Cmc04g0095101 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095101
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 8247450 .. 8248203 (-)
RNA-Seq Expression	Cmc04g0095101
Synteny	Cmc04g0095101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAATTCCATTTACTCCTCAACAAAATGGTGTAGTTGAGAGGAAGAACCGAACAATACTTTACATGGTTCGAAACATGTTGAAGAGCAAGAAATTGTCAAAAGAATTTTGGGCACAAGTTGTTGAGTGTGCAGTGTACTTGTCAAATCATTCCCCTACTAGAAGCTTATGGAACAAAACTCCTCAACAAGCATGGACAGGAAGAAAACCATCCATTGCTCATTTGAGAGTATTTGGTTGTATGATTTATGCGCATATACCTGATCAAAAGCATTGTAAGCTTGATGATAAAAGTGATAAATATGTTTTCGTTGGCTATGATGCAAGCTCAAAAGGCTACAAGCTTTATAATCCTATTACAAAGAAGATGATGGTAAGCAGAGATGTCGTGTTTGGTAAAGAAGCATCGGGGAATTGGAATGACGAACCAGAAGACTACAAATTTTTGCTTTTTCCCAATGATCATGATGAGCCTAGTGACATTGCTTCTCTATCAACACCACCATCGCCAATCACTCCACAACAAAGCACATCATCATCATCTGCAAGTTCAAGTGAAGGGCCTCGTGGCATGAGAAGCTTACGAGACATATATGATGAAACTGAAGAGTTAAGTCAGTTTTAATAATCTTACTTTTTTTTGTCTATTTGGTGACAGTGAACCTTTGAATTTTGAAGAAGCTTCGCAAAATGACAAATGGAAGATTGCTATGGATGAAGAGATAAGAGCCATAAAAAGGAATGATACATGA

mRNA sequence

ATGACAATTCCATTTACTCCTCAACAAAATGGTGTAGTTGAGAGGAAGAACCGAACAATACTTTACATGGTTCGAAACATGTTGAAGAGCAAGAAATTGTCAAAAGAATTTTGGGCACAAGTTGTTGAGTGTGCAGTGTACTTGTCAAATCATTCCCCTACTAGAAGCTTATGGAACAAAACTCCTCAACAAGCATGGACAGGAAGAAAACCATCCATTGCTCATTTGAGAGTATTTGGTTGTATGATTTATGCGCATATACCTGATCAAAAGCATTGTAAGCTTGATGATAAAAGTGATAAATATGTTTTCGTTGGCTATGATGCAAGCTCAAAAGGCTACAAGCTTTATAATCCTATTACAAAGAAGATGATGGTAAGCAGAGATGTCGTGTTTGGTAAAGAAGCATCGGGGAATTGGAATGACGAACCAGAAGACTACAAATTTTTGCTTTTTCCCAATGATCATGATGAGCCTAGTGACATTGCTTCTCTATCAACACCACCATCGCCAATCACTCCACAACAAAGCACATCATCATCATCTGCAAGTTCAAGTGAAGGGCCTCGTGGCATGAGAAGCTTACGAGACATATATGATGAAACTGAAGAGTTAAGTCATGAACCTTTGAATTTTGAAGAAGCTTCGCAAAATGACAAATGGAAGATTGCTATGGATGAAGAGATAAGAGCCATAAAAAGGAATGATACATGA

Coding sequence (CDS)

ATGACAATTCCATTTACTCCTCAACAAAATGGTGTAGTTGAGAGGAAGAACCGAACAATACTTTACATGGTTCGAAACATGTTGAAGAGCAAGAAATTGTCAAAAGAATTTTGGGCACAAGTTGTTGAGTGTGCAGTGTACTTGTCAAATCATTCCCCTACTAGAAGCTTATGGAACAAAACTCCTCAACAAGCATGGACAGGAAGAAAACCATCCATTGCTCATTTGAGAGTATTTGGTTGTATGATTTATGCGCATATACCTGATCAAAAGCATTGTAAGCTTGATGATAAAAGTGATAAATATGTTTTCGTTGGCTATGATGCAAGCTCAAAAGGCTACAAGCTTTATAATCCTATTACAAAGAAGATGATGGTAAGCAGAGATGTCGTGTTTGGTAAAGAAGCATCGGGGAATTGGAATGACGAACCAGAAGACTACAAATTTTTGCTTTTTCCCAATGATCATGATGAGCCTAGTGACATTGCTTCTCTATCAACACCACCATCGCCAATCACTCCACAACAAAGCACATCATCATCATCTGCAAGTTCAAGTGAAGGGCCTCGTGGCATGAGAAGCTTACGAGACATATATGATGAAACTGAAGAGTTAAGTCATGAACCTTTGAATTTTGAAGAAGCTTCGCAAAATGACAAATGGAAGATTGCTATGGATGAAGAGATAAGAGCCATAAAAAGGAATGATACATGA

