Cmc04g0095511 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095511
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 9057802 .. 9058852 (+)
RNA-Seq Expression	Cmc04g0095511
Synteny	Cmc04g0095511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCCTTTGCATTGACTATAGGGAGGTGAACAAGGTGAGAGTCAAGAACCGCTACCCCTTGCCAAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACCGTCGTTTCTAAGATCGACCTGCGATCAGGTTATCACCAGTTGAAGATCAGGGATAATGATATTCCTAAGACCGCTTTTTGTTCTAGATACGGGCATTACGAGTTGATCGTGATGTCTTTTGGCTTGACTAATGCTACTGCGATGTTCATGAACTTGATGAACATGGTGTTTAAGGACTTCTTTGACACGTTTGTTATAGTTTTCATTGATGACATTTTGATTTACTCCGAGACTGAGACTAAGCATGAGGCATCTGCATCAAGTTTTGGAGACTCTTTAAACTAATAAGTTGTATGCCAAGTTTTCCAAGTGTGAGTTCTGGCTGAAGAAGGTATCTTTTCTTGGACATGTGGTGTCTAGTGAGGAAGTTTCTGTAGACCCAGTAAAGATTGAAGCTGGTACTAGTTGGCCTCCACCGTCTATAGTCAGTGAGATCCATAGCTTTCTGGGTCTAGCAGGTTACTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCTCTTGACTCAATTGACCAGAAAGGGGACTCTATTTGTTTGGAACCCAGCTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTGGTGTCTGCACCAGTCCTAACAGTACTAGATGGATCTAAAAGTTTTGTGATCTACAGTGATGCCTTAAAGAAAGGACTGAGTTGTGTTCTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGACCTAGAGTTGGCAGCAGTGGTTTTTGCACTGATGATATGGAGGCATTACCTGTGCGGTGAGAAGATATATATTTTCACAGACCATAAGAGCTTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTTGAGTTAGTGAAAGACTATGACTGCGAGGTTTTGTATCACCCAGGTTAG

mRNA sequence

ATGTGCCTTTGCATTGACTATAGGGAGGTGAACAAGGTGAGAGTCAAGAACCGCTACCCCTTGCCAAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACCGTCGTTTCTAAGATCGACCTGCGATCAGGTTATCACCAGTTGAAGATCAGGGATAATGATATTCCTAAGACCGCTTTTTGTTCTAGATACGGGCATTACGAGTTGATCGTGATGTCTTTTGGCTTGACTAATGCTACTGCGATGTTCATGAACTTGATGAACATGGTATCTTTTCTTGGACATGTGGTGTCTAGTGAGGAAGTTTCTGTAGACCCAGTAAAGATTGAAGCTGGTACTAGTTGGCCTCCACCGTCTATAGTCAGTGAGATCCATAGCTTTCTGGGTCTAGCAGGTTACTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCTCTTGACTCAATTGACCAGAAAGGGGACTCTATTTGTTTGGAACCCAGCTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTGGTGTCTGCACCAGTCCTAACAGTACTAGATGGATCTAAAAGTTTTGTGATCTACAGTGATGCCTTAAAGAAAGGACTGAGTTGTGTTCTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGACCTAGAGTTGGCAGCAGTGGTTTTTGCACTGATGATATGGAGGCATTACCTGTGCGGTGAGAAGATATATATTTTCACAGACCATAAGAGCTTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTTGAGTTAGTGAAAGACTATGACTGCGAGGTTTTGTATCACCCAGGTTAG

Coding sequence (CDS)

ATGTGCCTTTGCATTGACTATAGGGAGGTGAACAAGGTGAGAGTCAAGAACCGCTACCCCTTGCCAAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACCGTCGTTTCTAAGATCGACCTGCGATCAGGTTATCACCAGTTGAAGATCAGGGATAATGATATTCCTAAGACCGCTTTTTGTTCTAGATACGGGCATTACGAGTTGATCGTGATGTCTTTTGGCTTGACTAATGCTACTGCGATGTTCATGAACTTGATGAACATGGTATCTTTTCTTGGACATGTGGTGTCTAGTGAGGAAGTTTCTGTAGACCCAGTAAAGATTGAAGCTGGTACTAGTTGGCCTCCACCGTCTATAGTCAGTGAGATCCATAGCTTTCTGGGTCTAGCAGGTTACTATAGGAGGTTCGTGGAAGACTTTTCTCGTATAGCTAGTCTCTTGACTCAATTGACCAGAAAGGGGACTCTATTTGTTTGGAACCCAGCTTGTGAGTCTAGTTTCCAAGAGCTCAAGCAGAAGCTGGTGTCTGCACCAGTCCTAACAGTACTAGATGGATCTAAAAGTTTTGTGATCTACAGTGATGCCTTAAAGAAAGGACTGAGTTGTGTTCTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGACCTAGAGTTGGCAGCAGTGGTTTTTGCACTGATGATATGGAGGCATTACCTGTGCGGTGAGAAGATATATATTTTCACAGACCATAAGAGCTTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTTGAGTTAGTGAAAGACTATGACTGCGAGGTTTTGTATCACCCAGGTTAG

Protein sequence

MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFCSRYGHYELIVMSFGLTNATAMFMNLMNMVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTVLDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIWRHYLCGEKIYIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEVLYHPG

Homology

[Close]

BLAST of Cmc04g0095511 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 500.0 bits (1286), Expect = 1.4e-137
Identity = 258/350 (73.71%), Postives = 270/350 (77.14%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           MCLCIDYRE+NKV VKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQL+IRD DIPKT 
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           F SRYGHYE +VMSFGLTNA A+FM+LMN                               
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                     V+FLGHVVSSE VSVDP KIEA T+WP PS VSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVEDFSRIAS LTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV
Sbjct: 790 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 849

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS +FVIYSDA KKGL CVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFAL IW
Sbjct: 850 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 909

[Close]

BLAST of Cmc04g0095511 vs. NCBI nr
Match: TYK12237.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 498.0 bits (1281), Expect = 5.4e-137
Identity = 258/350 (73.71%), Postives = 271/350 (77.43%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           M LCIDYRE+NKV VKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQL+IRD++IPKTA
Sbjct: 501 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSNIPKTA 560

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           FCSRYGHYE IVMSFGLTNA A+FM+LMN                               
Sbjct: 561 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEKH 620

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                    MV+FLGHVVSSE VS+DP KIEA  +WP PS VSE
Sbjct: 621 LHQVLETLRANKLYAKFSKCEFWLKMVTFLGHVVSSEGVSMDPAKIEAVINWPRPSTVSE 680

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVEDFSRIAS LTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV
Sbjct: 681 IQSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 740

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS SFVIYSDA KKGL CVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL IW
Sbjct: 741 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 800

[Close]

BLAST of Cmc04g0095511 vs. NCBI nr
Match: KAA0051925.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 498.0 bits (1281), Expect = 5.4e-137
Identity = 258/350 (73.71%), Postives = 271/350 (77.43%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           M LCIDYRE+NKV VKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQL+IRD++IPKTA
Sbjct: 501 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSNIPKTA 560

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           FCSRYGHYE IVMSFGLTNA A+FM+LMN                               
Sbjct: 561 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEKH 620

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                    MV+FLGHVVSSE VS+DP KIEA  +WP PS VSE
Sbjct: 621 LHQVLETLRANKLYAKFSKCEFWLKMVTFLGHVVSSEGVSMDPAKIEAVINWPRPSTVSE 680

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVEDFSRIAS LTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV
Sbjct: 681 IQSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 740

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS SFVIYSDA KKGL CVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL IW
Sbjct: 741 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 800

[Close]

BLAST of Cmc04g0095511 vs. NCBI nr
Match: KAA0037906.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 496.1 bits (1276), Expect = 2.1e-136
Identity = 255/350 (72.86%), Postives = 270/350 (77.14%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           M LCIDYRE+NKV VKNRYPLP+IDDLFDQLQGATV SKIDLRSGYHQL+IRD DIPKTA
Sbjct: 598 MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 657

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           FCSRYGHYE +VMSFGLTNA A+FM+LMN                               
Sbjct: 658 FCSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 717

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                     V+FLGHVVSSE VSVDP KIEA T+WP PS VSE
Sbjct: 718 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 777

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVE FSRIASLLTQLTRKGT FVW+PACE SFQELKQKL++APVLTV
Sbjct: 778 IRSFLGLAGYYRRFVEGFSRIASLLTQLTRKGTPFVWSPACECSFQELKQKLMTAPVLTV 837

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS +FVIYSDA KKGL CVLMQQGKVVAYASRQLK+HEQNYPTHDLELAAVVFAL IW
Sbjct: 838 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIW 897

[Close]

BLAST of Cmc04g0095511 vs. NCBI nr
Match: KAA0039594.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 495.7 bits (1275), Expect = 2.7e-136
Identity = 256/348 (73.56%), Postives = 271/348 (77.87%), Query Frame = 0


Query: 3   LCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFC 62
           LCIDYR++NKV VKNRYPLPRIDDLFDQLQG+TV SKIDLRSGYHQL+IRD+DIPKTAF 
Sbjct: 530 LCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGSTVFSKIDLRSGYHQLRIRDSDIPKTAFR 589

Query: 63  SRYGHYELIVMSFGLTNATAMFMNLMN--------------------------------- 122
           SRYGHYE IVMSFGLTNA  +FM+LMN                                 
Sbjct: 590 SRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 649

Query: 123 -----------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIH 182
                                   V+FLGHVVSSE VSV+P KIEA T+WP PS VSEI 
Sbjct: 650 QVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWPRPSTVSEIR 709

Query: 183 SFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTVLD 242
           SFLGLAGYYRRFVEDFSRIASLLTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV D
Sbjct: 710 SFLGLAGYYRRFVEDFSRIASLLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPD 769

Query: 243 GSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIWRH 295
           GS SFVIY+DA KKGL CVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL IWRH
Sbjct: 770 GSGSFVIYNDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRH 829

[Close]

BLAST of Cmc04g0095511 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 6.1e-51
Identity = 112/349 (32.09%), Postives = 178/349 (51.00%), Query Frame = 0


Query: 3   LCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFC 62
           + IDYR++N++ V +R+P+P +D++  +L      + IDL  G+HQ+++    + KTAF 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  SRYGHYELIVMSFGLTNATAMFMNLMNMV------------------------------- 122
           +++GHYE + M FGL NA A F   MN +                               
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 123 -------------------------SFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIH 182
                                    +FLGHV++ + +  +P KIEA   +P P+   EI 
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 183 SFLGLAGYYRRFVEDFSRIASLLTQLTRKG-TLFVWNPACESSFQELKQKLVSAPVLTVL 242
           +FLGL GYYR+F+ +F+ IA  +T+  +K   +   NP  +S+F++LK  +   P+L V 
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503

Query: 243 DGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIWR 295
           D +K F + +DA    L  VL Q G  ++Y SR L  HE NY T + EL A+V+A   +R
Sbjct: 504 DFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFR 563

[Close]

BLAST of Cmc04g0095511 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-48
Identity = 107/347 (30.84%), Postives = 174/347 (50.14%), Query Frame = 0


Query: 5   IDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFCSR 64
           IDYR++N++ + +RYP+P +D++  +L      + IDL  G+HQ+++ +  I KTAF ++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YGHYELIVMSFGLTNATAMFMNLMNMV--------------------------------- 124
            GHYE + M FGL NA A F   MN +                                 
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 -----------------------SFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIHSF 184
                                  +FLGH+V+ + +  +P+K++A  S+P P+   EI +F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 185 LGLAGYYRRFVEDFSRIASLLTQLTRKGT-LFVWNPACESSFQELKQKLVSAPVLTVLDG 244
           LGL GYYR+F+ +++ IA  +T   +K T +         +F++LK  ++  P+L + D 
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDF 504

Query: 245 SKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIWRHY 295
            K FV+ +DA    L  VL Q G  +++ SR L  HE NY   + EL A+V+A   +RHY
Sbjct: 505 EKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHY 564

[Close]

BLAST of Cmc04g0095511 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-44
Identity = 104/364 (28.57%), Postives = 177/364 (48.63%), Query Frame = 0


Query: 3   LCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFC 62
           + +D++ +N V + + YP+P I+     L  A   + +DL SG+HQ+ ++++DIPKTAF 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 63  SRYGHYELIVMSFGLTNATAMFMNLMN--------------------------------- 122
           +  G YE + + FGL NA A+F  +++                                 
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 123 -----------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIH 182
                                   V FLG++V+++ +  DP K+ A +  PPP+ V E+ 
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 183 SFLGLAGYYRRFVEDFSRIASLLTQLTR-----------KGTLFVWNPACESSFQELKQK 242
            FLG+  YYR+F++D++++A  LT LTR                  +     SF +LK  
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSI 419

Query: 243 LVSAPVLTVLDGSKSFVIYSDALKKGLSCVLMQ----QGKVVAYASRQLKSHEQNYPTHD 295
           L S+ +L     +K F + +DA    +  VL Q    + + +AY SR L   E+NY T +
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIE 479

[Close]

BLAST of Cmc04g0095511 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.1e-42
Identity = 109/361 (30.19%), Postives = 172/361 (47.65%), Query Frame = 0


Query: 3   LCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFC 62
           L ID+R++N+  + +RYP+P I  +   L  A   + +DL+SGYHQ+ + ++D  KT+F 
Sbjct: 239 LVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFS 298

Query: 63  SRYGHYELIVMSFGLTNATAMFMNLMN--------------------------------- 122
              G YE   + FGL NA+++F   ++                                 
Sbjct: 299 VNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHID 358

Query: 123 -----------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIH 182
                                   V +LG +VS +    DP K++A   +P P  V ++ 
Sbjct: 359 TVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVR 418

Query: 183 SFLGLAGYYRRFVEDFSRIASLLTQLTR-----------KGTLFVWNPACESSFQELKQK 242
           SFLGLA YYR F++DF+ IA  +T + +           K     +N    ++FQ L+  
Sbjct: 419 SFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNI 478

Query: 243 LVSAPV-LTVLDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLEL 295
           L S  V L   D  K F + +DA   G+  VL Q+G+ +   SR LK  EQNY T++ EL
Sbjct: 479 LASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNEREL 538

[Close]

BLAST of Cmc04g0095511 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-38
Identity = 105/357 (29.41%), Postives = 165/357 (46.22%), Query Frame = 0


Query: 3    LCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFC 62
            LC+DYR +NK  + + +PLPRID+L  ++  A + + +DL SGYHQ+ +   D  KTAF 
Sbjct: 674  LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63   SRYGHYELIVMSFGLTNATAMFMNLM---------------------------------- 122
            +  G YE  VM FGL NA + F   M                                  
Sbjct: 734  TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTV 793

Query: 123  -------NMV-------------SFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIHSF 182
                   N++              FLG+ +  ++++    K  A   +P P  V +   F
Sbjct: 794  LERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRF 853

Query: 183  LGLAGYYRRFVEDFSRIASLLTQLTRKGTLFV-----WNPACESSFQELKQKLVSAPVLT 242
            LG+  YYRRF+ + S+IA  +        LF+     W    + + ++LK  L ++PVL 
Sbjct: 854  LGMINYYRRFIPNCSKIAQPI-------QLFICDKSQWTEKQDKAIEKLKAALCNSPVLV 913

Query: 243  VLDGSKSFVIYSDALKKGLSCVLMQQGK------VVAYASRQLKSHEQNYPTHDLELAAV 295
              +   ++ + +DA K G+  VL +         VV Y S+ L+S ++NYP  +LEL  +
Sbjct: 914  PFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGI 973

[Close]

BLAST of Cmc04g0095511 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 6.9e-138
Identity = 258/350 (73.71%), Postives = 270/350 (77.14%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           MCLCIDYRE+NKV VKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQL+IRD DIPKT 
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           F SRYGHYE +VMSFGLTNA A+FM+LMN                               
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                     V+FLGHVVSSE VSVDP KIEA T+WP PS VSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVEDFSRIAS LTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV
Sbjct: 790 IRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 849

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS +FVIYSDA KKGL CVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFAL IW
Sbjct: 850 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIW 909

[Close]

BLAST of Cmc04g0095511 vs. ExPASy TrEMBL
Match: A0A5A7UDZ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003790 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.6e-137
Identity = 258/350 (73.71%), Postives = 271/350 (77.43%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           M LCIDYRE+NKV VKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQL+IRD++IPKTA
Sbjct: 501 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSNIPKTA 560

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           FCSRYGHYE IVMSFGLTNA A+FM+LMN                               
Sbjct: 561 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEKH 620

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                    MV+FLGHVVSSE VS+DP KIEA  +WP PS VSE
Sbjct: 621 LHQVLETLRANKLYAKFSKCEFWLKMVTFLGHVVSSEGVSMDPAKIEAVINWPRPSTVSE 680

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVEDFSRIAS LTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV
Sbjct: 681 IQSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 740

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS SFVIYSDA KKGL CVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL IW
Sbjct: 741 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 800

[Close]

BLAST of Cmc04g0095511 vs. ExPASy TrEMBL
Match: A0A5D3CJW2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00440 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.6e-137
Identity = 258/350 (73.71%), Postives = 271/350 (77.43%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           M LCIDYRE+NKV VKNRYPLPRIDDLFDQLQGATV SKIDLRSGYHQL+IRD++IPKTA
Sbjct: 501 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSNIPKTA 560

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           FCSRYGHYE IVMSFGLTNA A+FM+LMN                               
Sbjct: 561 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEKH 620

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                    MV+FLGHVVSSE VS+DP KIEA  +WP PS VSE
Sbjct: 621 LHQVLETLRANKLYAKFSKCEFWLKMVTFLGHVVSSEGVSMDPAKIEAVINWPRPSTVSE 680

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVEDFSRIAS LTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV
Sbjct: 681 IQSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTV 740

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS SFVIYSDA KKGL CVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL IW
Sbjct: 741 PDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 800

[Close]

BLAST of Cmc04g0095511 vs. ExPASy TrEMBL
Match: A0A5A7T6U3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00780 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 9.9e-137
Identity = 255/350 (72.86%), Postives = 270/350 (77.14%), Query Frame = 0


Query: 1   MCLCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTA 60
           M LCIDYRE+NKV VKNRYPLP+IDDLFDQLQGATV SKIDLRSGYHQL+IRD DIPKTA
Sbjct: 598 MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 657

Query: 61  FCSRYGHYELIVMSFGLTNATAMFMNLMN------------------------------- 120
           FCSRYGHYE +VMSFGLTNA A+FM+LMN                               
Sbjct: 658 FCSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 717

Query: 121 -------------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSE 180
                                     V+FLGHVVSSE VSVDP KIEA T+WP PS VSE
Sbjct: 718 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 777

Query: 181 IHSFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTV 240
           I SFLGLAGYYRRFVE FSRIASLLTQLTRKGT FVW+PACE SFQELKQKL++APVLTV
Sbjct: 778 IRSFLGLAGYYRRFVEGFSRIASLLTQLTRKGTPFVWSPACECSFQELKQKLMTAPVLTV 837

Query: 241 LDGSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIW 295
            DGS +FVIYSDA KKGL CVLMQQGKVVAYASRQLK+HEQNYPTHDLELAAVVFAL IW
Sbjct: 838 PDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIW 897

[Close]

BLAST of Cmc04g0095511 vs. ExPASy TrEMBL
Match: A0A5A7T804 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00700 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.3e-136
Identity = 256/348 (73.56%), Postives = 271/348 (77.87%), Query Frame = 0


Query: 3   LCIDYREVNKVRVKNRYPLPRIDDLFDQLQGATVVSKIDLRSGYHQLKIRDNDIPKTAFC 62
           LCIDYR++NKV VKNRYPLPRIDDLFDQLQG+TV SKIDLRSGYHQL+IRD+DIPKTAF 
Sbjct: 530 LCIDYRKLNKVTVKNRYPLPRIDDLFDQLQGSTVFSKIDLRSGYHQLRIRDSDIPKTAFR 589

Query: 63  SRYGHYELIVMSFGLTNATAMFMNLMN--------------------------------- 122
           SRYGHYE IVMSFGLTNA  +FM+LMN                                 
Sbjct: 590 SRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLH 649

Query: 123 -----------------------MVSFLGHVVSSEEVSVDPVKIEAGTSWPPPSIVSEIH 182
                                   V+FLGHVVSSE VSV+P KIEA T+WP PS VSEI 
Sbjct: 650 QVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWPRPSTVSEIR 709

Query: 183 SFLGLAGYYRRFVEDFSRIASLLTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTVLD 242
           SFLGLAGYYRRFVEDFSRIASLLTQLTRKGT FVW+PACESSFQELKQKLV+APVLTV D
Sbjct: 710 SFLGLAGYYRRFVEDFSRIASLLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPD 769

Query: 243 GSKSFVIYSDALKKGLSCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALMIWRH 295
           GS SFVIY+DA KKGL CVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL IWRH
Sbjct: 770 GSGSFVIYNDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRH 829

[Close]

BLAST of Cmc04g0095511 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 6.0e-17
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 91  VSFLG--HVVSSEEVSVDPVKIEAGTSWPPPSIVSEIHSFLGLAGYYRRFVEDFSRIASL 150
           +++LG  H++S E VS DP K+EA   WP P   +E+  FLGL GYYRRFV+++ +I   
Sbjct: 30  IAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRP 89

Query: 151 LTQLTRKGTLFVWNPACESSFQELKQKLVSAPVLTVLDGSKSFV 193
           LT+L +K +L  W      +F+ LK  + + PVL + D    FV
Sbjct: 90  LTELLKKNSL-KWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc04g0095511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054634.1	1.4e-137	73.71	pol protein [Cucumis melo var. makuwa]	[more]
TYK12237.1	5.4e-137	73.71	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051925.1	5.4e-137	73.71	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037906.1	2.1e-136	72.86	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0039594.1	2.7e-136	73.56	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0095511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	6.1e-51	32.09	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.3e-48	30.84	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.1e-44	28.57	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	3.1e-42	30.19	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q7LHG5	3.5e-38	29.41	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0095511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHL7	6.9e-138	73.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7UDZ3	2.6e-137	73.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5D3CJW2	2.6e-137	73.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76...	[more]
A0A5A7T6U3	9.9e-137	72.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7T804	1.3e-136	73.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]

BLAST of Cmc04g0095511 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.0e-17	41.35	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 187..285 e-value: 1.6E-31 score: 108.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..79 e-value: 9.4E-35 score: 121.8
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 95..293
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 95..293
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 192..294 e-value: 1.21619E-46 score: 151.106
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..91 e-value: 1.20835E-39 score: 135.03
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..94 e-value: 9.4E-35 score: 121.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 110..200 e-value: 4.9E-27 score: 95.8
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095511.1	Cmc04g0095511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding