Cmc04g0095941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 9808414 .. 9808788 (-)
RNA-Seq Expression	Cmc04g0095941
Synteny	Cmc04g0095941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAACATGGGACTTAGTGGACCTTCCCATGGGAAGCAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAATCAAATGGGTCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTAGCTGCCATACATAGCCTTCTTATTCACCAAATGGACATAAAAACTGTCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTCTTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCTGTGTAAACTGA

mRNA sequence

ATGAATCAAACATGGGACTTAGTGGACCTTCCCATGGGAAGCAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAATCAAATGGGTCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTAGCTGCCATACATAGCCTTCTTATTCACCAAATGGACATAAAAACTGTCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTCTTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCTGTGTAAACTGA

Coding sequence (CDS)

ATGAATCAAACATGGGACTTAGTGGACCTTCCCATGGGAAGCAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAATCAAATGGGTCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTAGCTGCCATACATAGCCTTCTTATTCACCAAATGGACATAAAAACTGTCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTCTTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCTGTGTAAACTGA

Protein sequence

MNQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKSCVN

Homology

[Close]

BLAST of Cmc04g0095941 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 6.8e-57
Identity = 110/121 (90.91%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MNQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 60
           MN TW+LVDLPMG+KPIRCKWIFKRKTK NG IERYKARLVVVGYTQKQG+DYFDTYSPV
Sbjct: 862 MNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV 921

Query: 61  TKITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRK 120
           TKITTIRALIALAAIH+LLIHQMD+KT FLNG+LEEEIYMTQPEGFKI GQENKVCKLRK
Sbjct: 922 TKITTIRALIALAAIHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRK 981

Query: 121 S 122
           S
Sbjct: 982 S 982

[Close]

BLAST of Cmc04g0095941 vs. NCBI nr
Match: PNX71449.1 (retrotransposon-related protein, partial [Trifolium pratense])

HSP 1 Score: 191.0 bits (484), Expect = 6.0e-45
Identity = 86/120 (71.67%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW++VDLP G+KPI CKWIFK+K K +GS+E+YKARLV  GYTQK+G DYFDTYSPV 
Sbjct: 458 NHTWEIVDLPQGAKPIGCKWIFKKKLKPDGSVEKYKARLVAKGYTQKKGFDYFDTYSPVA 517

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           ++T+IR  IALA+IH+L+IHQMD+KT FLNGDLEEEIYM QPEGF + G+ENKVC+L KS
Sbjct: 518 RMTSIRVAIALASIHNLVIHQMDVKTAFLNGDLEEEIYMDQPEGFVVPGKENKVCRLVKS 577

[Close]

BLAST of Cmc04g0095941 vs. NCBI nr
Match: PHT43509.1 (ATP phosphoribosyltransferase 1, chloroplastic [Capsicum baccatum])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 88/120 (73.33%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW+LVDLP G+KP+  KWIFKRK K++GSIE+YKARLVV G+ QK+G+DYFDTYSPVT
Sbjct: 23  NHTWELVDLPPGNKPLGSKWIFKRKMKTDGSIEKYKARLVVKGFNQKEGLDYFDTYSPVT 82

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           +IT+IR LIALAA++ L IHQMD+KT FLNG+LEEEIYM QPEGF + G+ENKVCKL KS
Sbjct: 83  RITSIRMLIALAAVYDLQIHQMDVKTAFLNGELEEEIYMEQPEGFVVPGKENKVCKLVKS 142

[Close]

BLAST of Cmc04g0095941 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 188.0 bits (476), Expect = 5.0e-44
Identity = 85/120 (70.83%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW+L DLP G+KPI  KWIFK+K + +G++++YKARLV+ G+TQK G+DYFDTYSPVT
Sbjct: 214 NHTWELTDLPKGNKPIGSKWIFKKKLRPDGTVDKYKARLVIRGFTQKHGLDYFDTYSPVT 273

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           KITTIR+LI++AAI+ LLIHQMD+KT FLNGDL+EEIYM QPEGF + G E+KVCKLRKS
Sbjct: 274 KITTIRSLISIAAINGLLIHQMDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKS 333

[Close]

BLAST of Cmc04g0095941 vs. NCBI nr
Match: PHT42147.1 (hypothetical protein CQW23_16172 [Capsicum baccatum])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 86/120 (71.67%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW+LVDLP G+KP+  KWIFKRK K++G+I++YKARLVV G+ QK+G+DYFDTYSPVT
Sbjct: 23  NHTWELVDLPPGNKPLGSKWIFKRKMKTDGTIDKYKARLVVKGFNQKEGLDYFDTYSPVT 82

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           +IT+IR LIALAA++ L IHQMD+KT FLNG+LEEEIYM QPEGF + G+ENKVCKL KS
Sbjct: 83  RITSIRMLIALAAVYDLQIHQMDVKTAFLNGELEEEIYMEQPEGFVVPGKENKVCKLVKS 142

[Close]

BLAST of Cmc04g0095941 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-34
Identity = 66/120 (55.00%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N T+ LV+LP G +P++CKW+FK K   +  + RYKARLVV G+ QK+GID+ + +SPV 
Sbjct: 840 NGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVV 899

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           K+T+IR +++LAA   L + Q+D+KT FL+GDLEEEIYM QPEGF++ G+++ VCKL KS
Sbjct: 900 KMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKS 959

[Close]

BLAST of Cmc04g0095941 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 0


Query: 2    NQTWDLVDLPMGSKPI-RCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 61
            N TWDLV  P     I  C+WIF +K  S+GS+ RYKARLV  GY Q+ G+DY +T+SPV
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 62   TKITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRK 121
             K T+IR ++ +A   S  I Q+D+   FL G L +++YM+QP GF    + N VCKLRK
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRK 1101

[Close]

BLAST of Cmc04g0095941 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-26
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 2    NQTWDLVDLPMGSKPI-RCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 61
            N TWDLV  P  S  I  C+WIF +K  S+GS+ RYKARLV  GY Q+ G+DY +T+SPV
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

Query: 62   TKITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRK 121
             K T+IR ++ +A   S  I Q+D+   FL G L +E+YM+QP GF    + + VC+LRK
Sbjct: 1025 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRK 1084

[Close]

BLAST of Cmc04g0095941 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-23
Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1    MNQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 60
            +N TW +   P     +  +W+F  K    G+  RYKARLV  G+TQK  IDY +T++PV
Sbjct: 919  INNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPV 978

Query: 61   TKITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRK 120
             +I++ R +++L   ++L +HQMD+KT FLNG L+EEIYM  P+G  I    + VCKL K
Sbjct: 979  ARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNK 1037

Query: 121  S 122
            +
Sbjct: 1039 A 1037

[Close]

BLAST of Cmc04g0095941 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N+TW LV  P+    + CKW+FK K  S+G+++R KARLV  G+ Q++GI + +TYSPV 
Sbjct: 54  NKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVV 113

Query: 62  KITTIRALIALA 74
           +  TIR ++ +A
Sbjct: 114 RTATIRTILNVA 125

[Close]

BLAST of Cmc04g0095941 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.3e-57
Identity = 110/121 (90.91%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MNQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 60
           MN TW+LVDLPMG+KPIRCKWIFKRKTK NG IERYKARLVVVGYTQKQG+DYFDTYSPV
Sbjct: 862 MNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV 921

Query: 61  TKITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRK 120
           TKITTIRALIALAAIH+LLIHQMD+KT FLNG+LEEEIYMTQPEGFKI GQENKVCKLRK
Sbjct: 922 TKITTIRALIALAAIHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRK 981

Query: 121 S 122
           S
Sbjct: 982 S 982

[Close]

BLAST of Cmc04g0095941 vs. ExPASy TrEMBL
Match: A0A2K3KYW3 (Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g027329 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.9e-45
Identity = 86/120 (71.67%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW++VDLP G+KPI CKWIFK+K K +GS+E+YKARLV  GYTQK+G DYFDTYSPV 
Sbjct: 458 NHTWEIVDLPQGAKPIGCKWIFKKKLKPDGSVEKYKARLVAKGYTQKKGFDYFDTYSPVA 517

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           ++T+IR  IALA+IH+L+IHQMD+KT FLNGDLEEEIYM QPEGF + G+ENKVC+L KS
Sbjct: 518 RMTSIRVAIALASIHNLVIHQMDVKTAFLNGDLEEEIYMDQPEGFVVPGKENKVCRLVKS 577

[Close]

BLAST of Cmc04g0095941 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 86/120 (71.67%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW+LV+LP G K I  KW+FK+K K++GSIE++KARLV  GYTQK+GIDYFDTYSPVT
Sbjct: 302 NHTWELVELPRGCKTIGSKWVFKKKLKADGSIEKFKARLVAKGYTQKEGIDYFDTYSPVT 361

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           ++TTIR L+A+A+I+ L+IHQMD+KT FLNGDL+EEIYM QPEGF + GQENKVCKLRKS
Sbjct: 362 RLTTIRILVAIASIYKLIIHQMDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKS 421

[Close]

BLAST of Cmc04g0095941 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 86/120 (71.67%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW+LV+LP G K I  KW+FK+K K++GSIE++KARLV  GYTQK+GIDYFDTYSPVT
Sbjct: 812 NHTWELVELPRGCKTIGSKWVFKKKLKADGSIEKFKARLVAKGYTQKEGIDYFDTYSPVT 871

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           ++TTIR L+A+A+I+ L+IHQMD+KT FLNGDL+EEIYM QPEGF + GQENKVCKLRKS
Sbjct: 872 RLTTIRILVAIASIYKLIIHQMDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKS 931

[Close]

BLAST of Cmc04g0095941 vs. ExPASy TrEMBL
Match: A0A2G2WEA7 (ATP phosphoribosyltransferase 1, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_17534 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 88/120 (73.33%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N TW+LVDLP G+KP+  KWIFKRK K++GSIE+YKARLVV G+ QK+G+DYFDTYSPVT
Sbjct: 23  NHTWELVDLPPGNKPLGSKWIFKRKMKTDGSIEKYKARLVVKGFNQKEGLDYFDTYSPVT 82

Query: 62  KITTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQENKVCKLRKS 121
           +IT+IR LIALAA++ L IHQMD+KT FLNG+LEEEIYM QPEGF + G+ENKVCKL KS
Sbjct: 83  RITSIRMLIALAAVYDLQIHQMDVKTAFLNGELEEEIYMEQPEGFVVPGKENKVCKLVKS 142

[Close]

BLAST of Cmc04g0095941 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 137.9 bits (346), Expect = 5.6e-33
Identity = 62/122 (50.82%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 4   TWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKI 63
           TW++  LP   KPI CKW++K K  S+G+IERYKARLV  GYTQ++GID+ +T+SPV K+
Sbjct: 114 TWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKL 173

Query: 64  TTIRALIALAAIHSLLIHQMDIKTVFLNGDLEEEIYMTQPEGFKILGQE----NKVCKLR 122
           T+++ ++A++AI++  +HQ+DI   FLNGDL+EEIYM  P G+     +    N VC L+
Sbjct: 174 TSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLK 233

[Close]

BLAST of Cmc04g0095941 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 2   NQTWDLVDLPMGSKPIRCKWIFKRKTKSNGSIERYKARLVVVGYTQKQGIDYFDTYSPVT 61
           N+TW LV  P+    + CKW+FK K  S+G+++R KARLV  G+ Q++GI + +TYSPV 
Sbjct: 54  NKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVV 113

Query: 62  KITTIRALIALA 74
           +  TIR ++ +A
Sbjct: 114 RTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc04g0095941 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	6.8e-57	90.91	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
PNX71449.1	6.0e-45	71.67	retrotransposon-related protein, partial [Trifolium pratense]	[more]
PHT43509.1	2.3e-44	73.33	ATP phosphoribosyltransferase 1, chloroplastic [Capsicum baccatum]	[more]
KAD6453934.1	5.0e-44	70.83	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]
PHT42147.1	1.1e-43	71.67	hypothetical protein CQW23_16172 [Capsicum baccatum]	[more]

BLAST of Cmc04g0095941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-34	55.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.3e-26	48.76	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.7e-26	48.76	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.0e-23	43.80	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.6e-13	45.83	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0095941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	3.3e-57	90.91	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A2K3KYW3	2.9e-45	71.67	Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L19...	[more]
A0A2N9EQT1	4.9e-45	71.67	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9H4B0	4.9e-45	71.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1	[more]
A0A2G2WEA7	1.1e-44	73.33	ATP phosphoribosyltransferase 1, chloroplastic OS=Capsicum baccatum OX=33114 GN=...	[more]

BLAST of Cmc04g0095941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.6e-33	50.82	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.2e-14	45.83	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..121 e-value: 2.2E-42 score: 145.3
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 25..123
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 25..123
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095941.1	Cmc04g0095941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
biological_process	GO:0015074	DNA integration
biological_process	GO:0000105	histidine biosynthetic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0060320	rejection of self pollen
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0007165	signal transduction
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0000428	DNA-directed RNA polymerase complex
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003879	ATP phosphoribosyltransferase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0030527	structural constituent of chromatin
molecular_function	GO:0008270	zinc ion binding