Protein sequence

MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNKTPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPITKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSSSSASSSEGPRGMRSLRDIYDETEELSHEPLNFEEASQNDKWKIAMDEEIRAIKRNDT

Homology

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BLAST of Cmc04g0095101 vs. NCBI nr
Match: KAA0036801.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ95869.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 422.2 bits (1084), Expect = 3.0e-114
Identity = 207/223 (92.83%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK
Sbjct: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI
Sbjct: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS
Sbjct: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSHEPLNFEEASQNDKWKI 224
           SSASSSEGPRGMRSLRDIYDETEEL+ +     +  +N+K ++
Sbjct: 181 SSASSSEGPRGMRSLRDIYDETEELTVDVKWVSKIKRNEKGEV 223

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BLAST of Cmc04g0095101 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 4.5e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 726 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 785

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 786 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFADSEPLNFEEASQNDKWKIAMD 845

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BLAST of Cmc04g0095101 vs. NCBI nr
Match: TYK22149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 4.5e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 275 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 334

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 335 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 394

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 395 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 454

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 455 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFADSEPLNFEEASQNDKWKIAMD 514

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BLAST of Cmc04g0095101 vs. NCBI nr
Match: TYK03241.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 4.5e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 503 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 562

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 563 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 622

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 623 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 682

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 683 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFADSEPLNFEEASQNDKWKIAMD 742

[Close]

BLAST of Cmc04g0095101 vs. NCBI nr
Match: KAA0031444.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 408.3 bits (1048), Expect = 4.5e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 726 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 785

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 786 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFGDSEPLNFEEASQNDKWKIAMD 845

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BLAST of Cmc04g0095101 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.2e-34
Identity = 86/216 (39.81%), Postives = 120/216 (55.56%), Query Frame = 0


Query: 2   TIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNKT 61
           T+P TPQ NGV ER NRTI+  VR+ML+  KL K FW + V+ A YL N SP+  L  + 
Sbjct: 574 TVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEI 633

Query: 62  PQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPIT 121
           P++ WT ++ S +HL+VFGC  +AH+P ++  KLDDKS   +F+GY     GY+L++P+ 
Sbjct: 634 PERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVK 693

Query: 122 KKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSSS 181
           KK++ SRDVVF +       D  E  K  + PN    P      ST  +P T  +ST+  
Sbjct: 694 KKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIP------STSNNP-TSAESTTDE 753

Query: 182 SASSSEGPRGMRSLRDIYDETEELSHEPLNFEEASQ 218
            +   E P  +    +  DE  E    P   EE  Q
Sbjct: 754 VSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQ 782

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BLAST of Cmc04g0095101 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-27
Identity = 63/133 (47.37%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSL--W 60
           +T+P TPQ NGV ER  RTI    R M+   KL K FW + V  A YL N  P+R+L   
Sbjct: 573 LTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDS 632

Query: 61  NKTPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYN 120
           +KTP + W  +KP + HLRVFG  +Y HI + K  K DDKS K +FVGY+ +  G+KL++
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKN-KQGKFDDKSFKSIFVGYEPN--GFKLWD 692

Query: 121 PITKKMMVSRDVV 132
            + +K +V+RDVV
Sbjct: 693 AVNEKFIVARDVV 702

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BLAST of Cmc04g0095101 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-17
Identity = 48/129 (37.21%), Postives = 66/129 (51.16%), Query Frame = 0


Query: 4   PFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNKTPQ 63
           P TP+ NG+ ERK+R I+     +L    + K +W      AVYL N  PT  L  ++P 
Sbjct: 616 PHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPF 675

Query: 64  QAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPITKK 123
           Q   G  P+   LRVFGC  Y  +      KLDDKS + VF+GY  +   Y   +  T +
Sbjct: 676 QKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSR 735

Query: 124 MMVSRDVVF 133
           + +SR V F
Sbjct: 736 LYISRHVRF 744

[Close]

BLAST of Cmc04g0095101 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-16
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 0


Query: 4   PFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNKTPQ 63
           P TP+ NG+ ERK+R I+ M   +L    + K +W      AVYL N  PT  L  ++P 
Sbjct: 595 PHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPF 654

Query: 64  QAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPITKK 123
           Q   G+ P+   L+VFGC  Y  +      KL+DKS +  F+GY  +   Y   +  T +
Sbjct: 655 QKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGR 714

Query: 124 MMVSRDVVF 133
           +  SR V F
Sbjct: 715 LYTSRHVQF 723

[Close]

BLAST of Cmc04g0095101 vs. ExPASy TrEMBL
Match: A0A5D3BA28 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001640 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.5e-114
Identity = 207/223 (92.83%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK
Sbjct: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI
Sbjct: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS
Sbjct: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSHEPLNFEEASQNDKWKI 224
           SSASSSEGPRGMRSLRDIYDETEEL+ +     +  +N+K ++
Sbjct: 181 SSASSSEGPRGMRSLRDIYDETEELTVDVKWVSKIKRNEKGEV 223

[Close]

BLAST of Cmc04g0095101 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 726 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 785

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 786 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFADSEPLNFEEASQNDKWKIAMD 845

[Close]

BLAST of Cmc04g0095101 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 726 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 785

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 786 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFGDSEPLNFEEASQNDKWKIAMD 845

[Close]

BLAST of Cmc04g0095101 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 726 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 785

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 786 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFGDSEPLNFEEASQNDKWKIAMD 845

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BLAST of Cmc04g0095101 vs. ExPASy TrEMBL
Match: A0A5A7UNW6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G00840 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 206/251 (82.07%), Postives = 218/251 (86.85%), Query Frame = 0


Query: 1   MTIPFTPQQNGVVERKNRTILYMVRNMLKSKKLSKEFWAQVVECAVYLSNHSPTRSLWNK 60
           MT+PFTPQQNGVVERKNRTIL M R+MLK KK+ KEFWAQ VECAVYLSN SPTRSLWNK
Sbjct: 506 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 565

Query: 61  TPQQAWTGRKPSIAHLRVFGCMIYAHIPDQKHCKLDDKSDKYVFVGYDASSKGYKLYNPI 120
           TPQQAWTGRKPSI HLRVFGCM YAHIPDQK  KLDDKS+KYVFVGYDASSKGYKLYNP+
Sbjct: 566 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 625

Query: 121 TKKMMVSRDVVFGKEASGNWNDEPEDYKFLLFPNDHDEPSDIASLSTPPSPITPQQSTSS 180
           TKK +VSRDVVF +EAS NWNDEPEDYKFL FP++HDEPSDIA  S P SPITPQQSTSS
Sbjct: 626 TKKTIVSRDVVFDEEASWNWNDEPEDYKFLCFPDEHDEPSDIA--SPPTSPITPQQSTSS 685

Query: 181 SSASSSEGPRGMRSLRDIYDETEELSH--------------EPLNFEEASQNDKWKIAMD 238
           SSASSSEGPRGMRSL+DIYDETEELS               EPLNFEEASQNDKWKIAMD
Sbjct: 686 SSASSSEGPRGMRSLQDIYDETEELSQSFNNLTLFCLFGDSEPLNFEEASQNDKWKIAMD 745

The following BLAST results are available for this feature:

BLAST of Cmc04g0095101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036801.1	3.0e-114	92.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	4.5e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK22149.1	4.5e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK03241.1	4.5e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0031444.1	4.5e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc04g0095101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.2e-34	39.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.9e-27	47.37	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.7e-17	37.21	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.3e-16	35.66	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc04g0095101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA28	1.5e-114	92.83	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	2.2e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	2.2e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	2.2e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UNW6	2.2e-110	82.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc04g0095101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..80 e-value: 1.4E-17 score: 65.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..189
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..143
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..70 score: 11.713969
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095101.1	Cmc04g0095101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding