Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GGAATCGAGATCGACGCCGTATTCTCTCATCCGCTTCGAGGCGACACCAGCGCCGGCTGAAATCTCACCCTCGCTGCTAGAAGTCACTGTCGGGGGCGGTGGTGGTGATGAAGAAGATGCATAGGACCAGGGCACCACCTGGTTTTCTCCGTCCTCATCATCTTCTTCCTCATCGTCATCATCTTCCCCATCATCGTCTTCCTGACTATCACCTCCCTCATAACTATCGAAACCTTCAGCATCGACAAAATCATCACCATCATCAACTTCTACCTCGTTGTCTCTACGACGGTCCTGCTCGCATTTACCATCATGGACTTCAACACATCCCTCACACACAGAAACCGTGGGTGTAA mRNA sequence GGAATCGAGATCGACGCCGTATTCTCTCATCCGCTTCGAGGCGACACCAGCGCCGGCTGAAATCTCACCCTCGCTGCTAGAAGTCACTGTCGGGGGCGGTGGTGGTGATGAAGAAGATGCATAGGACCAGGGCACCACCTGGTTTTCTCCGTCCTCATCATCTTCTTCCTCATCGTCATCATCTTCCCCATCATCGTCTTCCTGACTATCACCTCCCTCATAACTATCGAAACCTTCAGCATCGACAAAATCATCACCATCATCAACTTCTACCTCGTTGTCTCTACGACGGTCCTGCTCGCATTTACCATCATGGACTTCAACACATCCCTCACACACAGAAACCGTGGGTGTAA Coding sequence (CDS) ATGAAGAAGATGCATAGGACCAGGGCACCACCTGGTTTTCTCCGTCCTCATCATCTTCTTCCTCATCGTCATCATCTTCCCCATCATCGTCTTCCTGACTATCACCTCCCTCATAACTATCGAAACCTTCAGCATCGACAAAATCATCACCATCATCAACTTCTACCTCGTTGTCTCTACGACGGTCCTGCTCGCATTTACCATCATGGACTTCAACACATCCCTCACACACAGAAACCGTGGGTGTAA Protein sequence MKKMHRTRAPPGFLRPHHLLPHRHHLPHHRLPDYHLPHNYRNLQHRQNHHHHQLLPRCLYDGPARIYHHGLQHIPHTQKPWV
Homology
BLAST of Cmc04g0095441 vs. ExPASy TrEMBL
Match: A0A673WDD2 (Transcription factor 7-like 2 OS=Salmo trutta OX=8032 GN=LOC115148559 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04 Identity = 34/79 (43.04%), Postives = 42/79 (53.16%), Query Frame = 0
Query: 4 MHRTRAPPGFLRPH-HLLPHRHHLPHHRLPDYHLPHNYRNLQHRQNHHHHQLLPRCLYDG 63
+H PP PH HL H HHLPHH LP YHLPH++ + + HHHH +P
Sbjct: 315 LHHHHHPPHHHLPHYHLHHHHHHLPHHHLPHYHLPHHHHHPHYHLPHHHHLHVPH----- 374
Query: 64 PARIYHHGL-QHIPHTQKP 81
I HH L H+PH + P
Sbjct: 375 DHHIPHHRLPHHLPHHRLP 388
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A673WDD2 | 2.8e-04 | 43.04 | Transcription factor 7-like 2 OS=Salmo trutta OX=8032 GN=LOC115148559 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..26 |
Relationships
The following mRNA feature(s) are a part of this gene:
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