1.9e-94
Identity = 170/215 (79.07%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 3    RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
            +  FLNGN EE+IYM QP  FI   QEQK+CKL KSIYGLKQ+SRSWNIRFDTAIKSYGF
Sbjct: 918  KTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGF 977

Query: 63   EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
            EQNVDEP VYKK +NS+VAFL+LYVD+ILLIGNDV YL D+KKWL  QFQMKDLG+AQY+
Sbjct: 978  EQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYI 1037

Query: 123  LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
            L IQIV NRKNKTLAMSQ SYIDK+LSRYK+QNSKKG LP+ +GIHLSKEQCPKTPQEVE
Sbjct: 1038 LGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVE 1097

Query: 183  DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
            DMRNIP++ A+GSLMYAM+CT+P+ICYSVG+VS+Y
Sbjct: 1098 DMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRY 1132

[Close]

BLAST of Cmc04g0096461 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 355.5 bits (911), Expect = 3.2e-94
Identity = 173/215 (80.47%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           +  FLNGN EE+IYM QP  FI+ GQEQK+CKL KSIYGLKQ+SRSWNIRFDT IKSYGF
Sbjct: 248 KTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGF 307

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNVDEP VYK+ INS VAFLVLYVD+ILLIGN+V +L DIK+WL  QFQMKDLG AQYV
Sbjct: 308 EQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVDHLTDIKEWLDTQFQMKDLGSAQYV 367

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L IQIV NRKNKTLAMSQTSYIDKMLSRYK+QNSKKGLLPY YGIHLSKEQCPKTPQEV+
Sbjct: 368 LGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVK 427

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
           DM NIP+A A+GSLMYAM+C +P+ICYSVG+VS+Y
Sbjct: 428 DMSNIPYASAVGSLMYAMLCIRPDICYSVGIVSRY 462

[Close]

BLAST of Cmc04g0096461 vs. NCBI nr
Match: KAA0061927.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 344.4 bits (882), Expect = 7.4e-91
Identity = 168/215 (78.14%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           +  FLNGN E ++YMAQP  FIK+GQEQK+CKL KSIY LKQ+SRSWNI+FDT IK+YGF
Sbjct: 25  KTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKSIYDLKQASRSWNIKFDTVIKTYGF 84

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNV+EP VYKK +NSIVAFLVLYVD+ILLIGNDVGYL DI+KWLA QFQMK LGDAQYV
Sbjct: 85  EQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVGYLTDIEKWLATQFQMKYLGDAQYV 144

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L IQIV NRKN+TL MSQ SYIDKMLSRYKIQ S KGLL Y YGIHLSK+QCPKTPQEVE
Sbjct: 145 LGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNKGLLSYRYGIHLSKKQCPKTPQEVE 204

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
           DMR IP+A  IGSLMYAM+CT+P+IC+ V MVS+Y
Sbjct: 205 DMRKIPYASVIGSLMYAMLCTRPDICFLVRMVSRY 239

[Close]

BLAST of Cmc04g0096461 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.2e-47
Identity = 92/216 (42.59%), Postives = 146/216 (67.59%), Query Frame = 0


Query: 3    RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
            +  FL+G+ EE IYM QP  F   G++  +CKLNKS+YGLKQ+ R W ++FD+ +KS  +
Sbjct: 924  KTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTY 983

Query: 63   EQNVDEPYVY-KKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQY 122
             +   +P VY K+F  +    L+LYVD++L++G D G +  +K  L+  F MKDLG AQ 
Sbjct: 984  LKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQ 1043

Query: 123  VLRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEV 182
            +L ++IV  R ++ L +SQ  YI+++L R+ ++N+K    P    + LSK+ CP T +E 
Sbjct: 1044 ILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEK 1103

Query: 183  EDMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
             +M  +P++ A+GSLMYAM+CT+P+I ++VG+VS++
Sbjct: 1104 GNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRF 1139

[Close]

BLAST of Cmc04g0096461 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 70/222 (31.53%), Postives = 122/222 (54.95%), Query Frame = 0


Query: 3    RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
            +  FLNG  +E IYM  P           +CKLNK+IYGLKQ++R W   F+ A+K   F
Sbjct: 1004 KTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEF 1063

Query: 63   EQNVDEPYVY---KKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDA 122
              +  +  +Y   K  IN  + +++LYVD++++   D+  +N+ K++L  +F+M DL + 
Sbjct: 1064 VNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI 1123

Query: 123  QYVLRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLP----YIYGIHLSKEQCP 182
            ++ + I+I +  +   + +SQ++Y+ K+LS++ ++N      P      Y +  S E C 
Sbjct: 1124 KHFIGIRIEM--QEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC- 1183

Query: 183  KTPQEVEDMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
                      N P    IG LMY M+CT+P++  +V ++S+Y
Sbjct: 1184 ----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRY 1209

[Close]

BLAST of Cmc04g0096461 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-20
Identity = 61/212 (28.77%), Postives = 107/212 (50.47%), Query Frame = 0


Query: 6    FLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGFEQN 65
            FL G   + +YM+QP  F+   +   +C+L K+IYGLKQ+ R+W +   T + + GF  +
Sbjct: 1053 FLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNS 1112

Query: 66   VDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYVLRI 125
            + +  ++       + ++++YVD+IL+ GND   L      L+ +F +K+  D  Y L I
Sbjct: 1113 ISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGI 1172

Query: 126  QIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVEDMR 185
            +    R  + L +SQ  Y   +L+R  +  +K    P      L+     K P   E   
Sbjct: 1173 E--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE--- 1232

Query: 186  NIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
               +   +GSL Y +  T+P++ Y+V  +S+Y
Sbjct: 1233 ---YRGIVGSLQY-LAFTRPDLSYAVNRLSQY 1255

[Close]

BLAST of Cmc04g0096461 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-19
Identity = 63/212 (29.72%), Postives = 107/212 (50.47%), Query Frame = 0


Query: 6    FLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGFEQN 65
            FL G   + +YM+QP  FI   +   +CKL K++YGLKQ+ R+W +     + + GF  +
Sbjct: 1070 FLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNS 1129

Query: 66   VDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYVLRI 125
            V +  ++       + ++++YVD+IL+ GND   L++    L+ +F +KD  +  Y L I
Sbjct: 1130 VSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGI 1189

Query: 126  QIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVEDMR 185
            +    R    L +SQ  YI  +L+R  +  +K    P      LS     K     E   
Sbjct: 1190 E--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE--- 1249

Query: 186  NIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
               +   +GSL Y +  T+P+I Y+V  +S++
Sbjct: 1250 ---YRGIVGSLQY-LAFTRPDISYAVNRLSQF 1272

[Close]

BLAST of Cmc04g0096461 vs. ExPASy Swiss-Prot
Match: P0C2J7 (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.6e-09
Identity = 45/185 (24.32%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 6    FLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGFEQN 65
            FL    EE IY+  P +       + + KLNK++YGLKQS + WN      +   G + N
Sbjct: 1388 FLYAKLEEEIYIPHPHD------RRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDN 1447

Query: 66   VDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDA------ 125
               P +Y+    +++  + +YVD+ ++  ++   L++    L   F++K  G        
Sbjct: 1448 SYTPGLYQTEDKNLM--IAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLD 1507

Query: 126  QYVLRIQIVLNRKNKTLAMSQTSYIDKMLSRY--KIQNSKKGLLPYI--YGIHLSKEQCP 181
              +L + +V N++  T+ ++  S+I++M  +Y  +++  +K  +P++  Y I   K+   
Sbjct: 1508 TDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQ 1564

[Close]

BLAST of Cmc04g0096461 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 177/215 (82.33%), Postives = 194/215 (90.23%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           +  FLNGN EE+IYMAQP  FIK GQEQKICK  KSIYGLKQ+SRSWNIRFDTAIKSYGF
Sbjct: 25  KTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKSIYGLKQASRSWNIRFDTAIKSYGF 84

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNVD+P VYKK +NSIVAFLVLYVD+ILL+GNDVGYL DIKKWLA QFQMKD GDAQYV
Sbjct: 85  EQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVGYLTDIKKWLATQFQMKDFGDAQYV 144

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L IQIV NRKN+TLAMS+ SYIDKMLSRYK+QNSKKGLLPY YGIHLSKEQCPKTPQEVE
Sbjct: 145 LGIQIVRNRKNRTLAMSRASYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVE 204

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
           DMR IP+AF +GSLMYAM+CT+P+IC+ V MVS+Y
Sbjct: 205 DMRKIPYAFVVGSLMYAMLCTRPDICFLVEMVSRY 239

[Close]

BLAST of Cmc04g0096461 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.8e-95
Identity = 176/214 (82.24%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           + TFLN N EE+IYM QP  FI+ GQEQKICKL KSIYGLKQ+SRS NIRFDTAIKSYG 
Sbjct: 342 KTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGL 401

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNVDEP VYK+ +NS VAFLVLYVD+ILLIGNDVG+L DIKKWLAMQFQMKDLG+AQYV
Sbjct: 402 EQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYV 461

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L +QIV NRKNKTLAMSQTSYIDKMLSRYK+ NSKKGLLPY YGIHLSKEQCPKTPQEVE
Sbjct: 462 LGVQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVE 521

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSK 217
           DM NIP+A A+GSLMY M+CT+PNICYSVG+VS+
Sbjct: 522 DMSNIPYASAVGSLMYVMLCTRPNICYSVGIVSR 555

[Close]

BLAST of Cmc04g0096461 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 9.1e-95
Identity = 170/215 (79.07%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 3    RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
            +  FLNGN EE+IYM QP  FI   QEQK+CKL KSIYGLKQ+SRSWNIRFDTAIKSYGF
Sbjct: 918  KTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGF 977

Query: 63   EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
            EQNVDEP VYKK +NS+VAFL+LYVD+ILLIGNDV YL D+KKWL  QFQMKDLG+AQY+
Sbjct: 978  EQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYI 1037

Query: 123  LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
            L IQIV NRKNKTLAMSQ SYIDK+LSRYK+QNSKKG LP+ +GIHLSKEQCPKTPQEVE
Sbjct: 1038 LGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVE 1097

Query: 183  DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
            DMRNIP++ A+GSLMYAM+CT+P+ICYSVG+VS+Y
Sbjct: 1098 DMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRY 1132

[Close]

BLAST of Cmc04g0096461 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.5e-94
Identity = 173/215 (80.47%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           +  FLNGN EE+IYM QP  FI+ GQEQK+CKL KSIYGLKQ+SRSWNIRFDT IKSYGF
Sbjct: 248 KTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGF 307

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNVDEP VYK+ INS VAFLVLYVD+ILLIGN+V +L DIK+WL  QFQMKDLG AQYV
Sbjct: 308 EQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVDHLTDIKEWLDTQFQMKDLGSAQYV 367

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L IQIV NRKNKTLAMSQTSYIDKMLSRYK+QNSKKGLLPY YGIHLSKEQCPKTPQEV+
Sbjct: 368 LGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVK 427

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
           DM NIP+A A+GSLMYAM+C +P+ICYSVG+VS+Y
Sbjct: 428 DMSNIPYASAVGSLMYAMLCIRPDICYSVGIVSRY 462

[Close]

BLAST of Cmc04g0096461 vs. ExPASy TrEMBL
Match: A0A5A7V4T1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002110 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.6e-91
Identity = 168/215 (78.14%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 3   RQTFLNGNFEETIYMAQPVEFIKHGQEQKICKLNKSIYGLKQSSRSWNIRFDTAIKSYGF 62
           +  FLNGN E ++YMAQP  FIK+GQEQK+CKL KSIY LKQ+SRSWNI+FDT IK+YGF
Sbjct: 25  KTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKSIYDLKQASRSWNIKFDTVIKTYGF 84

Query: 63  EQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYV 122
           EQNV+EP VYKK +NSIVAFLVLYVD+ILLIGNDVGYL DI+KWLA QFQMK LGDAQYV
Sbjct: 85  EQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVGYLTDIEKWLATQFQMKYLGDAQYV 144

Query: 123 LRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVE 182
           L IQIV NRKN+TL MSQ SYIDKMLSRYKIQ S KGLL Y YGIHLSK+QCPKTPQEVE
Sbjct: 145 LGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNKGLLSYRYGIHLSKKQCPKTPQEVE 204

Query: 183 DMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
           DMR IP+A  IGSLMYAM+CT+P+IC+ V MVS+Y
Sbjct: 205 DMRKIPYASVIGSLMYAMLCTRPDICFLVRMVSRY 239

[Close]

BLAST of Cmc04g0096461 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-17
Identity = 60/216 (27.78%), Postives = 109/216 (50.46%), Query Frame = 0


Query: 6   FLNGNFEETIYMAQPVEF-IKHGQE---QKICKLNKSIYGLKQSSRSWNIRFDTAIKSYG 65
           FLNG+ +E IYM  P  +  + G       +C L KSIYGLKQ+SR W ++F   +  +G
Sbjct: 199 FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFG 258

Query: 66  FEQNVDEPYVYKKFINSIVAFLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQY 125
           F Q+  +   + K   ++   +++YVD+I++  N+   ++++K  L   F+++DLG  +Y
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318

Query: 126 VLRIQIVLNRKNKTLAMSQTSYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEV 185
            L ++I   R    + + Q  Y   +L    +   K   +P    +  S      +  + 
Sbjct: 319 FLGLEIA--RSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH----SGGDF 378

Query: 186 EDMRNIPHAFAIGSLMYAMICTKPNICYSVGMVSKY 218
            D +   +   IG LMY  I T+ +I ++V  +S++
Sbjct: 379 VDAK--AYRRLIGRLMYLQI-TRLDISFAVNKLSQF 405

[Close]

BLAST of Cmc04g0096461 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 82  FLVLYVDNILLIGNDVGYLNDIKKWLAMQFQMKDLGDAQYVLRIQIVLNRKNKTLAMSQT 141
           +L+LYVD+ILL G+    LN +   L+  F MKDLG   Y L IQI  +     L +SQT
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 142 SYIDKMLSRYKIQNSKKGLLPYIYGIHLSKEQCPKTPQEVEDMRNIPHAFAIGSLMYAMI 201
            Y +++L+   + + K    P    ++ S     K P +  D R+I     +G+L Y + 
Sbjct: 62  KYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYP-DPSDFRSI-----VGALQY-LT 121

Query: 202 CTKPNICYSVGMV 215
            T+P+I Y+V +V
Sbjct: 122 LTRPDISYAVNIV 124

The following BLAST results are available for this feature:

BLAST of Cmc04g0096461 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09500.1	3.1e-97	82.33	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	3.8e-95	82.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	1.9e-94	79.07	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0045356.1	3.2e-94	80.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061927.1	7.4e-91	78.14	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0096461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.2e-47	42.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-23	31.53	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.4e-20	28.77	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.6e-19	29.72	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0C2J7	9.6e-09	24.32	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0096461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDT9	1.5e-97	82.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
A0A5D3BX45	1.8e-95	82.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	9.1e-95	79.07	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TTA2	1.5e-94	80.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5A7V4T1	3.6e-91	78.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00211...	[more]

BLAST of Cmc04g0096461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.4e-17	27.78	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.7e-08	34.59	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 5..162 e-value: 2.7E-35 score: 122.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 5..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0096461.1	Cmc04g0096461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding