Cmc04g0094851 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094851
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr04: 7868027 .. 7868443 (-)
RNA-Seq Expression	Cmc04g0094851
Synteny	Cmc04g0094851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAGAGTTACTACAGTTCAAGCATAACAACGTTTGGACTTTGGTTCCTAAACCTGATGGGGCAAACATCATAGAAACTAAGTGGATCTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATAAGGAACAAGACCTGTTTGGTGGCTCAAGGTTATGCACAGGTAGAAGGTGTTGATTTTGATGAAACGTTTGCACCTGTGGCTAGACTTGAAGCTATTCGCCTCTTGCTCAGTATATCATGTTTACGAAAATTTAAATTGTTTCAAATTGACGTTAAAAGTGCCTTCCTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACCTAAAAAGTTTGTTGATTATGAATTTCCTCAGTATGTCTACAAGCTTAATAAAGCTCTATATGGGTTAAAGCAAGCTCCTTAG

mRNA sequence

ATGCAAGAAGAGTTACTACAGTTCAAGCATAACAACGTTTGGACTTTGGTTCCTAAACCTGATGGGGCAAACATCATAGAAACTAAGTGGATCTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATAAGGAACAAGACCTGTTTGGTGGCTCAAGGTTATGCACAGGTAGAAGGTGTTGATTTTGATGAAACGTTTGCACCTGTGGCTAGACTTGAAGCTATTCGCCTCTTGCTCAGTATATCATGTTTACGAAAATTTAAATTGTTTCAAATTGACGTTAAAAGTGCCTTCCTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACCTAAAAAGTTTGTTGATTATGAATTTCCTCAGTATGTCTACAAGCTTAATAAAGCTCTATATGGGTTAAAGCAAGCTCCTTAG

Coding sequence (CDS)

ATGCAAGAAGAGTTACTACAGTTCAAGCATAACAACGTTTGGACTTTGGTTCCTAAACCTGATGGGGCAAACATCATAGAAACTAAGTGGATCTTTAAAAATAAAACTGATGAATCTGAGAGTGTAATAAGGAACAAGACCTGTTTGGTGGCTCAAGGTTATGCACAGGTAGAAGGTGTTGATTTTGATGAAACGTTTGCACCTGTGGCTAGACTTGAAGCTATTCGCCTCTTGCTCAGTATATCATGTTTACGAAAATTTAAATTGTTTCAAATTGACGTTAAAAGTGCCTTCCTGAATGGATACTTAAATGAGGAAGTCTATGTAGCACAACCTAAAAAGTTTGTTGATTATGAATTTCCTCAGTATGTCTACAAGCTTAATAAAGCTCTATATGGGTTAAAGCAAGCTCCTTAG

Protein sequence

MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGVDFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEFPQYVYKLNKALYGLKQAP

Homology

[Close]

BLAST of Cmc04g0094851 vs. NCBI nr
Match: TYJ98295.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 3.1e-66
Identity = 127/138 (92.03%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEELLQFKHNNVWTLVPKPDGANII TKWIFKNKTDES SV+RNK CLVAQGYAQVEGV
Sbjct: 442 MQEELLQFKHNNVWTLVPKPDGANIIGTKWIFKNKTDESGSVVRNKACLVAQGYAQVEGV 501

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           DFDETFAPVARLEAIRLLL ISC RKFKLFQ+DVKSAFLNGYLNEEVYVAQPK F+D EF
Sbjct: 502 DFDETFAPVARLEAIRLLLRISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQPKGFIDSEF 561

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYK+NKALYGLKQAP
Sbjct: 562 PQYVYKINKALYGLKQAP 579

[Close]

BLAST of Cmc04g0094851 vs. NCBI nr
Match: KAA0037650.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 9.2e-63
Identity = 123/138 (89.13%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEELLQFK NNVWT+VPKPDGAN+I TKWIFKNKTDES S+IRNK  L+AQGYAQVEGV
Sbjct: 130 MQEELLQFKRNNVWTMVPKPDGANVIGTKWIFKNKTDESGSIIRNKARLIAQGYAQVEGV 189

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           DFDETFA VARLEAIRLLLSISC RKFKLF++DVKSAFLNGYLNEEVYVAQPK FVD EF
Sbjct: 190 DFDETFALVARLEAIRLLLSISCFRKFKLFRMDVKSAFLNGYLNEEVYVAQPKGFVDSEF 249

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYKLNKALYGLKQAP
Sbjct: 250 PQYVYKLNKALYGLKQAP 267

[Close]

BLAST of Cmc04g0094851 vs. NCBI nr
Match: KAA0042206.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26777.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 122/138 (88.41%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEELLQFK NN+WTLVPKPD ANII TKWIFKNKTDESESVIRN+  LVAQGYAQV+GV
Sbjct: 767 MQEELLQFKRNNIWTLVPKPDVANIIGTKWIFKNKTDESESVIRNEARLVAQGYAQVKGV 826

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           DF++TFAPVARLEAIRLLLSISC RKFKLFQ+DVKSAFLNGYLNEEVYVAQ K+FVD EF
Sbjct: 827 DFNKTFAPVARLEAIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 886

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYK NKALYGLKQAP
Sbjct: 887 PQYVYKQNKALYGLKQAP 904

[Close]

BLAST of Cmc04g0094851 vs. NCBI nr
Match: KAA0051798.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 121/138 (87.68%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1    MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
            MQEE LQFK NNVWTLVPKPDGANII TKWIFKNKTDES S+IRNK  LVAQGY QVEGV
Sbjct: 870  MQEEFLQFKRNNVWTLVPKPDGANIIGTKWIFKNKTDESGSIIRNKARLVAQGYTQVEGV 929

Query: 61   DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
            D DETFAPVARLEAIRLLLSISC +KFKLFQ+DVKSAFLNGYLNEEV VA+PK F+D EF
Sbjct: 930  DCDETFAPVARLEAIRLLLSISCFQKFKLFQMDVKSAFLNGYLNEEVNVAEPKGFIDSEF 989

Query: 121  PQYVYKLNKALYGLKQAP 139
            PQYVYKLNKALYGLKQAP
Sbjct: 990  PQYVYKLNKALYGLKQAP 1007

[Close]

BLAST of Cmc04g0094851 vs. NCBI nr
Match: TYK21443.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 121/138 (87.68%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEE LQFK NNVWTLVPKPDGANII TKWIFKNKTDES S+IRNK  LVAQGY QVEGV
Sbjct: 843 MQEEFLQFKRNNVWTLVPKPDGANIIGTKWIFKNKTDESGSIIRNKARLVAQGYTQVEGV 902

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           D DETFAPVARLEAIRLLLSISC +KFKLFQ+DVKSAFLNGYLNEEV VA+PK F+D EF
Sbjct: 903 DCDETFAPVARLEAIRLLLSISCFQKFKLFQMDVKSAFLNGYLNEEVNVAEPKGFIDSEF 962

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYKLNKALYGLKQAP
Sbjct: 963 PQYVYKLNKALYGLKQAP 980

[Close]

BLAST of Cmc04g0094851 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.5e-27
Identity = 61/138 (44.20%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEE+   + N  + LV  P G   ++ KW+FK K D    ++R K  LV +G+ Q +G+
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           DFDE F+PV ++ +IR +LS++     ++ Q+DVK+AFL+G L EE+Y+ QP+ F     
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121 PQYVYKLNKALYGLKQAP 139
              V KLNK+LYGLKQAP
Sbjct: 950 KHMVCKLNKSLYGLKQAP 967

[Close]

BLAST of Cmc04g0094851 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-26
Identity = 60/129 (46.51%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 11   NNVWTLVPKPDG-ANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGVDFDETFAPV 70
            N+ W LVP P     I+  +WIF  K +   S+ R K  LVA+GY Q  G+D+ ETF+PV
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 71   ARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEFPQYVYKLNK 130
             +  +IR++L ++  R + + Q+DV +AFL G L ++VY++QP  F+D + P YV KL K
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRK 1101

Query: 131  ALYGLKQAP 139
            ALYGLKQAP
Sbjct: 1102 ALYGLKQAP 1110

[Close]

BLAST of Cmc04g0094851 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26
Identity = 60/129 (46.51%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 11   NNVWTLV-PKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGVDFDETFAPV 70
            N+ W LV P P    I+  +WIF  K +   S+ R K  LVA+GY Q  G+D+ ETF+PV
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

Query: 71   ARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEFPQYVYKLNK 130
             +  +IR++L ++  R + + Q+DV +AFL G L +EVY++QP  FVD + P YV +L K
Sbjct: 1025 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRK 1084

Query: 131  ALYGLKQAP 139
            A+YGLKQAP
Sbjct: 1085 AIYGLKQAP 1093

[Close]

BLAST of Cmc04g0094851 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-26
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 0


Query: 4    ELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGVDFD 63
            EL   K NN WT+  +P+  NI++++W+F  K +E  + IR K  LVA+G+ Q   +D++
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   ETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEFPQY 123
            ETFAPVAR+ + R +LS+      K+ Q+DVK+AFLNG L EE+Y+  P+          
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DN 1032

Query: 124  VYKLNKALYGLKQA 138
            V KLNKA+YGLKQA
Sbjct: 1033 VCKLNKAIYGLKQA 1044

[Close]

BLAST of Cmc04g0094851 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEEL     N  W LVP P   NI+  KW+FK K     ++ R K  LVA+G+ Q EG+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFDETFAPVARLEAIRLLLSIS 83
            F ET++PV R   IR +L+++
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc04g0094851 vs. ExPASy TrEMBL
Match: A0A5D3BIP9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00070 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 127/138 (92.03%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEELLQFKHNNVWTLVPKPDGANII TKWIFKNKTDES SV+RNK CLVAQGYAQVEGV
Sbjct: 442 MQEELLQFKHNNVWTLVPKPDGANIIGTKWIFKNKTDESGSVVRNKACLVAQGYAQVEGV 501

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           DFDETFAPVARLEAIRLLL ISC RKFKLFQ+DVKSAFLNGYLNEEVYVAQPK F+D EF
Sbjct: 502 DFDETFAPVARLEAIRLLLRISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQPKGFIDSEF 561

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYK+NKALYGLKQAP
Sbjct: 562 PQYVYKINKALYGLKQAP 579

[Close]

BLAST of Cmc04g0094851 vs. ExPASy TrEMBL
Match: A0A5A7T2Q0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00330 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.5e-63
Identity = 123/138 (89.13%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEELLQFK NNVWT+VPKPDGAN+I TKWIFKNKTDES S+IRNK  L+AQGYAQVEGV
Sbjct: 130 MQEELLQFKRNNVWTMVPKPDGANVIGTKWIFKNKTDESGSIIRNKARLIAQGYAQVEGV 189

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           DFDETFA VARLEAIRLLLSISC RKFKLF++DVKSAFLNGYLNEEVYVAQPK FVD EF
Sbjct: 190 DFDETFALVARLEAIRLLLSISCFRKFKLFRMDVKSAFLNGYLNEEVYVAQPKGFVDSEF 249

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYKLNKALYGLKQAP
Sbjct: 250 PQYVYKLNKALYGLKQAP 267

[Close]

BLAST of Cmc04g0094851 vs. ExPASy TrEMBL
Match: A0A5D3DSN1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00770 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 122/138 (88.41%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEELLQFK NN+WTLVPKPD ANII TKWIFKNKTDESESVIRN+  LVAQGYAQV+GV
Sbjct: 767 MQEELLQFKRNNIWTLVPKPDVANIIGTKWIFKNKTDESESVIRNEARLVAQGYAQVKGV 826

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           DF++TFAPVARLEAIRLLLSISC RKFKLFQ+DVKSAFLNGYLNEEVYVAQ K+FVD EF
Sbjct: 827 DFNKTFAPVARLEAIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 886

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYK NKALYGLKQAP
Sbjct: 887 PQYVYKQNKALYGLKQAP 904

[Close]

BLAST of Cmc04g0094851 vs. ExPASy TrEMBL
Match: A0A5D3DCZ8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001130 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 121/138 (87.68%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEE LQFK NNVWTLVPKPDGANII TKWIFKNKTDES S+IRNK  LVAQGY QVEGV
Sbjct: 843 MQEEFLQFKRNNVWTLVPKPDGANIIGTKWIFKNKTDESGSIIRNKARLVAQGYTQVEGV 902

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
           D DETFAPVARLEAIRLLLSISC +KFKLFQ+DVKSAFLNGYLNEEV VA+PK F+D EF
Sbjct: 903 DCDETFAPVARLEAIRLLLSISCFQKFKLFQMDVKSAFLNGYLNEEVNVAEPKGFIDSEF 962

Query: 121 PQYVYKLNKALYGLKQAP 139
           PQYVYKLNKALYGLKQAP
Sbjct: 963 PQYVYKLNKALYGLKQAP 980

[Close]

BLAST of Cmc04g0094851 vs. ExPASy TrEMBL
Match: A0A5A7U931 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002070 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 121/138 (87.68%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1    MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
            MQEE LQFK NNVWTLVPKPDGANII TKWIFKNKTDES S+IRNK  LVAQGY QVEGV
Sbjct: 870  MQEEFLQFKRNNVWTLVPKPDGANIIGTKWIFKNKTDESGSIIRNKARLVAQGYTQVEGV 929

Query: 61   DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFVDYEF 120
            D DETFAPVARLEAIRLLLSISC +KFKLFQ+DVKSAFLNGYLNEEV VA+PK F+D EF
Sbjct: 930  DCDETFAPVARLEAIRLLLSISCFQKFKLFQMDVKSAFLNGYLNEEVNVAEPKGFIDSEF 989

Query: 121  PQYVYKLNKALYGLKQAP 139
            PQYVYKLNKALYGLKQAP
Sbjct: 990  PQYVYKLNKALYGLKQAP 1007

[Close]

BLAST of Cmc04g0094851 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-24
Identity = 56/141 (39.72%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           M +E+   +  + W +   P     I  KW++K K +   ++ R K  LVA+GY Q EG+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DFDETFAPVARLEAIRLLLSISCLRKFKLFQIDVKSAFLNGYLNEEVYVAQPKKFV---- 120
           DF ETF+PV +L +++L+L+IS +  F L Q+D+ +AFLNG L+EE+Y+  P  +     
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 DYEFPQYVYKLNKALYGLKQA 138
           D   P  V  L K++YGLKQA
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQA 242

[Close]

BLAST of Cmc04g0094851 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-14
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 1   MQEELLQFKHNNVWTLVPKPDGANIIETKWIFKNKTDESESVIRNKTCLVAQGYAQVEGV 60
           MQEEL     N  W LVP P   NI+  KW+FK K     ++ R K  LVA+G+ Q EG+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFDETFAPVARLEAIRLLLSIS 83
            F ET++PV R   IR +L+++
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc04g0094851 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98295.1	3.1e-66	92.03	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0037650.1	9.2e-63	89.13	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [...	[more]
KAA0042206.1	3.0e-61	88.41	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26777.1 gag-pol polyprotein [...	[more]
KAA0051798.1	5.1e-61	87.68	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK21443.1	5.1e-61	87.68	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0094851 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.5e-27	44.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.9e-26	46.51	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.5e-26	46.51	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.2e-26	45.52	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	9.1e-13	43.90	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0094851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIP9	1.5e-66	92.03	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G...	[more]
A0A5A7T2Q0	4.5e-63	89.13	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G...	[more]
A0A5D3DSN1	1.4e-61	88.41	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G...	[more]
A0A5D3DCZ8	2.4e-61	87.68	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G...	[more]
A0A5A7U931	2.4e-61	87.68	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G0...	[more]

BLAST of Cmc04g0094851 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-24	39.72	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	6.4e-14	43.90	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..138 e-value: 2.6E-41 score: 141.8
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..138
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..138
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 10..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094851.1	Cmc04g0094851.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding