Cmc04g0094801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0094801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 7820526 .. 7821893 (+)
RNA-Seq Expression	Cmc04g0094801
Synteny	Cmc04g0094801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTTCCCACATTGGCACCGTTAATACACCCACCATCAAACTTTCCAACACCTATCATGTCCCAAATCTCACATTCAACCTAGCTTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCCTCTCATGGTTGTCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCCCTACAACATTCTCCTGTGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACTCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTTCGTAGTTTAACTTCTACTGGTCTTTTAAACAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCTGCTTTGTCCTTTCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTCTGATATTTGGGGACCTGCTCCATGTCCTACTGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGATTCACTTGGATTTACTTTCTCAGAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGATTCAAACACAATTTTCTAGCAAAATCAAAATTCTTCGCACAGATAATGCAATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGGACGAGCGGAACGCAAACACCGCCACATTTTAGACTCTGTTCGTGCCCAACTCCTTTCTGGATCCTGTCCTGAAAAATTTTGGGGAGAGGCTGCCCTCACCTCTGTTTATGTCATCAATCGCCTTCCATCTCAGGTCATACACAATATTTCCCCATTTGAACGACTATACGGTACTCCTCCAACTTACTCTCATCTCAAAGTCTTTGGGTGTGCATGCTTTGTGTTATTACATTCCCATGAACATACCAAACTGGAACCTCGTGCTCGTCTCTGTTGTTTCTTGGGTTATGGCACCGAACATAAAGGTTTTCGTTGTTGGGATCCTATCTCTCAACGATTACGTATTTCTCGCCATGTCACCTTTTGGGAACATCGTATGTTTTCTAGTCTTTCTTCATTTCATGCCTCTCTATCTAGTCCGCACTCATTCTTTACTGATCCTTCTACCCCTCTATTTCCCACTCCTGATTCACCATCCAACACTACATCTTGTCCCCCACACACATCTGAGCTCACTGAATCGCACACTACCTCCGCACTCCCGGAACTCCCATCTGTCCCTGTGAGGAACCTGAACATGCACCTGTCCGACGATCCACCCGGGTAA

mRNA sequence

ATGTCTATTTCCCACATTGGCACCGTTAATACACCCACCATCAAACTTTCCAACACCTATCATGTCCCAAATCTCACATTCAACCTAGCTTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCCTCTCATGGTTGTCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCCCTACAACATTCTCCTGTGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACTCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTTCGTAGTTTAACTTCTACTGGTCTTTTAAACAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCTGCTTTGTCCTTTCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTCTGATATTTGGGGACCTGCTCCATGTCCTACTGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGATTCACTTGGATTTACTTTCTCAGAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGATTCAAACACAATTTTCTAGCAAAATCAAAATTCTTCGCACAGATAATGCAATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGGACGAGCGGAACGCAAACACCGCCACATTTTAGACTCTGTTCGTGCCCAACTCCTTTCTGGATCCTGTCCTGAAAAATTTTGGGGAGAGGCTGCCCTCACCTCTGTTTATGTCATCAATCGCCTTCCATCTCAGGTCATACACAATATTTCCCCATTTGAACGACTATACGGTACTCCTCCAACTTACTCTCATCTCAAAGTCTTTGGGTGTGCATGCTTTGTGTTATTACATTCCCATGAACATACCAAACTGGAACCTCGTGCTCGTCTCTGTTGTTTCTTGGGTTATGGCACCGAACATAAAGGTTTTCGTTGTTGGGATCCTATCTCTCAACGATTACGTATTTCTCGCCATGTCACCTTTTGGGAACATCGTATGTTTTCTAGTCTTTCTTCATTTCATGCCTCTCTATCTAGTCCGCACTCATTCTTTACTGATCCTTCTACCCCTCTATTTCCCACTCCTGATTCACCATCCAACACTACATCTTGTCCCCCACACACATCTGAGCTCACTGAATCGCACACTACCTCCGCACTCCCGGAACTCCCATCTGTCCCTGTGAGGAACCTGAACATGCACCTGTCCGACGATCCACCCGGGTAA

Coding sequence (CDS)

