Cmc04g0095591 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095591
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 9217007 .. 9217348 (+)
RNA-Seq Expression	Cmc04g0095591
Synteny	Cmc04g0095591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTGGTTTGACTAATGCCCTTGCGATATTCATGGACTTGATGAACAAAGAGTTTAAGGATTTCTTAGACTCGTTTGTCATAGTTTTTATTGACGACATTTTGATTTACTCCAAAACTGAGGCTGAGCATGAGGAGCACTTGCACCACGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGATGACTTTCCTCGGCCACGTGGTTTCCAATGAGGGAGTTGTTGTGGACCCAGCAAAGATCGAAGCGGTTACCAATTAG

mRNA sequence

ATGGCTTTTCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTGGTTTGACTAATGCCCTTGCGATATTCATGGACTTGATGAACAAAGAGTTTAAGGATTTCTTAGACTCGTTTGTCATAGTTTTTATTGACGACATTTTGATTTACTCCAAAACTGAGGCTGAGCATGAGGAGCACTTGCACCACGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGATGACTTTCCTCGGCCACGTGGTTTCCAATGAGGGAGTTGTTGTGGACCCAGCAAAGATCGAAGCGGTTACCAATTAG

Coding sequence (CDS)

ATGGCTTTTCGTTCCAGATACGGGCACTACGAGTTCATCGTGATGTCCTTTGGTTTGACTAATGCCCTTGCGATATTCATGGACTTGATGAACAAAGAGTTTAAGGATTTCTTAGACTCGTTTGTCATAGTTTTTATTGACGACATTTTGATTTACTCCAAAACTGAGGCTGAGCATGAGGAGCACTTGCACCACGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGATGACTTTCCTCGGCCACGTGGTTTCCAATGAGGGAGTTGTTGTGGACCCAGCAAAGATCGAAGCGGTTACCAATTAG

Protein sequence

MAFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN

Homology

[Close]

BLAST of Cmc04g0095591 vs. NCBI nr
Match: KAA0066101.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEFIVMSFGLTNALA+FMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 700 AFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEE 759

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VLETLRANKLY KFSKCEFWLKK+TFLGHVVS++GV VDPAKIEAVTN
Sbjct: 760 HLHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTN 811

[Close]

BLAST of Cmc04g0095591 vs. NCBI nr
Match: KAA0050727.1 (pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEFIVMSFGLTNALA+FMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 175 AFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEE 234

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VL TLRANKLY KFSKCEFWLKK+TFLGHVVS+EGV VDPAKIEAVTN
Sbjct: 235 HLHQVLVTLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTN 286

[Close]

BLAST of Cmc04g0095591 vs. NCBI nr
Match: KAA0038896.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 5.6e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEF+VMSFGLTNA A+FMDLMNK FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 634 AFRSRYGHYEFVVMSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEE 693

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VLETLRANKLY KFSKCEFWL+K+TFLGHVVS+EGV VDPAKIEAVTN
Sbjct: 694 HLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 745

[Close]

BLAST of Cmc04g0095591 vs. NCBI nr
Match: KAA0039213.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 9.6e-50
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEFIVMSFGLTNA A+FMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEH+E
Sbjct: 238 AFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHKE 297

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VLETLRANKLYVKFSKCEFWL+K+TFLGHVVS+EGV VDPAKIEAVTN
Sbjct: 298 HLHQVLETLRANKLYVKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 349

[Close]

BLAST of Cmc04g0095591 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 2    AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
            AFRSRYGHYEF+VMSFGLTNA A+FMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 1036 AFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEE 1095

Query: 62   HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
            HLH VLETLRANKLY KFSKCEFWL+K+TFLGHVVS+EGV VDPAKIEAVTN
Sbjct: 1096 HLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 1147

[Close]

BLAST of Cmc04g0095591 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AF +++GHYE++ M FGL NA A F   MN   +  L+   +V++DDI+++S +  EH +
Sbjct: 321 AFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQ 380

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAV 112
            L  V E L    L ++  KCEF  ++ TFLGHV++ +G+  +P KIEA+
Sbjct: 381 SLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAI 430

[Close]

BLAST of Cmc04g0095591 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-16
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AF ++ GHYE++ M FGL NA A F   MN   +  L+   +V++DDI+I+S +  EH  
Sbjct: 320 AFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLN 379

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
            +  V   L    L ++  KCEF  K+  FLGH+V+ +G+  +P K++A+ +
Sbjct: 380 SIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVS 431

[Close]

BLAST of Cmc04g0095591 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 39/111 (35.14%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 1   MAFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHE 60
           +AFR   G +E++VM +G++ A A F   +N    +  +S V+ ++DDILI+SK+E+EH 
Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579

Query: 61  EHLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAV 112
           +H+  VL+ L+   L +  +KCEF   ++ F+G+ +S +G       I+ V
Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0095591 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 39/111 (35.14%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 1   MAFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHE 60
           +AFR   G +E++VM +G++ A A F   +N    +  +S V+ ++DDILI+SK+E+EH 
Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579

Query: 61  EHLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAV 112
           +H+  VL+ L+   L +  +KCEF   ++ F+G+ +S +G       I+ V
Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0095591 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 39/111 (35.14%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 1   MAFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHE 60
           +AFR   G +E++VM +G++ A A F   +N    +  +S V+ ++DDILI+SK+E+EH 
Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579

Query: 61  EHLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAV 112
           +H+  VL+ L+   L +  +KCEF   ++ F+G+ +S +G       I+ V
Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKV 630

[Close]

BLAST of Cmc04g0095591 vs. ExPASy TrEMBL
Match: A0A5A7VK60 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.1e-51
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEFIVMSFGLTNALA+FMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 700 AFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEE 759

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VLETLRANKLY KFSKCEFWLKK+TFLGHVVS++GV VDPAKIEAVTN
Sbjct: 760 HLHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTN 811

[Close]

BLAST of Cmc04g0095591 vs. ExPASy TrEMBL
Match: A0A5D3B768 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEFIVMSFGLTNALA+FMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 175 AFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEE 234

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VL TLRANKLY KFSKCEFWLKK+TFLGHVVS+EGV VDPAKIEAVTN
Sbjct: 235 HLHQVLVTLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTN 286

[Close]

BLAST of Cmc04g0095591 vs. ExPASy TrEMBL
Match: A0A5A7T9X0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00640 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEF+VMSFGLTNA A+FMDLMNK FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 634 AFRSRYGHYEFVVMSFGLTNAPAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKTEAEHEE 693

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VLETLRANKLY KFSKCEFWL+K+TFLGHVVS+EGV VDPAKIEAVTN
Sbjct: 694 HLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 745

[Close]

BLAST of Cmc04g0095591 vs. ExPASy TrEMBL
Match: A0A5A7T8B1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G001330 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.6e-50
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRYGHYEFIVMSFGLTNA A+FMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEH+E
Sbjct: 238 AFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHKE 297

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VLETLRANKLYVKFSKCEFWL+K+TFLGHVVS+EGV VDPAKIEAVTN
Sbjct: 298 HLHQVLETLRANKLYVKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTN 349

[Close]

BLAST of Cmc04g0095591 vs. ExPASy TrEMBL
Match: A0A5A7SUC9 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2137G00260 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.0e-50
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 2   AFRSRYGHYEFIVMSFGLTNALAIFMDLMNKEFKDFLDSFVIVFIDDILIYSKTEAEHEE 61
           AFRSRY HYEFIVMSFGLTNALAIFMDLMN+ FKDFLDSFVIVFIDDILIYSKTEAEHEE
Sbjct: 175 AFRSRYEHYEFIVMSFGLTNALAIFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEE 234

Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLGHVVSNEGVVVDPAKIEAVTN 114
           HLH VLETLRAN+LYVKFSKCEFWLKK++FLGHVVS+EGV VDPAKIEA+TN
Sbjct: 235 HLHQVLETLRANRLYVKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAITN 286

[Close]

BLAST of Cmc04g0095591 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 62  HLHHVLETLRANKLYVKFSKCEFWLKKMTFLG--HVVSNEGVVVDPAKIEAV 112
           HL  VL+    ++ Y    KC F   ++ +LG  H++S EGV  DPAK+EA+
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAM 54

The following BLAST results are available for this feature:

BLAST of Cmc04g0095591 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066101.1	1.5e-50	91.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0050727.1	4.3e-50	91.96	pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var...	[more]
KAA0038896.1	5.6e-50	91.07	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0039213.1	9.6e-50	91.07	pol protein [Cucumis melo var. makuwa]	[more]
TYK20443.1	1.2e-49	90.18	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0095591 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.7e-17	40.91	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.2e-16	37.50	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	4.4e-13	35.14	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.4e-13	35.14	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.4e-13	35.14	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0095591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VK60	7.1e-51	91.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5D3B768	2.1e-50	91.96	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE...	[more]
A0A5A7T9X0	2.7e-50	91.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7T8B1	4.6e-50	91.07	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G001330 P...	[more]
A0A5A7SUC9	6.0e-50	91.07	Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Cmc04g0095591 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.2e-04	40.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..21 e-value: 1.1E-34 score: 121.6
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..113
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..113
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..96 e-value: 3.30652E-32 score: 109.222
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 6..95 e-value: 6.4E-17 score: 61.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 22..96 e-value: 1.1E-34 score: 121.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095591.1	Cmc04g0095591.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding