Cmc04g0095641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	30S ribosomal protein
Location	CMiso1.1chr04: 9265127 .. 9266941 (+)
RNA-Seq Expression	Cmc04g0095641
Synteny	Cmc04g0095641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGTTATTGCCCCTTTTCCAAAGTTATGGTAGTTTTCTTGATTTTGAGTCATTTTGCAAAAAATAAGTGTTCAAAGGTTTTACTGAGGAATGGCACGGGTAACTAGAATTTGTGAGGAACATTATGATTTTATTTTGTTTTTCTCCTTTCTGAGAACAATTGAAATTCTTACATGCTTGACACTCTCAGAAGTTTTTGTTCTGATCTTTTTATGAAAGAAATGCCTAAGTTATCCAGAAAAGAGGAAGAAAGCAGAAGGTACTGAAGTCTTGCATCAGTAGCTTAAATTTGAACATTTTAACTGCAACTTTTTGGGATTCATGGAAAGAGTTGTAGATTCGAGAAAAATGTTTTTTAATATCATGATTGCAACTTTTCGGATTCATATATTGAAAATATAACTAAAAGCAACCACTTAATGGGATAGTATCACTCAGTTTGTTTTCCTATTCTCCTTTGGCTCCATTGGATGTTTGTTTCTATCTTCTCCTTTTCGATTACTTTACACATATTTTTTTGTTTATTCCAGATGAGAACAGTTTGGCACGATATGATTGGTCTCCATTGTCCAATTTTTGGCGTCAATCGTGAGGTATTTATTCATCAATTGAGTTCTATTGTATGTGTTGTCCATCTTTCCACTCTGCTTTTGATTTAATCAACTGATCCATTTAAATTTTTAGGTTTTAGTTCCTATACCCAAACCGGTCGGCTACACAGGAGCTGATCCCTGTAAAATGTGTGAGAATCTTGTACTGAACATTGTGCTGAATTATTTTAAATGTACATTAACTCAATTATAAGTGTTTGTATATCATAATCTTATAACCTGTGTCTGCTGATCAACGCTATCTTTTGTCTTATGTTGAACTTTTTACTATGATTATGAAATTGGCCAGTGGAGACCGGTTCCTCTAGACAGAGAATAATGGTATGGACGGTCCAATCAATTTACTAGTTGTTGAGGATATTCATATTGTACTGTCGTTTCAATTATTGTATTTTCATTTCTTTTAGTCTTATCGTTTATGTTGTATGAAGAATTTTGTTGCTTCTCTTTTACCTCTTAACACACACACACACACTCAGACACATTTTTAGTATAATAATTCATGCGGCATAAAACTATTTGTATTATGCAATATTTCCTAACCCTTGTTATCTATCTTGAGTTTATATTGTTTTCTTAAGTTTTTAAATATCTATCGCATTGCATTTACTATGTTGAAATCGAGGAGTTTGACTCTCACGATCAGAGAGTGGGTGACGTGTAAGGATTATGCTAAATGCACACAATTTCCTTATTTTACCTTCATTTTTATTTTGTTTCTATTTTAACGACATGATTCTTAGACTTAAGAGTTAAAGTTCTTAGTTTTAATACTATTCTCATTTTGTTTGTAGATTTTAAAGAGTTGAAGATAACAACAATCATTGAGACTTTGAGTTTGGAGTTATCTAAGAGTTCTTTTAATTGGGTAACTCTCTCCCTTGTTTCTTCATTGATTAGTTATGATTTAATGGGTCTGGTAGTGATTTAGTATGCTACAAGATGAATACATATCTGTTCTAAGTTTGCTCTAATTGATTGCTTATTTTTAACTTGACGTTGTTATATTTTTGTTTAGGTTGTGGAATCCAAGTTTGTATTTGAAGCCAAGTTCATACAAGGTCATTGAGTTTCAAGCTTCTTTAATTAAGTTTGTGTTTCTTGAACTAAAATTGTAATGACCAACTATATGTATGTTGAATATATACGCAATTTGTTAGTTCTTTGATTGAAAGTTGGGTTGATTCAAGAAACTTAAATAGT

mRNA sequence

CTTTGTTATTGCCCCTTTTCCAAAGTTATGGTAGTTTTCTTGATTTTGAGTCATTTTGCAAAAAATAAGTGTTCAAAGGTTTTACTGAGGAATGGCACGGGTAACTAGAATTTGTGAGGAACATTATGATTTTATTTTGTTTTTCTCCTTTCTGAGAACAATTGAAATTCTTACATGCTTGACACTCTCAGAAGTTTTTGTTCTGATCTTTTTATGAAAGAAATGCCTAAGTTATCCAGAAAAGAGGAAGAAAGCAGAAGATGAGAACAGTTTGGCACGATATGATTGGTCTCCATTGTCCAATTTTTGGCGTCAATCGTGAGGTTTTAGTTCCTATACCCAAACCGGTCGGCTACACAGGAGCTGATCCCTGTAAAATGTATTTTAAAGAGTTGAAGATAACAACAATCATTGAGACTTTGAGTTTGGAGTTATCTAAGAGTTCTTTTAATTGGGTTGTGGAATCCAAGTTTGTATTTGAAGCCAAGTTCATACAAGGTCATTGAGTTTCAAGCTTCTTTAATTAAGTTTGTGTTTCTTGAACTAAAATTGTAATGACCAACTATATGTATGTTGAATATATACGCAATTTGTTAGTTCTTTGATTGAAAGTTGGGTTGATTCAAGAAACTTAAATAGT

Coding sequence (CDS)

ATGATTGGTCTCCATTGTCCAATTTTTGGCGTCAATCGTGAGGTTTTAGTTCCTATACCCAAACCGGTCGGCTACACAGGAGCTGATCCCTGTAAAATGTATTTTAAAGAGTTGAAGATAACAACAATCATTGAGACTTTGAGTTTGGAGTTATCTAAGAGTTCTTTTAATTGGGTTGTGGAATCCAAGTTTGTATTTGAAGCCAAGTTCATACAAGGTCATTGA

Protein sequence

MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSSFNWVVESKFVFEAKFIQGH

Homology

[Close]

BLAST of Cmc04g0095641 vs. NCBI nr
Match: XP_023541018.1 (uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo] >KAG7027866.1 hypothetical protein SDJN02_09043 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. NCBI nr
Match: PSS17686.1 (30S ribosomal protein, partial [Actinidia chinensis var. chinensis])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVL+PIPKP GYTGADP KM F+  +   +I  L +   KSS
Sbjct: 55  MIGRHCPIFGVNREVLIPIPKPTGYTGADPYKMSFQVGREKFLIPWLFVINRKSS 109

[Close]

BLAST of Cmc04g0095641 vs. NCBI nr
Match: KAG6596313.1 (hypothetical protein SDJN03_09493, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. NCBI nr
Match: XP_008442332.1 (PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo] >KAA0044220.1 uncharacterized protein E6C27_scaffold236G005800 [Cucumis melo var. makuwa] >TYK24915.1 uncharacterized protein E5676_scaffold352G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. NCBI nr
Match: XP_008442331.1 (PREDICTED: uncharacterized protein LOC103486235 isoform X1 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. ExPASy TrEMBL
Match: A0A5A7TLX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00290 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. ExPASy TrEMBL
Match: A0A6J1I3H9 (uncharacterized protein LOC111470204 OS=Cucurbita maxima OX=3661 GN=LOC111470204 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. ExPASy TrEMBL
Match: A0A2R6QZ81 (30S ribosomal protein (Fragment) OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc00076 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVL+PIPKP GYTGADP KM F+  +   +I  L +   KSS
Sbjct: 55  MIGRHCPIFGVNREVLIPIPKPTGYTGADPYKMSFQVGREKFLIPWLFVINRKSS 109

[Close]

BLAST of Cmc04g0095641 vs. ExPASy TrEMBL
Match: A0A6J1EYS2 (uncharacterized protein LOC111440559 OS=Cucurbita moschata OX=3662 GN=LOC111440559 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. ExPASy TrEMBL
Match: A0A1S3B5G0 (uncharacterized protein LOC103486235 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486235 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           MIG HCPIFGVNREVLVPIPKPVGYTGADP K+ F+  K   ++  L +   KS+
Sbjct: 47  MIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA 101

[Close]

BLAST of Cmc04g0095641 vs. TAIR 10
Match: AT3G51610.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1   MIGLHCPIFGVNREVLVPIPKPVGYTGADPCKMYFKELKITTIIETLSLELSKSS 56
           +IG HCPIF VNREVL+PI KP+GYTG DP K+ F+      +I  L +   KSS
Sbjct: 58  VIGKHCPIFAVNREVLIPIAKPIGYTGTDPYKIKFQVGSEKFLIHWLLVINRKSS 112

The following BLAST results are available for this feature:

BLAST of Cmc04g0095641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541018.1	3.1e-09	63.64	uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo] >KAG7027866.1 ...	[more]
PSS17686.1	3.1e-09	63.64	30S ribosomal protein, partial [Actinidia chinensis var. chinensis]	[more]
KAG6596313.1	3.1e-09	63.64	hypothetical protein SDJN03_09493, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008442332.1	3.1e-09	63.64	PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_008442331.1	3.1e-09	63.64	PREDICTED: uncharacterized protein LOC103486235 isoform X1 [Cucumis melo]	[more]

BLAST of Cmc04g0095641 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0095641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLX6	1.5e-09	63.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1I3H9	1.5e-09	63.64	uncharacterized protein LOC111470204 OS=Cucurbita maxima OX=3661 GN=LOC111470204...	[more]
A0A2R6QZ81	1.5e-09	63.64	30S ribosomal protein (Fragment) OS=Actinidia chinensis var. chinensis OX=159084...	[more]
A0A6J1EYS2	1.5e-09	63.64	uncharacterized protein LOC111440559 OS=Cucurbita moschata OX=3662 GN=LOC1114405...	[more]
A0A1S3B5G0	1.5e-09	63.64	uncharacterized protein LOC103486235 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cmc04g0095641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51610.1	1.8e-10	54.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36768	ATP-DEPENDENT HELICASE/DEOXYRIBONUCLEASE SUBUNIT B	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095641.1	Cmc04g0095641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009555	pollen development
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005886	plasma membrane