ATGTCTATTTCCCACATTGGCACCGTTAATACACCCACCATCAAACTTTCCAACACCTATCATGTCCCAAATCTCACATTCAACCTAGCTTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCCTCTCATGGTTGTCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCCCTACAACATTCTCCTGTGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACTCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTTCGTAGTTTAACTTCTACTGGTCTTTTAAACAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCTGCTTTGTCCTTTCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTCTGATATTTGGGGACCTGCTCCATGTCCTACTGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGATTCACTTGGATTTACTTTCTCAGAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGATTCAAACACAATTTTCTAGCAAAATCAAAATTCTTCGCACAGATAATGCAATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGGACGAGCGGAACGCAAACACCGCCACATTTTAGACTCTGTTCGTGCCCAACTCCTTTCTGGATCCTGTCCTGAAAAATTTTGGGGAGAGGCTGCCCTCACCTCTGTTTATGTCATCAATCGCCTTCCATCTCAGGTCATACACAATATTTCCCCATTTGAACGACTATACGGTACTCCTCCAACTTACTCTCATCTCAAAGTCTTTGGGTGTGCATGCTTTGTGTTATTACATTCCCATGAACATACCAAACTGGAACCTCGTGCTCGTCTCTGTTGTTTCTTGGGTTATGGCACCGAACATAAAGGTTTTCGTTGTTGGGATCCTATCTCTCAACGATTACGTATTTCTCGCCATGTCACCTTTTGGGAACATCGTATGTTTTCTAGTCTTTCTTCATTTCATGCCTCTCTATCTAGTCCGCACTCATTCTTTACTGATCCTTCTACCCCTCTATTTCCCACTCCTGATTCACCATCCAACACTACATCTTGTCCCCCACACACATCTGAGCTCACTGAATCGCACACTACCTCCGCACTCCCGGAACTCCCATCTGTCCCTGTGAGGAACCTGAACATGCACCTGTCCGACGATCCACCCGGGTAA

Protein sequence

MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCWDPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPPHTSELTESHTTSALPELPSVPVRNLNMHLSDDPPG

Homology

[Close]

BLAST of Cmc04g0094801 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 907.5 bits (2344), Expect = 4.6e-260
Identity = 440/441 (99.77%), Postives = 440/441 (99.77%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 782 LTSELTESHTTSALPELPSVP 802

[Close]

BLAST of Cmc04g0094801 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 907.5 bits (2344), Expect = 4.6e-260
Identity = 440/441 (99.77%), Postives = 440/441 (99.77%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 330 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 389

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 390 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 449

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 450 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 509

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 510 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 569

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI
Sbjct: 570 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 629

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 630 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 689

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 690 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 749

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 750 LTSELTESHTTSALPELPSVP 770

[Close]

BLAST of Cmc04g0094801 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 907.5 bits (2344), Expect = 4.6e-260
Identity = 440/441 (99.77%), Postives = 440/441 (99.77%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 782 LTSELTESHTTSALPELPSVP 802

[Close]

BLAST of Cmc04g0094801 vs. NCBI nr
Match: KAA0058316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 701.8 bits (1810), Expect = 3.8e-198
Identity = 357/441 (80.95%), Postives = 357/441 (80.95%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVN           
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVN----------- 541

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
                                                   DNAMEYKDSRFLSFLAQQGT
Sbjct: 542 ----------------------------------------DNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDS                                VI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDS--------------------------------VI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 719

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 719

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 782 LTSELTESHTTSALPELPSVP 719

[Close]

BLAST of Cmc04g0094801 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 669.5 bits (1726), Expect = 2.1e-188
Identity = 332/460 (72.17%), Postives = 375/460 (81.52%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           M+I+H+GT+NTP++ L +TY VPNLTFNL SVGQLCDLGLT+ FSS+GCQVQD QTGQ I
Sbjct: 357 MNITHMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTI 416

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFEL SLQ     P+ISAPVTD+  +QWHLRLGHAS  KLR L S   LN++
Sbjct: 417 GTGRKVGRLFELLSLQVPS--PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSI 476

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           ++F  F+CL+CK+AKQPALSF KS S+CDKPF LIHSDIWGPAP  TV+GYRY+VLFIDD
Sbjct: 477 TKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDD 536

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           +SRFTWIYFL++RS L + Y++FANMI+TQFS  IK LRTDNA+EYKDS  LSFL+QQGT
Sbjct: 537 FSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGT 596

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           L+QRSCPHTSQQNGRAERKHRHILDSVRA LLS SCPEKFWGEAALTSVY INRLPS V+
Sbjct: 597 LVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVL 656

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
            NISPFE+LYGTPP YS+LKVFGCACFVLLH HEHTKLEPRARLC FLGYGTEHKGFRCW
Sbjct: 657 QNISPFEKLYGTPPNYSNLKVFGCACFVLLHPHEHTKLEPRARLCWFLGYGTEHKGFRCW 716

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDS-PSNTTSCP 420
           DP+S RLRISRHVTFWEH MFS LSSFH S SSP SFFTD S  LFP P+S P N  +  
Sbjct: 717 DPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQSFFTDTSIDLFPLPESTPDNELAQS 776

Query: 421 PHTSELTESHTTS-----ALPELP---SVPVRNLNMHLSD 452
             TS  ++  + S       P++P   S  VR    HL D
Sbjct: 777 APTSATSDQSSISDGNPDPSPDIPPRRSTRVREPPSHLQD 814

[Close]

BLAST of Cmc04g0094801 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-63
Identity = 149/455 (32.75%), Postives = 239/455 (52.53%), Query Frame = 0


Query: 3   ISHIGTVNTPT----IKLSNTYHVPNLTFNLASVGQLCDL-GLTIIFSSHGCQVQDSQTG 62
           ISH G+ +  T    + L N  +VPN+  NL SV +LC+  G+++ F     QV+D  TG
Sbjct: 370 ISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTG 429

Query: 63  QVIGTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL 122
             +  G+    L+E       PV    ++P +  T   WH RLGH + + L S+ S   L
Sbjct: 430 VPLLQGKTKDELYEWPIASSQPV-SLFASPSSKATHSSWHARLGHPAPSILNSVISNYSL 489

Query: 123 NNVSQFNTF-DCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVL 182
           + ++  + F  C  C + K   + F +S     +P   I+SD+W  +P  + + YRY+V+
Sbjct: 490 SVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVI 549

Query: 183 FIDDYSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLA 242
           F+D ++R+TW+Y L+ +S + + ++ F N+++ +F ++I    +DN  E+       + +
Sbjct: 550 FVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFS 609

Query: 243 QQGTLIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLP 302
           Q G     S PHT + NG +ERKHRHI+++    L   S P+ +W  A   +VY+INRLP
Sbjct: 610 QHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 669

Query: 303 SQVIHNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKG 362
           + ++   SPF++L+GT P Y  L+VFGCAC+  L  +   KL+ ++R C FLGY      
Sbjct: 670 TPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSA 729

Query: 363 FRCWDPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTT 422
           + C    + RL ISRHV F E+      S++ A+LS       + S    P    P+ T 
Sbjct: 730 YLCLHLQTSRLYISRHVRFDENCF--PFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTP 789

Query: 423 SCPPHTSELTESHTTSALPELPSVPVRNLNMHLSD 452
             P      ++ H  +  P  PS P RN  +  S+
Sbjct: 790 VLP--APSCSDPHHAATPPSSPSAPFRNSQVSSSN 816

[Close]

BLAST of Cmc04g0094801 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.8e-61
Identity = 152/472 (32.20%), Postives = 235/472 (49.79%), Query Frame = 0


Query: 3   ISHIGTVNTPT----IKLSNTYHVPNLTFNLASVGQLCDLG-LTIIFSSHGCQVQDSQTG 62
           I+H G+ + PT    + L+   +VPN+  NL SV +LC+   +++ F     QV+D  TG
Sbjct: 349 ITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTG 408

Query: 63  QVIGTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL 122
             +  G+    L+E   +  S      ++P +  T   WH RLGH S   L S+ S   L
Sbjct: 409 VPLLQGKTKDELYE-WPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSL 468

Query: 123 NNVS-QFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVL 182
             ++       C  C + K   + F  S     KP   I+SD+W  +P  +++ YRY+V+
Sbjct: 469 PVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVI 528

Query: 183 FIDDYSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLA 242
           F+D ++R+TW+Y L+ +S +   ++ F ++++ +F ++I  L +DN  E+   R   +L+
Sbjct: 529 FVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLS 588

Query: 243 QQGTLIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLP 302
           Q G     S PHT + NG +ERKHRHI++     L   S P+ +W  A   +VY+INRLP
Sbjct: 589 QHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLP 648

Query: 303 SQVIHNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKG 362
           + ++   SPF++L+G PP Y  LKVFGCAC+  L  +   KLE +++ C F+GY      
Sbjct: 649 TPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSA 708

Query: 363 FRCWDPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPH---------SFFTDPSTPLF- 422
           + C    + RL  SRHV F E     S ++F  S S            S  T P+TPL  
Sbjct: 709 YLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVL 768

Query: 423 --------------PTPDSPSNTTSCPPHTSELTESHTTSALPELPSVPVRN 445
                           P SPS   +    +S L  S  +S     P+ P  N
Sbjct: 769 PAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHN 816

[Close]

BLAST of Cmc04g0094801 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-52
Identity = 132/416 (31.73%), Postives = 208/416 (50.00%), Query Frame = 0


Query: 13  TIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRLFEL 72
           T+ L +  HVP+L  NL S   L   G    F++   ++  ++   VI  G   G L+  
Sbjct: 347 TLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRL--TKGSLVIAKGVARGTLYRT 406

Query: 73  TSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCK 132
            +         ++A   + ++  WH R+GH S   L+ L    L++         C +C 
Sbjct: 407 NA---EICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL 466

Query: 133 MAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRN 192
             KQ  +SF  S+        L++SD+ GP    ++ G +YFV FIDD SR  W+Y L+ 
Sbjct: 467 FGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKT 526

Query: 193 RSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQ 252
           +  ++Q++  F  +++ +   K+K LR+DN  EY    F  + +  G   +++ P T Q 
Sbjct: 527 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQH 586

Query: 253 NGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVIHNISPFERLYGT 312
           NG AER +R I++ VR+ L     P+ FWGEA  T+ Y+INR PS  +    P       
Sbjct: 587 NGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNK 646

Query: 313 PPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCWDPISQRLRISRH 372
             +YSHLKVFGC  F  +   + TKL+ ++  C F+GYG E  G+R WDP+ +++  SR 
Sbjct: 647 EVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRD 706

Query: 373 VTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPT-PDSPSNTTSCPPHTSELTE 428
           V F E  + ++     A +S       +   P F T P + +N TS    T E++E
Sbjct: 707 VVFRESEVRTA-----ADMSEK---VKNGIIPNFVTIPSTSNNPTSAESTTDEVSE 749

[Close]

BLAST of Cmc04g0094801 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-42
Identity = 111/386 (28.76%), Postives = 181/386 (46.89%), Query Frame = 0


Query: 10  NTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRL 69
           N   I L +         NL SV +L + G++I F   G  +  +    V  +G      
Sbjct: 339 NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSG------ 398

Query: 70  FELTSLQHSPV--FPAISAPVTDNTLFQ-WHLRLGHASSNKLRSLTSTGLLNNVSQFNTF 129
                L + PV  F A S        F+ WH R GH S  KL  +    + ++ S  N  
Sbjct: 399 ----MLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNL 458

Query: 130 D-----CLHCKMAKQPALSFP--KSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFID 189
           +     C  C   KQ  L F   K  +   +P  ++HSD+ GP    T++   YFV+F+D
Sbjct: 459 ELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVD 518

Query: 190 DYSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQG 249
            ++ +   Y ++ +S ++ ++ DF    +  F+ K+  L  DN  EY  +    F  ++G
Sbjct: 519 QFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKG 578

Query: 250 TLIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQV 309
                + PHT Q NG +ER  R I +  R  +      + FWGEA LT+ Y+INR+PS+ 
Sbjct: 579 ISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRA 638

Query: 310 IHNIS--PFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGF 369
           + + S  P+E  +   P   HL+VFG   +V +  ++  K + ++    F+GY  E  GF
Sbjct: 639 LVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGY--EPNGF 698

Query: 370 RCWDPISQRLRISRHVTFWEHRMFSS 384
           + WD ++++  ++R V   E  M +S
Sbjct: 699 KLWDAVNEKFIVARDVVVDETNMVNS 711

[Close]

BLAST of Cmc04g0094801 vs. ExPASy Swiss-Prot
Match: Q12490 (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.3e-19
Identity = 76/301 (25.25%), Postives = 129/301 (42.86%), Query Frame = 0


Query: 21  HVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRLFELTS---LQH 80
           H PN+ ++L S+ +L  + +T  F+ +   V +   G V+    K G  + ++    L  
Sbjct: 518 HTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPS 577

Query: 81  SPVFPAISAPVTDNTLFQW-----HLRLGHASSNKLRSLTSTGLLNNVSQFNTFD----- 140
           +   P I+   T  +  ++     H  L HA++  +R        N ++ FN  D     
Sbjct: 578 NISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKN---NTITYFNESDVDWSS 637

Query: 141 -----CLHCKMAKQPALSFPKSASL----CDKPFGLIHSDIWGPAPCPTVNGYRYFVLFI 200
                C  C + K       K + L      +PF  +H+DI+GP      +   YF+ F 
Sbjct: 638 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 697

Query: 201 DDYSRFTWIYFLRNR--SSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLA 260
           D+ ++F W+Y L +R   S+  ++      I+ QF + + +++ D   EY +     FL 
Sbjct: 698 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 757

Query: 261 QQGTLIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLP 298
           + G     +    S+ +G AER +R +LD  R QL     P   W  A   S  V N L 
Sbjct: 758 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 812

[Close]

BLAST of Cmc04g0094801 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 907.5 bits (2344), Expect = 2.2e-260
Identity = 440/441 (99.77%), Postives = 440/441 (99.77%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 782 LTSELTESHTTSALPELPSVP 802

[Close]

BLAST of Cmc04g0094801 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 907.5 bits (2344), Expect = 2.2e-260
Identity = 440/441 (99.77%), Postives = 440/441 (99.77%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 782 LTSELTESHTTSALPELPSVP 802

[Close]

BLAST of Cmc04g0094801 vs. ExPASy TrEMBL
Match: A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)

HSP 1 Score: 907.5 bits (2344), Expect = 2.2e-260
Identity = 440/441 (99.77%), Postives = 440/441 (99.77%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 330 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 389

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 390 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 449

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 450 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 509

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 510 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 569

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI
Sbjct: 570 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 629

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 630 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 689

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 690 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 749

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 750 LTSELTESHTTSALPELPSVP 770

[Close]

BLAST of Cmc04g0094801 vs. ExPASy TrEMBL
Match: A0A5A7UVX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006520 PE=4 SV=1)

HSP 1 Score: 701.8 bits (1810), Expect = 1.8e-198
Identity = 357/441 (80.95%), Postives = 357/441 (80.95%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVN           
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVN----------- 541

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
                                                   DNAMEYKDSRFLSFLAQQGT
Sbjct: 542 ----------------------------------------DNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDS                                VI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDS--------------------------------VI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 719

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 719

Query: 421 HTSELTESHTTSALPELPSVP 442
            TSELTESHTTSALPELPSVP
Sbjct: 782 LTSELTESHTTSALPELPSVP 719

[Close]

BLAST of Cmc04g0094801 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 1.0e-188
Identity = 332/460 (72.17%), Postives = 375/460 (81.52%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           M+I+H+GT+NTP++ L +TY VPNLTFNL SVGQLCDLGLT+ FSS+GCQVQD QTGQ I
Sbjct: 357 MNITHMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTI 416

Query: 61  GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFEL SLQ     P+ISAPVTD+  +QWHLRLGHAS  KLR L S   LN++
Sbjct: 417 GTGRKVGRLFELLSLQVPS--PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSI 476

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           ++F  F+CL+CK+AKQPALSF KS S+CDKPF LIHSDIWGPAP  TV+GYRY+VLFIDD
Sbjct: 477 TKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDD 536

Query: 181 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           +SRFTWIYFL++RS L + Y++FANMI+TQFS  IK LRTDNA+EYKDS  LSFL+QQGT
Sbjct: 537 FSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGT 596

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 300
           L+QRSCPHTSQQNGRAERKHRHILDSVRA LLS SCPEKFWGEAALTSVY INRLPS V+
Sbjct: 597 LVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVL 656

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 360
            NISPFE+LYGTPP YS+LKVFGCACFVLLH HEHTKLEPRARLC FLGYGTEHKGFRCW
Sbjct: 657 QNISPFEKLYGTPPNYSNLKVFGCACFVLLHPHEHTKLEPRARLCWFLGYGTEHKGFRCW 716

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDS-PSNTTSCP 420
           DP+S RLRISRHVTFWEH MFS LSSFH S SSP SFFTD S  LFP P+S P N  +  
Sbjct: 717 DPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQSFFTDTSIDLFPLPESTPDNELAQS 776

Query: 421 PHTSELTESHTTS-----ALPELP---SVPVRNLNMHLSD 452
             TS  ++  + S       P++P   S  VR    HL D
Sbjct: 777 APTSATSDQSSISDGNPDPSPDIPPRRSTRVREPPSHLQD 814

The following BLAST results are available for this feature:

BLAST of Cmc04g0094801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043149.1	4.6e-260	99.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065380.1	4.6e-260	99.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036574.1	4.6e-260	99.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0058316.1	3.8e-198	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK15021.1	2.1e-188	72.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc04g0094801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.3e-63	32.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.8e-61	32.20	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.7e-52	31.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-42	28.76	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12490	4.3e-19	25.25	Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]

BLAST of Cmc04g0094801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG18	2.2e-260	99.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	2.2e-260	99.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VDW0	2.2e-260	99.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UVX4	1.8e-198	80.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CT53	1.0e-188	72.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc04g0094801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 150..249 e-value: 1.4E-13 score: 51.0
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 147..313 score: 20.299007
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 82..136 e-value: 6.7E-10 score: 38.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 145..322 e-value: 9.5E-38 score: 131.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 403..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 403..455
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 14..385
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 149..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0094801.1	Cmc04g0094801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding